Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008069

Physical Location & Seq

Genomic Coordinates Reverse (-)

11156274 .. 11156774

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g15140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCGAGGCCACGATCGGATCAACGCGTGTCTCCCCGACGAGCTGATCGTCGAGGTCTTCCGGCTCCTCGACTCCAAGCCCAGCCGCGACGCCTGCTCTCTCGTCTGCAACCGCTGGCTCTCCCTCGAGCGCCTCAGCCGCACAACCCTCCGCATCTGCGCCACCGGCAGCCCCGACTTTGTCGTCGACCTCCTCGCCCGCCGCTTCCGAAACGTCCGCACCGTTCACATTAACGAGCGCCTCAGCATTTCGCTCCCTACTCCCCCCGGGAGGAGGCGCGCGACTGACATTGCGGCGGTTTCGTCGGTGAGGCTGCATTCTGCCAATGGGTCCGATGACGGCGTGCTTGATTCGAACAGCTTATCGGCGACGGATTCCCCAAGCTCGAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like LRR_6

Protein Analysis

132

Amino Acids

14.43

Weight (kDa)

9.29

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15475
fragaria_vesca	FvH4_4g14060 FvH4_4g14060 FvH4_4g14060 FvH4_4g14060
malus_domestica	MD13G1179300.v1.1 MD16G1180300.v1.1
prunus_persica	Prupe.1G147900_v2.0.a1 Prupe.1G147900_v2.0.a1
pyrus_communis	pycom12g02670 pycom13g15470 pycom15g23770 pycom16g15140
rosa_chinensis	RchiOBHm_Chr4g0419291
rosa_laevigata	RLG00000007818
rosa_multiflora	Rmu_sc0004932.1_g000009
rosa_roxburghii	Rroxscaffold_5G00362280
rosa_rugosa	Rorug04G0158100 Rorug04G0158100
rosa_samantha	Rh4AG219900 Rh4BG221500 Rh4CG232700 Rh4DG218900
rosa_wichuraiana	Rw4G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	186
AccII	CGCG	4 cut(s)	26, 87, 279, 281
AciI	CCGC	9 cut(s)	85, 112, 139, 151, 199, 202, 217, 293, 296
AclWI	GGATC	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	270, 273
AflIII	ACRYGT	1 cut(s)	24
AluBI	AGCT	3 cut(s)	43, 360, 384
AluI	AGCT	3 cut(s)	43, 360, 384
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	26
Ama87I	CYCGRG	2 cut(s)	125, 266
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	2 cut(s)	168, 313
AspLEI	GCGC	5 cut(s)	132, 161, 240, 279, 281
AspS9I	GGNCC	1 cut(s)	330
AsuC2I	CCSGG	2 cut(s)	267, 268
AsuHPI	GGTGA	1 cut(s)	319
AsuII	TTCGAA	1 cut(s)	353
AvaI	CYCGRG	2 cut(s)	125, 266
AvaII	GGWCC	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	49
BbvCI	CCTCAGC	2 cut(s)	134, 242
BbvI	GCAGC	2 cut(s)	180, 300
BceAI	ACGGC	1 cut(s)	355
BcnI	CCSGG	2 cut(s)	267, 268
BcoDI	GTCTC	1 cut(s)	35
BfoI	RGCGCY	2 cut(s)	133, 241
BisI	GCNGC	6 cut(s)	85, 139, 169, 202, 294, 314
BlsI	GCNGC	6 cut(s)	86, 140, 170, 203, 295, 315
Bme1390I	CCNGG	2 cut(s)	267, 268
Bme18I	GGWCC	1 cut(s)	330
BmeT110I	CYCGRG	2 cut(s)	125, 266
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	2 cut(s)	65, 331
BmrFI	CCNGG	2 cut(s)	267, 268
BmsI	GCATC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	49
Bpu10I	CCTNAGC	2 cut(s)	134, 242
Bpu14I	TTCGAA	1 cut(s)	353
BpuMI	CCSGG	2 cut(s)	267, 268
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	265, 266
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 273
Bse118I	RCCGGY	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	265, 266
BseLI	CCNNNNNNNGG	2 cut(s)	270, 273
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	148, 256
BsePI	GCGCGC	1 cut(s)	277
BseRI	GAGGAG	3 cut(s)	56, 182, 286
BseXI	GCAGC	2 cut(s)	180, 300
BseYI	CCCAGC	1 cut(s)	80
Bsh1236I	CGCG	4 cut(s)	26, 87, 279, 281
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	16
BsiHKCI	CYCGRG	2 cut(s)	125, 266
BsiSI	CCGG	3 cut(s)	61, 165, 267
BslI	CCNNNNNNNGG	2 cut(s)	270, 273
BsmAI	GTCTC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	9
BsoBI	CYCGRG	2 cut(s)	125, 266
Bsp119I	TTCGAA	1 cut(s)	353
Bsp143I	GATC	3 cut(s)	13, 18, 45
BspACI	CCGC	9 cut(s)	85, 112, 139, 151, 199, 202, 217, 293, 296
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	2 cut(s)	147, 255
BspFNI	CGCG	4 cut(s)	26, 87, 279, 281
BspLI	GGNNCC	2 cut(s)	65, 331
BspPI	GGATC	1 cut(s)	26
BspT104I	TTCGAA	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	265, 266
BssHII	GCGCGC	1 cut(s)	277
BssMI	GATC	3 cut(s)	13, 18, 45
BssNI	GRCGYC	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	223
BstACI	GRCGYC	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	353
BstC8I	GCNNGC	5 cut(s)	94, 116, 199, 279, 344
BstDEI	CTNAG	2 cut(s)	134, 242
BstFNI	CGCG	4 cut(s)	26, 87, 279, 281
