Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005341

Physical Location & Seq

Genomic Coordinates Forward (+)

5505956 .. 5507472

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g05620.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCAACACTGTGTTGCAAGGCTAGATGTGGCAATGTTCAATGCTATCCTGCGTGAGTCTGCCCATGAGATCCCTACTGATCCAGTATCAGATCCTATTCTTGATTCCAGGGTTTTACCTATTCCTGCTGGCGACTTGAGTTTTGGGTCTGGTGCACAACTCAAAAATTCCGTTGGAAATTGGTCTAGATGGCTACGTGATTTGTTTGACATGGATGCTGATAATTCCCTGCAAGAAGACCACCTTCTTGGTGAGGATGATGACAGGCAGATTGGCGATGGTGAATCTAAATCCTTCCTTCTTCTGAATGCCTTGAGTGATCTTTTGATGCTTCCGAAAGACTTGCTTATTGATACGAGAATCAGAAAGGAGGTCTGCCCATCAATTAGTCTTCCATTAGTTAAGCGGATACTTTGTAACTTCACTCCAGATGAGTTCTGTCCGGATGCTGTGCCAGGAGCTGTATTGGAGGCACTGAATGCCGAGAGCATTGTGGAGCGCAGATTGTCAGGTGAATCGGCAAGAAGCTTCCCTTACACAGCAGCACCAGTTGTGTACACCCCACCTTCGTCGGCTGATATGGCAGAAAAAGTTTCAGAAGCAGGAGGAAGTTCTCAACTGGAAAGGGACGTCTCAGCTGTACAGAGAAAGGGATATACCAGCGATGAAGAGCTAGAGGAGTTGGATTCACCTCTTTCATCCATCATCGGCAAATTACCGTTAACTCCGACTATCATAGCAAATGGAAATGGAAGCGGAAAACATGAGCATGCAGGTCATGCCTGCACGAATGCGAGGTATGAACTCCTTCGTGAGGTGTGGTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

30.05

Weight (kDa)

