Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010365

Physical Location & Seq

Genomic Coordinates Reverse (-)

17124552 .. 17128737

Gene Structure 4186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1854 bp

ATGGCTGAGGGTTTCGAGCCCTACCATGTGCCCCAACAGAGCAGAAGGGACAAGCTCCGGGTCCTGGCGGGTCAAGCCCACCCCGATTGCCTCCAACCCGGATCACCATCTCCTCCTCCATCACATCTCCACCATGCTTTGCTCCCTCTCTCATACGATCCCACCACCTCCTTCATCTCCTCCTCAGATTTGCTCATGTGCGCCGAGCCGGCCGTGAAAGAAGAGGGTAGTCATCATCACGTGATCAACCACTTGATGGGTTTTGCTTCCAATTCCACCTCATCTTCTACTTTTCGCCACAACAACCACCATCCTTACATGGATCCACAATTCCCTCTCACTCTTACTGCCGTTCAAGAAATCAACGCCAACCCATTTCTCTGTCCCCCTCAAAACGTCCACCCCCTCAGAGATTTCGACCACCAACAACCTCCCTATGACGATCAAGTCGTCGTCTTCAAACCAGAGCCTCTCTCTCTGTCCCTCTCTTCTTCCCAGCCCACCAACCACACCCACCACACCCAGCAAACCCAGAACAACACAAACAACAACAGTCTCCAGAGATTTTCCTCTCCTGGGATTAATTATGATTCAATAAATTCTGGCGTTAGTGTTGCTTCTGTCCCTTTTGGACCGTTCACGGGGTACGCTTCGATTCTGAAGGGATCTAGGTTTTTAAAGCCGGCGCAGCAGTTGCTGGAGGAGTTTTGCGATGTGAGCAGTCGTGAAATTTACAGCGCGAAAGTCTTGACGGCGGAGGATTCCTCTTCGTTTCTTGACCCTCCTATTGAGAGCTTTGGTGACGACGACTCACTGACGGCTGGGGGAGACGGCGGTCAGAGTACAAGAAAAAAGTCCAGACTAATTTCCATGCTCGACGAGGTTTATAGGAGGTACAAGCAATACTGTCAACAGATGCAGGCAGTGGCAAGGTCATTTGAGTATGTTGCTGGGCTTGGAAATGCAGCTCCTTATGCAAACTTAGCGATAAAAGCCATGGCTAGACATTTTAAGTGTTTGAAGAATGCTATCACTGATCAGCTTCACTCCAGAAATCGGAATGGTAGTCATTTAGGACATGAAAAAGATGAAAGTCCTATGCTTCATAGCAGTAGAAGTGTATATGGCCAGAGATCGATTCATACCTCTGACTTTGTGGATCACCAACCTGTTTGGAGACCACAAAGGGGTCTTCCTGAGCGCGCTGTTACTGTTCTTAGAGCCTGGTTGTTTGAACACTTCCTGCATCCTTATCCTACCGACTCGGATAAATTAATGTTGGCTAAACAAACTGGTCTATCACGAAGCCAGGTTTCAAATTGGTTTATTAATGCAAGAGTAAGGCTATGGAAACCAATGGTGGAAGAAATACACATGCTGGAAACACGGCAAGCCCAAAAAGCTTCACAAAGGGTGGATTTAAGTTCCAATAGATCAAGTGATGATCATTTACCTTCCCCAAACTCGCTGGGATCCGAGAATCCATCCACATCCACCCATAGAGTTCAAGACACCGCATCTAAGCGCACCAGAAGCGAACTTCATGATCATATCACAATGGGGGCTACTGAACAAAGCCTATCTTACAGTAATTTTCCAAGCCATATGCATGTAGGTCATGTTGGTATGAACATGGCAGGTGGGAGTAGTAGTGGTGTGTCTCTAACCCTGGGACTTCACCAAAATAATGGCATTGGTTTTTCAGCTCCCTTTCCTATCAATGCAGCTGAACGTTTTGGCCTTGGCCTTGACGGCAATAGCGAGAACTATGCAATGGTTGGTTTCGAAGCTCAAAATCGGCATTATGGAAGGGATGTCATGGGAGGGCAACTTTTGCACGATTTTGTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0010016 GO:0010051 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010228 GO:0010346 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048439 GO:0048457 GO:0048507 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080006 GO:0080090 GO:0090567 GO:0090698 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905393 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