BstH2I	RGCGCY	2 cut(s)	133, 241
BstHHI	GCGC	5 cut(s)	132, 161, 240, 279, 281
BstKTI	GATC	3 cut(s)	16, 21, 48
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	3 cut(s)	13, 18, 45
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 138, 165
BstSCI	CCNGG	2 cut(s)	265, 266
BstUI	CGCG	4 cut(s)	26, 87, 279, 281
BstV1I	GCAGC	2 cut(s)	180, 300
BstV2I	GAAGAC	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	9
Cac8I	GCNNGC	5 cut(s)	94, 116, 199, 279, 344
CfoI	GCGC	5 cut(s)	132, 161, 240, 279, 281
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	330
Cfr9I	CCCGGG	1 cut(s)	266
CseI	GACGC	1 cut(s)	98
DdeI	CTNAG	2 cut(s)	134, 242
DpnI	GATC	3 cut(s)	15, 20, 47
DpnII	GATC	3 cut(s)	13, 18, 45
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	330
Eco88I	CYCGRG	2 cut(s)	125, 266
FauI	CCCGC	1 cut(s)	206
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	6 cut(s)	85, 139, 169, 202, 294, 314
Fsp4HI	GCNGC	6 cut(s)	85, 139, 169, 202, 294, 314
GlaI	GCGC	5 cut(s)	131, 160, 239, 278, 280
GluI	GCNGC	6 cut(s)	85, 139, 169, 202, 294, 314
GsaI	CCCAGC	1 cut(s)	84
HaeII	RGCGCY	2 cut(s)	133, 241
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	3 cut(s)	61, 165, 267
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	5 cut(s)	132, 161, 240, 279, 281
Hin1I	GRCGYC	1 cut(s)	90
Hin6I	GCGC	5 cut(s)	130, 159, 238, 277, 279
HinP1I	GCGC	5 cut(s)	130, 159, 238, 277, 279
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	3 cut(s)	71, 350, 374
HpaII	CCGG	3 cut(s)	61, 165, 267
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	2 cut(s)	187, 226
Hpy188I	TCNGA	3 cut(s)	18, 209, 334
Hpy8I	GTNNAC	2 cut(s)	187, 226
Hpy99I	CGWCG	6 cut(s)	41, 53, 92, 188, 307, 373
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	2 cut(s)	108, 316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 138, 165
HpyF3I	CTNAG	2 cut(s)	134, 242
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	90
HspAI	GCGC	5 cut(s)	130, 159, 238, 277, 279
Kzo9I	GATC	3 cut(s)	13, 18, 45
LmnI	GCTCC	2 cut(s)	69, 258
LpnPI	CCDG	6 cut(s)	74, 94, 100, 106, 178, 280
Lsp1109I	GCAGC	2 cut(s)	180, 300
LweI	GCATC	1 cut(s)	162
MaeII	ACGT	1 cut(s)	213
MalI	GATC	3 cut(s)	15, 20, 47
MboI	GATC	3 cut(s)	13, 18, 45
MboII	GAAGA	1 cut(s)	49
MluI	ACGCGT	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	65
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	114
MspI	CCGG	3 cut(s)	61, 165, 267
MspR9I	CCNGG	2 cut(s)	267, 268
Mva1269I	GAATGC	1 cut(s)	316
MvnI	CGCG	4 cut(s)	26, 87, 279, 281
MwoI	GCNNNNNNNGC	3 cut(s)	93, 138, 165
NciI	CCSGG	2 cut(s)	267, 268
NdeII	GATC	3 cut(s)	13, 18, 45
NlaIV	GGNNCC	2 cut(s)	65, 331
NspV	TTCGAA	1 cut(s)	353
PaeR7I	CTCGAG	1 cut(s)	125
PauI	GCGCGC	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 219
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	350, 374
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	6 cut(s)	86, 140, 170, 203, 295, 315
Ple19I	CGATCG	1 cut(s)	16
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	80
PspN4I	GGNNCC	2 cut(s)	65, 331
PspPI	GGNCC	1 cut(s)	330
PspXI	VCTCGAGB	1 cut(s)	125
PsyI	GACNNNGTC	1 cut(s)	179
PteI	GCGCGC	1 cut(s)	277
PvuI	CGATCG	1 cut(s)	16
SalI	GTCGAC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	6 cut(s)	85, 139, 169, 202, 294, 314
Sau3AI	GATC	3 cut(s)	13, 18, 45
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	267, 268
SetI	ASST	6 cut(s)	45, 57, 192, 216, 362, 386
SfaNI	GCATC	1 cut(s)	162
Sfr274I	CTCGAG	1 cut(s)	125
SfuI	TTCGAA	1 cut(s)	353
SinI	GGWCC	1 cut(s)	330
SlaI	CTCGAG	1 cut(s)	125
SmaI	CCCGGG	1 cut(s)	268
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SsiI	CCGC	9 cut(s)	85, 112, 139, 151, 199, 202, 217, 293, 296
StyD4I	CCNGG	2 cut(s)	265, 266
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	6 cut(s)	51, 69, 126, 186, 353, 386
TauI	GCSGC	4 cut(s)	87, 141, 204, 296
TfiI	GAWTC	2 cut(s)	350, 374
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseI	GCWGC	2 cut(s)	168, 313
TspGWI	ACGGA	1 cut(s)	386
TspMI	CCCGGG	1 cut(s)	266
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	330
XhoI	CTCGAG	1 cut(s)	125
XmaI	CCCGGG	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.