4.63

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42320 AT2G42320 AT2G42320 AT2G42320
fragaria_vesca	FvH4_6g23000 FvH4_6g23000 FvH4_6g23000 FvH4_6g23000 FvH4_6g23000
malus_domestica	MD12G1064400.v1.1 MD14G1064600.v1.1
prunus_persica	Prupe.7G069500_v2.0.a1 Prupe.7G069500_v2.0.a1 Prupe.7G069500_v2.0.a1 Prupe.7G069500_v2.0.a1
pyrus_communis	pycom12g05620 pycom14g05230
rosa_chinensis	RchiOBHm_Chr3g0480801
rosa_laevigata	RLG00000023451
rosa_multiflora	Rmu_sc0007944.1_g000009 Rmu_sc0009130.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401060
rosa_rugosa	Rorug03G0186500 Rorug03G0186600
rosa_samantha	Rh3AG238000 Rh3BG271600 Rh3CG267500 Rh3DG263800
rosa_wichuraiana	Rw3G021320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	633
Acc36I	ACCTGC	1 cut(s)	764
AccIII	TCCGGA	1 cut(s)	442
AciI	CCGC	2 cut(s)	406, 756
AclWI	GGATC	3 cut(s)	64, 74, 86
AcsI	RAATTY	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	630
AfaI	GTAC	2 cut(s)	557, 642
AfiI	CCNNNNNNNGG	1 cut(s)	814
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	107, 454
AluBI	AGCT	4 cut(s)	461, 528, 638, 673
AluI	AGCT	4 cut(s)	461, 528, 638, 673
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	637
Alw44I	GTGCAC	1 cut(s)	153
AlwI	GGATC	3 cut(s)	64, 74, 86
AlwNI	CAGNNNCTG	1 cut(s)	461
Aor13HI	TCCGGA	1 cut(s)	442
ApaLI	GTGCAC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	1 cut(s)	166
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
Asp700I	GAANNNNTTC	1 cut(s)	807
AspLEI	GCGC	1 cut(s)	501
AsuHPI	GGTGA	4 cut(s)	263, 293, 524, 681
BaeGI	GKGCMC	1 cut(s)	157
BbsI	GAAGAC	2 cut(s)	243, 383
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	4 cut(s)	183, 272, 388, 710
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	2 cut(s)	109, 456
BciVI	GTATCC	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	637
BfaI	CTAG	3 cut(s)	23, 186, 674
BfuAI	ACCTGC	1 cut(s)	764
BfuI	GTATCC	1 cut(s)	402
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
Bme1390I	CCNGG	2 cut(s)	109, 456
BmrFI	CCNGG	2 cut(s)	109, 456
BmsI	GCATC	3 cut(s)	205, 318, 436
BpiI	GAAGAC	2 cut(s)	243, 383
BpmI	CTGGAG	1 cut(s)	411
BpuEI	CTTGAG	2 cut(s)	157, 334
BsaAI	YACGTR	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	630
BsaJI	CCNNGG	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	1 cut(s)	814
Bse1I	ACTGG	3 cut(s)	83, 548, 624
Bse3DI	GCAATG	1 cut(s)	39
BseAI	TCCGGA	1 cut(s)	442
BseBI	CCWGG	2 cut(s)	109, 456
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	4 cut(s)	220, 262, 451, 698
BseLI	CCNNNNNNNGG	1 cut(s)	814
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	648
BseNI	ACTGG	3 cut(s)	83, 548, 624
BseRI	GAGGAG	1 cut(s)	692
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	554
BsgI	GTGCAG	1 cut(s)	769
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	814
BsmAI	GTCTC	1 cut(s)	637
BsmBI	CGTCTC	1 cut(s)	637
BsmFI	GGGAC	1 cut(s)	641
BsmI	GAATGC	3 cut(s)	313, 484, 796
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp13I	TCCGGA	1 cut(s)	442
Bsp1407I	TGTACA	2 cut(s)	555, 640
Bsp143I	GATC	4 cut(s)	69, 79, 91, 319
BspACI	CCGC	2 cut(s)	406, 756