618

Amino Acids

68.5

Weight (kDa)

6.61

Isoelectric Point (pI)

56.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	219 - 345	5.6e-38	Associated with HOX
Homeobox_KN	PF05920	409 - 448	1.1e-19	Homeobox KN domain
Homeodomain	PF00046	416 - 448	1.1e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02030
fragaria_vesca	FvH4_6g12810 FvH4_6g12810 FvH4_6g12810 FvH4_6g12810
malus_domestica	MD04G1138100.v1.1 MD12G1153600.v1.1
prunus_persica	Prupe.6G263900_v2.0.a1 Prupe.6G263900_v2.0.a1 Prupe.6G263900_v2.0.a1
pyrus_communis	pycom04g12630 pycom12g14630
rosa_chinensis	RchiOBHm_Chr3g0464821
rosa_laevigata	RLG00000024672
rosa_multiflora	Rmu_sc0007114.1_g000006
rosa_roxburghii	Rroxscaffold_6G00415420
rosa_rugosa	Rorug03G0074100.1
rosa_samantha	Rh3BG136800 Rh3CG139400 Rh3DG138200
rosa_wichuraiana	Rw3G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1628
AasI	GACNNNNNNGTC	1 cut(s)	446
Acc36I	ACCTGC	1 cut(s)	1628
AccB7I	CCANNNNNTGG	1 cut(s)	256
AccII	CGCG	2 cut(s)	740, 1203
AciI	CCGC	4 cut(s)	68, 755, 834, 1515
AclI	AACGTT	1 cut(s)	1732
AclWI	GGATC	8 cut(s)	109, 152, 317, 330, 673, 1167, 1467, 1480
AcoI	YGGCCR	2 cut(s)	210, 1126
AcsI	RAATTY	2 cut(s)	598, 729
AcuI	CTGAAG	1 cut(s)	680
AcvI	CACGTG	1 cut(s)	241
AfaI	GTAC	3 cut(s)	647, 844, 896
AfiI	CCNNNNNNNGG	6 cut(s)	64, 256, 576, 641, 1056, 1187
AgsI	TTSAA	7 cut(s)	356, 460, 594, 1021, 1235, 1317, 1508
AjnI	CCWGG	5 cut(s)	63, 574, 1223, 1308, 1668
AluBI	AGCT	8 cut(s)	55, 795, 968, 1042, 1403, 1706, 1727, 1790
AluI	AGCT	8 cut(s)	55, 795, 968, 1042, 1403, 1706, 1727, 1790
Alw26I	GTCTC	4 cut(s)	560, 822, 1171, 1665
AlwI	GGATC	8 cut(s)	109, 152, 317, 330, 673, 1167, 1467, 1480
AlwNI	CAGNNNCTG	1 cut(s)	697
AoxI	GGCC	4 cut(s)	210, 1126, 1738, 1744
ApeKI	GCWGC	3 cut(s)	688, 965, 1724
ApoI	RAATTY	2 cut(s)	598, 729
AseI	ATTAAT	3 cut(s)	582, 1274, 1329
AspLEI	GCGC	6 cut(s)	203, 688, 740, 1203, 1205, 1527
AspS9I	GGNCC	2 cut(s)	61, 632
AsuC2I	CCSGG	2 cut(s)	59, 99
AsuHPI	GGTGA	4 cut(s)	96, 812, 1154, 1670
AsuII	TTCGAA	1 cut(s)	1785
