Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008069

Physical Location & Seq

Genomic Coordinates Forward (+)

2425853 .. 2426264

Gene Structure 412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAAGCTCTTTTTTTACGTCTGACAAGTTTGCATCAAATGGGTTCGCTAGCTCGCCCTCGAGCGCCTCAGCAGCACCGCCCTCTGCATCGGCACCACCGGCAGCCCGGACCTCATCGTCGGCCTCCTCACCACCAATTCCGCAACGTCCGCACCGTTCACATTGACGAGCGCCTTAACCTTTCGTCGGTGAGGCTGCATTCTGCCAATGGCTCCGACGACAACGTGCTAGATTTGAACAGCTTATCGGACGCCAGTATGACTGCTATCAGCGACAGATTACCCAGGCTCGAAAAGCTGAGCTTAATCTGGTGCTCCAATGCCTCCAGTATCGGTCTAATTTTGCTGATAAGTGTAAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like LRR_6

Protein Analysis

122

Amino Acids

13.74

Weight (kDa)

11.24

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15475
fragaria_vesca	FvH4_4g14060 FvH4_4g14060 FvH4_4g14060 FvH4_4g14060
malus_domestica	MD13G1179300.v1.1 MD16G1180300.v1.1
prunus_persica	Prupe.1G147900_v2.0.a1 Prupe.1G147900_v2.0.a1
pyrus_communis	pycom12g02670 pycom13g15470 pycom15g23770 pycom16g15140
rosa_chinensis	RchiOBHm_Chr4g0419291
rosa_laevigata	RLG00000007818
rosa_multiflora	Rmu_sc0004932.1_g000009
rosa_roxburghii	Rroxscaffold_5G00362280
rosa_rugosa	Rorug04G0158100 Rorug04G0158100
rosa_samantha	Rh4AG219900 Rh4BG221500 Rh4CG232700 Rh4DG218900
rosa_wichuraiana	Rw4G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	117
AccB1I	GGYRCC	1 cut(s)	93
AciI	CCGC	3 cut(s)	79, 142, 151
AcyI	GRCGYC	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	5 cut(s)	8, 53, 243, 298, 303
AluI	AGCT	5 cut(s)	8, 53, 243, 298, 303
Alw21I	GWGCWC	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	3 cut(s)	73, 103, 196
AspLEI	GCGC	2 cut(s)	67, 174
AspS9I	GGNCC	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	2 cut(s)	122, 202
AsuNHI	GCTAGC	1 cut(s)	49
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	317
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	85, 115, 183
BciT130I	CCWGG	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	108
BfaI	CTAG	2 cut(s)	50, 230
BfoI	RGCGCY	2 cut(s)	68, 175
BisI	GCNGC	3 cut(s)	74, 104, 197
BlpI	GCTNAGC	1 cut(s)	299
BlsI	GCNGC	3 cut(s)	75, 105, 198
Bme1390I	CCNGG	2 cut(s)	108, 286
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	2 cut(s)	95, 214
BmrFI	CCNGG	2 cut(s)	108, 286
BmsI	GCATC	2 cut(s)	43, 97
BmtI	GCTAGC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	310
Bpu10I	CCTNAGC	1 cut(s)	69
Bpu1102I	GCTNAGC	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	2 cut(s)	255, 327
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	83, 290
BseNI	ACTGG	2 cut(s)	255, 327
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	3 cut(s)	85, 115, 183
BshFI	GGCC	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	317
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	100, 108
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	124
BsoBI	CYCGRG	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp1720I	GCTNAGC	1 cut(s)	299
BspACI	CCGC	3 cut(s)	79, 142, 151
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	2 cut(s)	82, 291
BspLI	GGNNCC	2 cut(s)	95, 214
BspOI	GCTAGC	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	2 cut(s)	255, 327
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	284
BssNI	GRCGYC	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	157
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	51, 55
BstDEI	CTNAG	2 cut(s)	69, 299