BspCNI	CTCAG	1 cut(s)	647
BspEI	TCCGGA	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	764
BspPI	GGATC	3 cut(s)	64, 74, 86
BspQI	GCTCTTC	1 cut(s)	663
BsrDI	GCAATG	1 cut(s)	39
BsrGI	TGTACA	2 cut(s)	555, 640
BsrI	ACTGG	3 cut(s)	83, 548, 624
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	4 cut(s)	69, 79, 91, 319
BssNI	GRCGYC	1 cut(s)	630
Bst2UI	CCWGG	2 cut(s)	109, 456
Bst4CI	ACNGT	2 cut(s)	11, 720
Bst6I	CTCTTC	1 cut(s)	663
BstACI	GRCGYC	1 cut(s)	630
BstAPI	GCANNNNNTGC	2 cut(s)	479, 779
BstAUI	TGTACA	2 cut(s)	555, 640
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	130, 771, 784
BstDEI	CTNAG	1 cut(s)	634
BstENI	CCTNNNNNAGG	1 cut(s)	812
BstF5I	GGATG	4 cut(s)	220, 262, 451, 698
BstHHI	GCGC	1 cut(s)	501
BstKTI	GATC	4 cut(s)	72, 82, 94, 322
BstMAI	GTCTC	1 cut(s)	637
BstMBI	GATC	4 cut(s)	69, 79, 91, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 581, 779
BstNI	CCWGG	2 cut(s)	109, 456
BstNSI	RCATGY	1 cut(s)	773
BstSCI	CCNGG	2 cut(s)	107, 454
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	554
BstV2I	GAAGAC	2 cut(s)	243, 383
BstX2I	RGATCY	2 cut(s)	69, 91
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	2 cut(s)	69, 91
BsuI	GTATCC	1 cut(s)	402
BtgZI	GCGATG	2 cut(s)	291, 678
BtsCI	GGATG	4 cut(s)	220, 262, 451, 698
BtsIMutI	CAGTG	2 cut(s)	7, 473
BveI	ACCTGC	1 cut(s)	764
Cac8I	GCNNGC	3 cut(s)	130, 771, 784
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	1 cut(s)	501
Csp6I	GTAC	2 cut(s)	556, 641
CviAII	CATG	5 cut(s)	65, 211, 764, 770, 779
CviJI	RGCY	7 cut(s)	22, 193, 461, 528, 575, 638, 673
CviKI_1	RGCY	7 cut(s)	22, 193, 461, 528, 575, 638, 673
CviQI	GTAC	2 cut(s)	556, 641
DdeI	CTNAG	1 cut(s)	634
DpnI	GATC	4 cut(s)	71, 81, 93, 321
DpnII	GATC	4 cut(s)	69, 79, 91, 319
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
EcoNI	CCTNNNNNAGG	1 cut(s)	812
EcoRII	CCWGG	2 cut(s)	107, 454
Esp3I	CGTCTC	1 cut(s)	637
FaeI	CATG	5 cut(s)	68, 214, 767, 773, 782
FaiI	YATR	9 cut(s)	66, 212, 581, 657, 737, 765, 771, 780, 801
FalI	AAGNNNNNCTT	6 cut(s)	228, 260, 330, 362, 517, 549
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	5 cut(s)	64, 210, 763, 769, 778
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	4 cut(s)	227, 269, 458, 685
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	3 cut(s)	23, 186, 674
GlaI	GCGC	1 cut(s)	500
GluI	GCNGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	411
HapII	CCGG	1 cut(s)	443
HhaI	GCGC	1 cut(s)	501
Hin1I	GRCGYC	1 cut(s)	630
Hin1II	CATG	5 cut(s)	68, 214, 767, 773, 782
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HincII	GTYRAC	1 cut(s)	723
HindII	GTYRAC	1 cut(s)	723
HindIII	AAGCTT	1 cut(s)	526
HinfI	GANTC	6 cut(s)	56, 104, 284, 360, 515, 686
HpaI	GTTAAC	1 cut(s)	723
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	4 cut(s)	263, 293, 524, 681
Hpy166II	GTNNAC	4 cut(s)	155, 556, 558, 723
Hpy188I	TCNGA	6 cut(s)	91, 306, 336, 365, 598, 729
Hpy188III	TCNNGA	5 cut(s)	101, 186, 428, 443, 812
Hpy8I	GTNNAC	4 cut(s)	155, 556, 558, 723
Hpy99I	CGWCG	1 cut(s)	574
HpyAV	CCTTC	5 cut(s)	254, 304, 308, 576, 818
HpyCH4III	ACNGT	2 cut(s)	11, 720