AvaII	GGWCC	2 cut(s)	61, 632
BaeGI	GKGCMC	1 cut(s)	33
BalI	TGGCCA	1 cut(s)	1128
BamHI	GGATCC	2 cut(s)	322, 1472
BanII	GRGCYC	1 cut(s)	21
BbrPI	CACGTG	1 cut(s)	241
BbsI	GAAGAC	2 cut(s)	448, 1184
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	3 cut(s)	700, 977, 1736
BccI	CCATC	5 cut(s)	115, 127, 250, 318, 1492
BceAI	ACGGC	7 cut(s)	197, 335, 768, 834, 847, 1403, 1768
BcgI	CGANNNNNNTGC	2 cut(s)	1751, 1785
BciT130I	CCWGG	5 cut(s)	65, 576, 1225, 1310, 1670
BclI	TGATCA	4 cut(s)	243, 1036, 1444, 1546
BcnI	CCSGG	2 cut(s)	59, 99
BcoDI	GTCTC	4 cut(s)	560, 822, 1171, 1665
BfaI	CTAG	2 cut(s)	669, 1002
BfuAI	ACCTGC	1 cut(s)	1628
BglI	GCCNNNNNGGC	2 cut(s)	209, 1752
BisI	GCNGC	3 cut(s)	689, 966, 1725
BlsI	GCNGC	3 cut(s)	690, 967, 1726
Bme1390I	CCNGG	7 cut(s)	59, 65, 99, 576, 1225, 1310, 1670
Bme18I	GGWCC	2 cut(s)	61, 632
BmgT120I	GGNCC	2 cut(s)	61, 632
BmiI	GGNNCC	3 cut(s)	62, 324, 1474
BmrFI	CCNGG	7 cut(s)	59, 65, 99, 576, 1225, 1310, 1670
BmsI	GCATC	3 cut(s)	906, 1255, 1526
BoxI	GACNNNNGTC	1 cut(s)	834
BpiI	GAAGAC	2 cut(s)	448, 1184
BplI	GAGNNNNNCTC	4 cut(s)	458, 490, 749, 781
BpmI	CTGGAG	3 cut(s)	542, 719, 1033
Bpu10I	CCTNAGC	2 cut(s)	6, 1197
Bpu14I	TTCGAA	1 cut(s)	1785
BpuMI	CCSGG	2 cut(s)	59, 99
Bsa29I	ATCGAT	1 cut(s)	1136
BsaAI	YACGTR	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	1171
BsaJI	CCNNGG	5 cut(s)	575, 996, 1668, 1669, 1741
BsaXI	ACNNNNNCTCC	2 cut(s)	1636, 1666
Bsc4I	CCNNNNNNNGG	6 cut(s)	64, 256, 576, 641, 1056, 1187
Bse118I	RCCGGY	2 cut(s)	208, 682
Bse1I	ACTGG	1 cut(s)	1297
Bse3DI	GCAATG	1 cut(s)	1779
Bse8I	GATNNNNATC	1 cut(s)	106
BseBI	CCWGG	5 cut(s)	65, 576, 1225, 1310, 1670
BseCI	ATCGAT	1 cut(s)	1136
BseDI	CCNNGG	5 cut(s)	575, 996, 1668, 1669, 1741
BseGI	GGATG	5 cut(s)	310, 1246, 1484, 1490, 1819
BseJI	GATNNNNATC	1 cut(s)	106
BseLI	CCNNNNNNNGG	6 cut(s)	64, 256, 576, 641, 1056, 1187
BseMI	GCAATG	1 cut(s)	1779
BseMII	CTCAG	3 cut(s)	198, 421, 1188
BseNI	ACTGG	1 cut(s)	1297
BsePI	GCGCGC	1 cut(s)	1201
BseRI	GAGGAG	5 cut(s)	102, 105, 169, 172, 716
BseSI	GKGCMC	1 cut(s)	33
BseX3I	CGGCCG	1 cut(s)	210
BseXI	GCAGC	3 cut(s)	700, 977, 1736
BseYI	CCCAGC	5 cut(s)	495, 522, 821, 950, 1468
Bsh1236I	CGCG	2 cut(s)	740, 1203
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	4 cut(s)	212, 1128, 1740, 1746
