Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008069

Physical Location & Seq

Genomic Coordinates Reverse (-)

17904430 .. 17904779

Gene Structure 350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g23770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGGTTACTTGACTCCAAGCCCAGCAGTGATGCCTGCTCCCTCGTCTGCAAGCGATAGCACCGCCCTCTGCATCAGCACCATCGGCAGCCCGGACCTCATCGTCGGCCGCCTCCGCCTTAACCTTTCGTCGGTGAGGCTGCATTCTGCCAATGGCTCCGACGACAACGTGCTTGATTTGAACAGCTTATGGGACGCCGGTATGACTGCTATCAGCGACAGATTACCCAGGCTCGAAAAGCTGAGCTTAATCTGGTGCTCCAATGCCTCCAGTATCGGTCTAATTTTGCTGAGAAGTGTAAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like LRR_6

Protein Analysis

103

Amino Acids

10.76

Weight (kDa)

5.54

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15475
fragaria_vesca	FvH4_4g14060 FvH4_4g14060 FvH4_4g14060 FvH4_4g14060
malus_domestica	MD13G1179300.v1.1 MD16G1180300.v1.1
prunus_persica	Prupe.1G147900_v2.0.a1 Prupe.1G147900_v2.0.a1
pyrus_communis	pycom12g02670 pycom13g15470 pycom15g23770 pycom16g15140
rosa_chinensis	RchiOBHm_Chr4g0419291
rosa_laevigata	RLG00000007818
rosa_multiflora	Rmu_sc0004932.1_g000009
rosa_roxburghii	Rroxscaffold_5G00362280
rosa_rugosa	Rorug04G0158100 Rorug04G0158100
rosa_samantha	Rh4AG219900 Rh4BG221500 Rh4CG232700 Rh4DG218900
rosa_wichuraiana	Rw4G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AciI	CCGC	3 cut(s)	63, 109, 115
AcoI	YGGCCR	1 cut(s)	106
AcyI	GRCGYC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	3 cut(s)	186, 241, 246
AluI	AGCT	3 cut(s)	186, 241, 246
Alw21I	GWGCWC	1 cut(s)	260
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	87, 139
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	99, 126
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	92
BisI	GCNGC	3 cut(s)	88, 109, 140
BlpI	GCTNAGC	1 cut(s)	242
BlsI	GCNGC	3 cut(s)	89, 110, 141
Bme1390I	CCNGG	2 cut(s)	92, 229
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	92, 229
BmsI	GCATC	2 cut(s)	21, 81
BpmI	CTGGAG	1 cut(s)	253
Bpu1102I	GCTNAGC	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	233, 281
BseNI	ACTGG	1 cut(s)	270
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	99, 126
BseYI	CCCAGC	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	92, 198
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp1720I	GCTNAGC	1 cut(s)	242
BspACI	CCGC	3 cut(s)	63, 109, 115
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	2 cut(s)	234, 282
BspLI	GGNNCC	1 cut(s)	157
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	227
BssNI	GRCGYC	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	36, 52
BstDEI	CTNAG	2 cut(s)	242, 290
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 114, 238
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	90, 227
BstV1I	GCAGC	2 cut(s)	99, 126
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	108
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	36, 52
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	1 cut(s)	203
CviJI	RGCY	9 cut(s)	21, 90, 108, 139, 156, 186, 232, 241, 246
CviKI_1	RGCY	9 cut(s)	21, 90, 108, 139, 156, 186, 232, 241, 246
DdeI	CTNAG	2 cut(s)	242, 290
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	104
EclXI	CGGCCG	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	94
Eco52I	CGGCCG	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	227
FaiI	YATR	2 cut(s)	190, 203
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	1 cut(s)	206
Fnu4HI	GCNGC	3 cut(s)	88, 109, 140
Fsp4HI	GCNGC	3 cut(s)	88, 109, 140
GluI	GCNGC	3 cut(s)	88, 109, 140
GsaI	CCCAGC	1 cut(s)	26
GsuI	CTGGAG	1 cut(s)	253
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	2 cut(s)	92, 198
HgaI	GACGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	195
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	2 cut(s)	92, 198
HphI	GGTGA	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	160
Hpy99I	CGWCG	3 cut(s)	107, 133, 164
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	3 cut(s)	50, 72, 142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 114, 238
HpyF3I	CTNAG	2 cut(s)	242, 290
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	195
LmnI	GCTCC	3 cut(s)	43, 161, 263
LpnPI	CCDG	8 cut(s)	36, 48, 105, 211, 214, 238, 241, 283
Lsp1109I	GCAGC	2 cut(s)	99, 126
LweI	GCATC	2 cut(s)	21, 81
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	5
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	2 cut(s)	282, 301
MlyI	GAGTC	1 cut(s)	7
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	6 cut(s)	52, 77, 107, 122, 129, 277
MseI	TTAA	2 cut(s)	120, 248
MspI	CCGG	2 cut(s)	92, 198
MspR9I	CCNGG	2 cut(s)	92, 229
Mva1269I	GAATGC	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	3 cut(s)	84, 114, 238
NciI	CCSGG	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	157
PctI	GAATGC	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	89, 110, 141
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	227
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	94
SaqAI	TTAA	2 cut(s)	120, 248
SatI	GCNGC	3 cut(s)	88, 109, 140
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	92, 229
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	6 cut(s)	99, 126, 171, 188, 243, 248
SfaNI	GCATC	2 cut(s)	21, 81
SinI	GGWCC	1 cut(s)	94
Sse9I	AATT	2 cut(s)	282, 301
SsiI	CCGC	3 cut(s)	63, 109, 115
StyD4I	CCNGG	2 cut(s)	90, 227
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	234
TaqII	GACCGA	1 cut(s)	266
TasI	AATT	2 cut(s)	282, 301
TauI	GCSGC	1 cut(s)	111
Tru1I	TTAA	2 cut(s)	120, 248
Tru9I	TTAA	2 cut(s)	120, 248
TscAI	CASTG	1 cut(s)	33
TseI	GCWGC	2 cut(s)	87, 139
TspRI	CASTG	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.