BstH2I	RGCGCY	2 cut(s)	68, 175
BstHHI	GCGC	2 cut(s)	67, 174
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 100, 150, 295
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	106, 284
BstV1I	GCAGC	3 cut(s)	85, 115, 183
BsuRI	GGCC	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	51, 55
CfoI	GCGC	2 cut(s)	67, 174
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	1 cut(s)	260
DdeI	CTNAG	2 cut(s)	69, 299
DrdI	GACNNNNNNGTC	1 cut(s)	117
DseDI	GACNNNNNNGTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	284
FaiI	YATR	1 cut(s)	260
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
Fnu4HI	GCNGC	3 cut(s)	74, 104, 197
Fsp4HI	GCNGC	3 cut(s)	74, 104, 197
FspBI	CTAG	2 cut(s)	50, 230
GlaI	GCGC	2 cut(s)	66, 173
GluI	GCNGC	3 cut(s)	74, 104, 197
GsuI	CTGGAG	1 cut(s)	310
HaeII	RGCGCY	2 cut(s)	68, 175
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	2 cut(s)	100, 108
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	2 cut(s)	67, 174
Hin1I	GRCGYC	1 cut(s)	252
Hin6I	GCGC	2 cut(s)	65, 172
HinP1I	GCGC	2 cut(s)	65, 172
HpaII	CCGG	2 cut(s)	100, 108
HphI	GGTGA	2 cut(s)	122, 202
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	3 cut(s)	24, 217, 250
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	3 cut(s)	123, 190, 221
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	3 cut(s)	19, 147, 225
HpyCH4V	TGCA	3 cut(s)	34, 88, 199
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 100, 150, 295
HpyF3I	CTNAG	2 cut(s)	69, 299
HpySE526I	ACGT	3 cut(s)	19, 147, 225
Hsp92I	GRCGYC	1 cut(s)	252
HspAI	GCGC	2 cut(s)	65, 172
LmnI	GCTCC	2 cut(s)	218, 320
LpnPI	CCDG	7 cut(s)	113, 121, 268, 271, 295, 298, 340
Lsp1109I	GCAGC	3 cut(s)	85, 115, 183
LweI	GCATC	2 cut(s)	43, 97
MaeI	CTAG	2 cut(s)	50, 230
MaeII	ACGT	3 cut(s)	19, 147, 225
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	3 cut(s)	137, 339, 358
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	8 cut(s)	69, 78, 93, 123, 135, 138, 186, 334
MseI	TTAA	2 cut(s)	177, 305
MspI	CCGG	2 cut(s)	100, 108
MspR9I	CCNGG	2 cut(s)	108, 286
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	4 cut(s)	73, 100, 150, 295
NciI	CCSGG	1 cut(s)	108
NheI	GCTAGC	1 cut(s)	49
NlaIV	GGNNCC	2 cut(s)	95, 214
PaeR7I	CTCGAG	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PctI	GAATGC	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	75, 105, 198
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	95, 214
PspPI	GGNCC	1 cut(s)	110
PspXI	VCTCGAGB	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	177, 305
SatI	GCNGC	3 cut(s)	74, 104, 197
Sau96I	GGNCC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	108, 286
SduI	GDGCHC	1 cut(s)	317
SfaNI	GCATC	2 cut(s)	43, 97
Sfr274I	CTCGAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	110
SlaI	CTCGAG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	3 cut(s)	137, 339, 358
SsiI	CCGC	3 cut(s)	79, 142, 151
SspMI	CTAG	2 cut(s)	50, 230
StyD4I	CCNGG	2 cut(s)	106, 284
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	3 cut(s)	22, 150, 228
TaqI	TCGA	2 cut(s)	61, 291
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	3 cut(s)	137, 339, 358
Tru1I	TTAA	2 cut(s)	177, 305
Tru9I	TTAA	2 cut(s)	177, 305
TseI	GCWGC	3 cut(s)	73, 103, 196
VpaK11BI	GGWCC	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	60
XspI	CTAG	2 cut(s)	50, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.