BshVI	ATCGAT	1 cut(s)	1136
BsiEI	CGRYCG	1 cut(s)	213
BsiSI	CCGG	4 cut(s)	58, 99, 209, 683
BslFI	GGGAC	5 cut(s)	62, 369, 466, 608, 1686
BslI	CCNNNNNNNGG	6 cut(s)	64, 256, 576, 641, 1056, 1187
BsmAI	GTCTC	4 cut(s)	560, 822, 1171, 1665
BsmBI	CGTCTC	1 cut(s)	822
BsmFI	GGGAC	5 cut(s)	62, 369, 466, 608, 1686
BsmI	GAATGC	1 cut(s)	1030
BsnI	GGCC	4 cut(s)	212, 1128, 1740, 1746
Bso31I	GGTCTC	1 cut(s)	1171
Bsp119I	TTCGAA	1 cut(s)	1785
Bsp1286I	GDGCHC	2 cut(s)	21, 33
Bsp19I	CCATGG	1 cut(s)	996
BspACI	CCGC	4 cut(s)	68, 755, 834, 1515
BspANI	GGCC	4 cut(s)	212, 1128, 1740, 1746
BspCNI	CTCAG	3 cut(s)	197, 420, 1189
BspDI	ATCGAT	1 cut(s)	1136
BspFNI	CGCG	2 cut(s)	740, 1203
BspHI	TCATGA	1 cut(s)	1543
BspLI	GGNNCC	3 cut(s)	62, 324, 1474
BspMI	ACCTGC	1 cut(s)	1628
BspPI	GGATC	8 cut(s)	109, 152, 317, 330, 673, 1167, 1467, 1480
BspT104I	TTCGAA	1 cut(s)	1785
BspTNI	GGTCTC	1 cut(s)	1171
BsrDI	GCAATG	1 cut(s)	1779
BsrFI	RCCGGY	2 cut(s)	208, 682
BsrI	ACTGG	1 cut(s)	1297
BssAI	RCCGGY	2 cut(s)	208, 682
BssECI	CCNNGG	5 cut(s)	575, 996, 1668, 1669, 1741
BssHII	GCGCGC	1 cut(s)	1201
BssT1I	CCWWGG	2 cut(s)	996, 1741
Bst2UI	CCWGG	5 cut(s)	65, 576, 1225, 1310, 1670
Bst4CI	ACNGT	5 cut(s)	554, 636, 908, 1213, 1589
Bst6I	CTCTTC	3 cut(s)	216, 493, 772
BstAPI	GCANNNNNTGC	2 cut(s)	694, 1834
BstBAI	YACGTR	1 cut(s)	241
BstBI	TTCGAA	1 cut(s)	1785
BstC8I	GCNNGC	5 cut(s)	210, 684, 921, 1203, 1392
BstDEI	CTNAG	7 cut(s)	6, 184, 407, 982, 1197, 1217, 1521
BstDSI	CCRYGG	1 cut(s)	996
BstF5I	GGATG	5 cut(s)	310, 1246, 1484, 1490, 1819
BstFNI	CGCG	2 cut(s)	740, 1203
BstHHI	GCGC	6 cut(s)	203, 688, 740, 1203, 1205, 1527
BstMAI	GTCTC	4 cut(s)	560, 822, 1171, 1665
BstMCI	CGRYCG	1 cut(s)	213
BstNI	CCWGG	5 cut(s)	65, 576, 1225, 1310, 1670
BstNSI	RCATGY	2 cut(s)	1378, 1613
BstPAI	GACNNNNGTC	1 cut(s)	834
BstSCI	CCNGG	7 cut(s)	57, 63, 97, 574, 1223, 1308, 1668
BstSLI	GKGCMC	1 cut(s)	33
BstUI	CGCG	2 cut(s)	740, 1203
BstV1I	GCAGC	3 cut(s)	700, 977, 1736
BstV2I	GAAGAC	2 cut(s)	448, 1184
BstX2I	RGATCY	3 cut(s)	322, 665, 1472
BstXI	CCANNNNNNTGG	1 cut(s)	1688
BstYI	RGATCY	3 cut(s)	322, 665, 1472
BstZI	CGGCCG	1 cut(s)	210
Bsu15I	ATCGAT	1 cut(s)	1136
BsuRI	GGCC	4 cut(s)	212, 1128, 1740, 1746
BsuTUI	ATCGAT	1 cut(s)	1136
BtgI	CCRYGG	1 cut(s)	996
BtgZI	GCGATG	1 cut(s)	726
