pycom12g01860

regulation of response to stimulus

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
1544678 .. 1545337
660 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
ATGGAAGTAATTCCATTTTTTTTAACTAATTTCCAGAATTTTTGTAAATCTGGGGTTCTGTACACAACAAAATATGGAACCCTCAAATTTGTCATATGGTCAGGTTTTATTTGGTCACTTGTTTATGTTTGCGACAAGAATATAAGTCCAAGGATGCCTTGGCTCTCAGATCCAATGAGGAAGGATGTTTCAGAAGTTCGTAAGAAGATCGATGCGATTAACAAAGAGTTAAAAGCCACTAGGACATACCTGCCAGAAGAAGGTAACACAACTGGATTTTTACCACATTTTGATGTTAATGTTTACTGCTATGCATATGCAATTATGGATCAATTCGTGCGTGTTCGTGATGAATTTTGGGTTTGTAACTTGTCACAGAAAAAGAAGTACAGAGTTGCACTTGAGTTTTTCAATGAAAAGAACAGAGAAAAAGTGCAGCTTATCACAAAGCTAATGGAGGTTATTTTGTTAAACAATTTTTTACTTGGCATAGCTAGGCTTGCAATTTCATGGATGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

174

Amino Acids

20.44

Weight (kDa)

9.25

Isoelectric Point (pI)