HpyCH4IV	ACGT	2 cut(s)	196, 630
HpyCH4V	TGCA	6 cut(s)	4, 17, 155, 232, 773, 786
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 581, 779
HpyF3I	CTNAG	1 cut(s)	634
HpySE526I	ACGT	2 cut(s)	196, 630
Hsp92I	GRCGYC	1 cut(s)	630
Hsp92II	CATG	5 cut(s)	68, 214, 767, 773, 782
HspAI	GCGC	1 cut(s)	499
Kpn2I	TCCGGA	1 cut(s)	442
KspAI	GTTAAC	1 cut(s)	723
Kzo9I	GATC	4 cut(s)	69, 79, 91, 319
LguI	GCTCTTC	1 cut(s)	663
LmnI	GCTCC	2 cut(s)	458, 496
Lsp1109I	GCAGC	1 cut(s)	554
LweI	GCATC	3 cut(s)	205, 318, 436
MaeI	CTAG	3 cut(s)	23, 186, 674
MaeII	ACGT	2 cut(s)	196, 630
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	4 cut(s)	71, 81, 93, 321
MboI	GATC	4 cut(s)	69, 79, 91, 319
MboII	GAAGA	4 cut(s)	248, 293, 383, 680
MflI	RGATCY	2 cut(s)	69, 91
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	5 cut(s)	166, 178, 223, 384, 713
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	3 cut(s)	154, 663, 752
MnlI	CCTC	8 cut(s)	247, 364, 463, 599, 670, 702, 789, 808
MroI	TCCGGA	1 cut(s)	442
MroXI	GAANNNNTTC	1 cut(s)	807
MseI	TTAA	3 cut(s)	402, 722, 829
MslI	CAYNNNNRTG	1 cut(s)	768
MspA1I	CMGCKG	1 cut(s)	638
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	109, 456
Mva1269I	GAATGC	3 cut(s)	313, 484, 796
MvaI	CCWGG	2 cut(s)	109, 456
MwoI	GCNNNNNNNGC	3 cut(s)	479, 581, 779
NdeII	GATC	4 cut(s)	69, 79, 91, 319
NlaIII	CATG	5 cut(s)	68, 214, 767, 773, 782
NmeAIII	GCCGAG	1 cut(s)	508
NspI	RCATGY	1 cut(s)	773
PaeI	GCATGC	1 cut(s)	773
PciSI	GCTCTTC	1 cut(s)	663
PctI	GAATGC	3 cut(s)	313, 484, 796
PdmI	GAANNNNTTC	1 cut(s)	807
PfeI	GAWTC	5 cut(s)	104, 284, 360, 515, 686
PkrI	GCNGC	1 cut(s)	544
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	107, 454
PspGI	CCWGG	2 cut(s)	107, 454
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	2 cut(s)	69, 91
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	2 cut(s)	557, 642
RsaNI	GTAC	2 cut(s)	556, 641
RseI	CAYNNNNRTG	1 cut(s)	768
SapI	GCTCTTC	1 cut(s)	663
SaqAI	TTAA	3 cut(s)	402, 722, 829
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	4 cut(s)	69, 79, 91, 319
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	109, 456
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	3 cut(s)	205, 318, 436
SmiMI	CAYNNNNRTG	1 cut(s)	768
SmlI	CTYRAG	2 cut(s)	136, 313
SmoI	CTYRAG	2 cut(s)	136, 313
SphI	GCATGC	1 cut(s)	773
Sse9I	AATT	5 cut(s)	166, 178, 223, 384, 713
SsiI	CCGC	2 cut(s)	406, 756
SspMI	CTAG	3 cut(s)	23, 186, 674
StyD4I	CCNGG	2 cut(s)	107, 454
TaaI	ACNGT	2 cut(s)	11, 720
TaiI	ACGT	2 cut(s)	199, 633
TasI	AATT	5 cut(s)	166, 178, 223, 384, 713
TatI	WGTACW	2 cut(s)	555, 640
TfiI	GAWTC	5 cut(s)	104, 284, 360, 515, 686
Tru1I	TTAA	3 cut(s)	402, 722, 829
Tru9I	TTAA	3 cut(s)	402, 722, 829
TscAI	CASTG	2 cut(s)	14, 480
TseI	GCWGC	1 cut(s)	542
TspDTI	ATGAA	3 cut(s)	681, 687, 816
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	2 cut(s)	14, 480
VneI	GTGCAC	1 cut(s)	153
XagI	CCTNNNNNAGG	1 cut(s)	812
XapI	RAATTY	1 cut(s)	166
XbaI	TCTAGA	1 cut(s)	185
XceI	RCATGY	1 cut(s)	773
XmnI	GAANNNNTTC	1 cut(s)	807
XspI	CTAG	3 cut(s)	23, 186, 674
ZraI	GACGTC	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.