BtsCI	GGATG	5 cut(s)	310, 1246, 1484, 1490, 1819
BtsI	GCAGTG	1 cut(s)	930
BtsIMutI	CAGTG	3 cut(s)	812, 930, 1032
BveI	ACCTGC	1 cut(s)	1628
Cac8I	GCNNGC	5 cut(s)	210, 684, 921, 1203, 1392
CaiI	CAGNNNCTG	1 cut(s)	697
CciI	TCATGA	1 cut(s)	1543
CfoI	GCGC	6 cut(s)	203, 688, 740, 1203, 1205, 1527
Cfr10I	RCCGGY	2 cut(s)	208, 682
Cfr13I	GGNCC	2 cut(s)	61, 632
ClaI	ATCGAT	1 cut(s)	1136
Csp6I	GTAC	3 cut(s)	646, 843, 895
CspCI	CAANNNNNGTGG	2 cut(s)	68, 103
CviQI	GTAC	3 cut(s)	646, 843, 895
DdeI	CTNAG	7 cut(s)	6, 184, 407, 982, 1197, 1217, 1521
DraI	TTTAAA	1 cut(s)	678
DrdI	GACNNNNNNGTC	1 cut(s)	446
DseDI	GACNNNNNNGTC	1 cut(s)	446
EaeI	YGGCCR	2 cut(s)	210, 1126
EagI	CGGCCG	1 cut(s)	210
Eam1104I	CTCTTC	3 cut(s)	216, 493, 772
EarI	CTCTTC	3 cut(s)	216, 493, 772
EciI	GGCGGA	1 cut(s)	770
EclXI	CGGCCG	1 cut(s)	210
Eco130I	CCWWGG	2 cut(s)	996, 1741
Eco24I	GRGCYC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	1171
Eco47I	GGWCC	2 cut(s)	61, 632
Eco52I	CGGCCG	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	680
Eco72I	CACGTG	1 cut(s)	241
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRII	CCWGG	5 cut(s)	63, 574, 1223, 1308, 1668
EcoT14I	CCWWGG	2 cut(s)	996, 1741
EcoT22I	ATGCAT	1 cut(s)	1611
EcoT38I	GRGCYC	1 cut(s)	21
ErhI	CCWWGG	2 cut(s)	996, 1741
Esp3I	CGTCTC	1 cut(s)	822
FalI	AAGNNNNNCTT	2 cut(s)	1567, 1599
FaqI	GGGAC	5 cut(s)	62, 369, 466, 608, 1686
FauI	CCCGC	1 cut(s)	61
FauNDI	CATATG	1 cut(s)	1605
FbaI	TGATCA	4 cut(s)	243, 1036, 1444, 1546
Fnu4HI	GCNGC	3 cut(s)	689, 966, 1725
FokI	GGATG	5 cut(s)	297, 1233, 1471, 1477, 1826
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	3 cut(s)	689, 966, 1725
FspBI	CTAG	2 cut(s)	669, 1002
GlaI	GCGC	6 cut(s)	202, 687, 739, 1202, 1204, 1526
GluI	GCNGC	3 cut(s)	689, 966, 1725
GsaI	CCCAGC	5 cut(s)	499, 526, 825, 954, 1472
GsuI	CTGGAG	3 cut(s)	542, 719, 1033
HaeIII	GGCC	4 cut(s)	212, 1128, 1740, 1746
HapII	CCGG	4 cut(s)	58, 99, 209, 683
HhaI	GCGC	6 cut(s)	203, 688, 740, 1203, 1205, 1527
Hin6I	GCGC	6 cut(s)	201, 686, 738, 1201, 1203, 1525
HinP1I	GCGC	6 cut(s)	201, 686, 738, 1201, 1203, 1525
HincII	GTYRAC	1 cut(s)	911
HindII	GTYRAC	1 cut(s)	911
HindIII	AAGCTT	1 cut(s)	1401
HinfI	GANTC	7 cut(s)	590, 655, 761, 809, 1138, 1262, 1480
HpaII	CCGG	4 cut(s)	58, 99, 209, 683
HphI	GGTGA	4 cut(s)	96, 812, 1154, 1670