20.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 52 - 79 5.6e-08 Transcriptional activator
Transcrip_act PF04949 126 - 155 7.8e-08 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 258
AclWI GGATC 2 cut(s) 164, 336
AcsI RAATTY 3 cut(s) 37, 86, 353
AfaI GTAC 2 cut(s) 62, 389
AfiI CCNNNNNNNGG 1 cut(s) 260
AgsI TTSAA 1 cut(s) 412
AluBI AGCT 3 cut(s) 439, 451, 494
AluI AGCT 3 cut(s) 439, 451, 494
AlwI GGATC 2 cut(s) 164, 336
ApeKI GCWGC 1 cut(s) 436
ApoI RAATTY 3 cut(s) 37, 86, 353
Asp700I GAANNNNTTC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 448
BccI CCATC 1 cut(s) 508
BfaI CTAG 2 cut(s) 240, 495
BfuAI ACCTGC 1 cut(s) 258
BisI GCNGC 1 cut(s) 437
BlsI GCNGC 1 cut(s) 438
BmiI GGNNCC 1 cut(s) 79
BmsI GCATC 2 cut(s) 144, 202
BpuEI CTTGAG 1 cut(s) 422
Bsa29I ATCGAT 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 149, 158
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 277
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 149, 158
BseGI GGATG 3 cut(s) 159, 190, 519
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 448
BsgI GTGCAG 1 cut(s) 455
BshVI ATCGAT 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 260
Bsp1407I TGTACA 1 cut(s) 60
Bsp143I GATC 3 cut(s) 169, 207, 328
BspCNI CTCAG 1 cut(s) 179
BspDI ATCGAT 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 258
BspPI GGATC 2 cut(s) 164, 336
BsrGI TGTACA 1 cut(s) 60
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 2 cut(s) 149, 158
BssMI GATC 3 cut(s) 169, 207, 328
BssT1I CCWWGG 2 cut(s) 149, 158
BstAUI TGTACA 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 501
BstDEI CTNAG 1 cut(s) 166
BstF5I GGATG 3 cut(s) 159, 190, 519
BstKTI GATC 3 cut(s) 172, 210, 331
BstMBI GATC 3 cut(s) 169, 207, 328
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstV1I GCAGC 1 cut(s) 448
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 210
BsuTUI ATCGAT 1 cut(s) 210
BtsCI GGATG 3 cut(s) 159, 190, 519
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 501
ClaI ATCGAT 1 cut(s) 210
Csp6I GTAC 2 cut(s) 61, 388
CviAII CATG 1 cut(s) 510
CviJI RGCY 6 cut(s) 163, 236, 439, 451, 494, 499
CviKI_1 RGCY 6 cut(s) 163, 236, 439, 451, 494, 499
CviQI GTAC 2 cut(s) 61, 388
DdeI CTNAG 1 cut(s) 166
DpnI GATC 3 cut(s) 171, 209, 330
DpnII GATC 3 cut(s) 169, 207, 328
Eco130I CCWWGG 2 cut(s) 149, 158
EcoT14I CCWWGG 2 cut(s) 149, 158
EcoT22I ATGCAT 1 cut(s) 316
ErhI CCWWGG 2 cut(s) 149, 158
FaeI CATG 1 cut(s) 513
FalI AAGNNNNNCTT 4 cut(s) 142, 174, 423, 455
FatI CATG 1 cut(s) 509
FauNDI CATATG 2 cut(s) 95, 316
Fnu4HI GCNGC 1 cut(s) 437
FokI GGATG 2 cut(s) 166, 197
Fsp4HI GCNGC 1 cut(s) 437
FspBI CTAG 2 cut(s) 240, 495
GluI GCNGC 1 cut(s) 437
Hin1II CATG 1 cut(s) 513
Hpy166II GTNNAC 2 cut(s) 63, 304
Hpy188I TCNGA 2 cut(s) 169, 193
Hpy188III TCNNGA 2 cut(s) 34, 347
Hpy8I GTNNAC 2 cut(s) 63, 304
HpyAV CCTTC 2 cut(s) 175, 254
HpyCH4V TGCA 5 cut(s) 314, 320, 398, 436, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 1 cut(s) 166
Hsp92II CATG 1 cut(s) 513
Kzo9I GATC 3 cut(s) 169, 207, 328
LpnPI CCDG 6 cut(s) 36, 47, 87, 258, 263, 267
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 2 cut(s) 144, 202
MaeI CTAG 2 cut(s) 240, 495
MaeIII GTNAC 4 cut(s) 114, 263, 365, 372
MalI GATC 3 cut(s) 171, 209, 330
MboI GATC 3 cut(s) 169, 207, 328
MboII GAAGA 2 cut(s) 217, 269
MflI RGATCY 1 cut(s) 169
MluCI AATT 9 cut(s) 9, 28, 37, 86, 321, 332, 353, 475, 504
MnlI CCTC 3 cut(s) 92, 171, 451
Mph1103I ATGCAT 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 5 cut(s) 23, 219, 230, 297, 470
MslI CAYNNNNRTG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 500
NdeI CATATG 2 cut(s) 95, 316
NdeII GATC 3 cut(s) 169, 207, 328
NlaIII CATG 1 cut(s) 513
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 2 cut(s) 114, 372
NsiI ATGCAT 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 9
PkrI GCNGC 1 cut(s) 438
PspN4I GGNNCC 1 cut(s) 79
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 2 cut(s) 62, 389
RsaNI GTAC 2 cut(s) 61, 388
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 5 cut(s) 23, 219, 230, 297, 470
SatI GCNGC 1 cut(s) 437
Sau3AI GATC 3 cut(s) 169, 207, 328
SetI ASST 7 cut(s) 106, 252, 265, 441, 453, 462, 496
SfaNI GCATC 2 cut(s) 144, 202
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 9 cut(s) 9, 28, 37, 86, 321, 332, 353, 475, 504
SspMI CTAG 2 cut(s) 240, 495
StyI CCWWGG 2 cut(s) 149, 158
TaqI TCGA 1 cut(s) 210
TasI AATT 9 cut(s) 9, 28, 37, 86, 321, 332, 353, 475, 504
TatI WGTACW 2 cut(s) 60, 387
Tru1I TTAA 5 cut(s) 23, 219, 230, 297, 470
Tru9I TTAA 5 cut(s) 23, 219, 230, 297, 470
TseFI GTSAC 2 cut(s) 114, 372
TseI GCWGC 1 cut(s) 436
Tsp45I GTSAC 2 cut(s) 114, 372
TspDTI ATGAA 3 cut(s) 366, 429, 498
XapI RAATTY 3 cut(s) 37, 86, 353
XcmI CCANNNNNNNNNTGG 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 2 cut(s) 240, 495
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.