Hpy166II	GTNNAC	3 cut(s)	400, 639, 911
Hpy188I	TCNGA	8 cut(s)	187, 410, 660, 840, 1059, 1150, 1267, 1477
Hpy8I	GTNNAC	3 cut(s)	400, 639, 911
Hpy99I	CGWCG	3 cut(s)	455, 809, 881
HpyAV	CCTTC	5 cut(s)	39, 181, 655, 1464, 1803
HpyCH4III	ACNGT	5 cut(s)	554, 636, 908, 1213, 1589
HpyCH4IV	ACGT	3 cut(s)	240, 396, 1732
HpyCH4V	TGCA	9 cut(s)	919, 965, 977, 1246, 1334, 1609, 1724, 1772, 1837
HpyF3I	CTNAG	7 cut(s)	6, 184, 407, 982, 1197, 1217, 1521
HpySE526I	ACGT	3 cut(s)	240, 396, 1732
HspAI	GCGC	6 cut(s)	201, 686, 738, 1201, 1203, 1525
KroI	GCCGGC	2 cut(s)	208, 682
KroNI	GCCGGC	2 cut(s)	210, 684
Ksp22I	TGATCA	4 cut(s)	243, 1036, 1444, 1546
LmnI	GCTCC	4 cut(s)	60, 147, 973, 1711
Lsp1109I	GCAGC	3 cut(s)	700, 977, 1736
LweI	GCATC	3 cut(s)	906, 1255, 1526
MaeI	CTAG	2 cut(s)	669, 1002
MaeII	ACGT	3 cut(s)	240, 396, 1732
MaeIII	GTNAC	2 cut(s)	800, 1207
MboII	GAAGA	9 cut(s)	233, 276, 448, 480, 483, 759, 1033, 1184, 1376
MflI	RGATCY	3 cut(s)	322, 665, 1472
MhlI	GDGCHC	2 cut(s)	21, 33
MlsI	TGGCCA	1 cut(s)	1128
MluCI	AATT	9 cut(s)	271, 329, 583, 598, 729, 864, 1271, 1318, 1591
MluNI	TGGCCA	1 cut(s)	1128
MlyI	GAGTC	2 cut(s)	803, 1256
MmeI	TCCRAC	1 cut(s)	118
Mox20I	TGGCCA	1 cut(s)	1128
Mph1103I	ATGCAT	1 cut(s)	1611
MroNI	GCCGGC	2 cut(s)	208, 682
MscI	TGGCCA	1 cut(s)	1128
MseI	TTAA	6 cut(s)	582, 677, 1011, 1274, 1329, 1421
MslI	CAYNNNNRTG	1 cut(s)	1608
Msp20I	TGGCCA	1 cut(s)	1128
MspA1I	CMGCKG	1 cut(s)	1727
MspI	CCGG	4 cut(s)	58, 99, 209, 683
MspR9I	CCNGG	7 cut(s)	59, 65, 99, 576, 1225, 1310, 1670
Mva1269I	GAATGC	1 cut(s)	1030
MvaI	CCWGG	5 cut(s)	65, 576, 1225, 1310, 1670
MvnI	CGCG	2 cut(s)	740, 1203
NaeI	GCCGGC	2 cut(s)	210, 684
NciI	CCSGG	2 cut(s)	59, 99
NcoI	CCATGG	1 cut(s)	996
NdeI	CATATG	1 cut(s)	1605
NgoMIV	GCCGGC	2 cut(s)	208, 682
NlaIV	GGNNCC	3 cut(s)	62, 324, 1474
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	800
NsiI	ATGCAT	1 cut(s)	1611
NspI	RCATGY	2 cut(s)	1378, 1613
NspV	TTCGAA	1 cut(s)	1785
PagI	TCATGA	1 cut(s)	1543
PaqCI	CACCTGC	1 cut(s)	1628
PasI	CCCWGGG	1 cut(s)	1669
PauI	GCGCGC	1 cut(s)	1201
PcsI	WCGNNNNNNNCGW	2 cut(s)	447, 1758
PctI	GAATGC	1 cut(s)	1030
PdiI	GCCGGC	2 cut(s)	210, 684
PfeI	GAWTC	5 cut(s)	590, 655, 761, 1138, 1480
PflMI	CCANNNNNTGG	1 cut(s)	256
PkrI	GCNGC	3 cut(s)	690, 967, 1726
PleI	GAGTC	2 cut(s)	803, 1256
PmaCI	CACGTG	1 cut(s)	241
PmlI	CACGTG	1 cut(s)	241
PpsI	GAGTC	2 cut(s)	803, 1256
Ppu21I	YACGTR	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	61
PshAI	GACNNNNGTC	1 cut(s)	834
PshBI	ATTAAT	3 cut(s)	582, 1274, 1329
Psp1406I	AACGTT	1 cut(s)	1732
Psp5II	RGGWCCY	1 cut(s)	61
Psp6I	CCWGG	5 cut(s)	63, 574, 1223, 1308, 1668
PspCI	CACGTG	1 cut(s)	241
PspFI	CCCAGC	5 cut(s)	495, 522, 821, 950, 1468
PspGI	CCWGG	5 cut(s)	63, 574, 1223, 1308, 1668
PspN4I	GGNNCC	3 cut(s)	62, 324, 1474
PspPI	GGNCC	2 cut(s)	61, 632
PspPPI	RGGWCCY	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	697
PsuI	RGATCY	3 cut(s)	322, 665, 1472
PteI	GCGCGC	1 cut(s)	1201
PvuII	CAGCTG	1 cut(s)	1727
RsaI	GTAC	3 cut(s)	647, 844, 896
RsaNI	GTAC	3 cut(s)	646, 843, 895
RseI	CAYNNNNRTG	1 cut(s)	1608
SaqAI	TTAA	6 cut(s)	582, 677, 1011, 1274, 1329, 1421
SatI	GCNGC	3 cut(s)	689, 966, 1725
Sau96I	GGNCC	2 cut(s)	61, 632
SchI	GAGTC	2 cut(s)	803, 1256
ScrFI	CCNGG	7 cut(s)	59, 65, 99, 576, 1225, 1310, 1670
SduI	GDGCHC	2 cut(s)	21, 33
SfaNI	GCATC	3 cut(s)	906, 1255, 1526
SfuI	TTCGAA	1 cut(s)	1785
SinI	GGWCC	2 cut(s)	61, 632
SmiMI	CAYNNNNRTG	1 cut(s)	1608
Sse9I	AATT	9 cut(s)	271, 329, 583, 598, 729, 864, 1271, 1318, 1591
SsiI	CCGC	4 cut(s)	68, 755, 834, 1515
SspMI	CTAG	2 cut(s)	669, 1002
StyD4I	CCNGG	7 cut(s)	57, 63, 97, 574, 1223, 1308, 1668
StyI	CCWWGG	2 cut(s)	996, 1741
TaaI	ACNGT	5 cut(s)	554, 636, 908, 1213, 1589
TaiI	ACGT	3 cut(s)	243, 399, 1735
TaqI	TCGA	6 cut(s)	15, 417, 653, 876, 1136, 1785
TasI	AATT	9 cut(s)	271, 329, 583, 598, 729, 864, 1271, 1318, 1591
TatI	WGTACW	1 cut(s)	842
TfiI	GAWTC	5 cut(s)	590, 655, 761, 1138, 1480
Tru1I	TTAA	6 cut(s)	582, 677, 1011, 1274, 1329, 1421
Tru9I	TTAA	6 cut(s)	582, 677, 1011, 1274, 1329, 1421
TscAI	CASTG	3 cut(s)	819, 930, 1039
TseFI	GTSAC	1 cut(s)	800
TseI	GCWGC	3 cut(s)	688, 965, 1724
Tsp45I	GTSAC	1 cut(s)	800
TspDTI	ATGAA	7 cut(s)	163, 1094, 1095, 1104, 1130, 1532, 1643
TspRI	CASTG	3 cut(s)	819, 930, 1039
Van91I	CCANNNNNTGG	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	61, 632
VspI	ATTAAT	3 cut(s)	582, 1274, 1329
XapI	RAATTY	2 cut(s)	598, 729
XceI	RCATGY	2 cut(s)	1378, 1613
XspI	CTAG	2 cut(s)	669, 1002
Zsp2I	ATGCAT	1 cut(s)	1611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.