Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0021280

Physical Location & Seq

Genomic Coordinates Reverse (-)

17594367 .. 17595329

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15260.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCGGACGATGATCTTTACACGAACGATGGGACTCTGGACATCCATAAAAAACCTGCCAACAAGAAGGAGACCGGAAATTGGAAGGCATGCCGCTTTATTCTCGGAAATGAGTGCTGCGAAAGATTGGCATACTATGGAATGAGTACCAATCTAGTGAACTATCTCGAGAAACGTCTCGGCATGGGAAATGTCACGGCAGCAACGAGCGTCTCTAATTGGTCAGGGACGTGCTACGCGACACCATTGATAGGAGCCTTCCTAGCTGATGCATACTTGGGAAGATATTGGACAATTGCCATCTTTTCAATCGTTTATGTTCTTGGTATGACACTCTTGACCCTCACTGCATCTATCAACGGATTAAAACCACATTGCGATAGCTCTGGTTGCAACACAACATCGTCCCAAAGAGCGGCCTGCTTTGTAGCTCTGTACTTGATTGCAGTAGGTACTGGTGGAATCAAGCCATGCGTTTCATCCTTCGGCGCAGATCAATTTGATGAAACTGACGAGACTGAGAGGAAAAAGAAGAGCTCCTTCTTCAACTGGTTTTACATGTCAATCAATGTCGGTGCGCTTATTGCTTCCACAGTATTGGTCTGGATGCAAATGAATGTGGGATGGAATTGGGGGTTCGGAGTCCCAGCTGTCGCAATGGGGATTGCAGTTGTGCGGGAGTCCCCTCACAAGGATTGCTCAGGTGGTTGCTGCATCCATCAGGAAATGCAAAGTGAAAGTTCCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015833 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022857 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035672 GO:0035673 GO:0040007 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055044 GO:0055085 GO:0060560 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

250

Amino Acids

27.13

Weight (kDa)

6.07

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021280)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g15260
rosa_multiflora	Rmu_co8123010.1_g000001 Rmu_sc0003267.1_g000045
rosa_samantha	Rh3CG131700 Rh3DG130000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	64
AccBSI	CCGCTC	1 cut(s)	416
AccII	CGCG	1 cut(s)	239
AciI	CCGC	4 cut(s)	5, 94, 416, 676
AfaI	GTAC	3 cut(s)	148, 437, 454
AfiI	CCNNNNNNNGG	4 cut(s)	81, 251, 415, 691
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	2 cut(s)	309, 547
AjiI	CACGTC	1 cut(s)	231
AluBI	AGCT	5 cut(s)	266, 384, 431, 537, 650
AluI	AGCT	5 cut(s)	266, 384, 431, 537, 650
Alw21I	GWGCWC	1 cut(s)	539
Alw26I	GTCTC	4 cut(s)	65, 182, 217, 509
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	3 cut(s)	117, 200, 711
AspLEI	GCGC	2 cut(s)	491, 580
AvaI	CYCGRG	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	539
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	3 cut(s)	104, 212, 698
BccI	CCATC	4 cut(s)	23, 308, 618, 726
BceAI	ACGGC	1 cut(s)	213
BcoDI	GTCTC	4 cut(s)	65, 182, 217, 509
BfaI	CTAG	2 cut(s)	155, 263
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	5 cut(s)	94, 118, 201, 417, 712
BlsI	GCNGC	5 cut(s)	95, 119, 202, 418, 713
BmeT110I	CYCGRG	1 cut(s)	167
BmgBI	CACGTC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	256
BmsI	GCATC	4 cut(s)	259, 359, 597, 723
Bpu10I	CCTNAGC	1 cut(s)	700
BsaI	GGTCTC	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 251, 415, 691
Bse1I	ACTGG	2 cut(s)	460, 554
Bse3DI	GCAATG	2 cut(s)	373, 663
BseGI	GGATG	5 cut(s)	42, 479, 612, 629, 714
BseLI	CCNNNNNNNGG	4 cut(s)	81, 251, 415, 691
BseMI	GCAATG	2 cut(s)	373, 663
BseMII	CTCAG	2 cut(s)	510, 714
BseNI	ACTGG	2 cut(s)	460, 554
BseXI	GCAGC	3 cut(s)	104, 212, 698
BseYI	CCCAGC	1 cut(s)	646
Bsh1236I	CGCG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	539
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	5 cut(s)	46, 241, 391, 629, 667
BslI	CCNNNNNNNGG	4 cut(s)	81, 251, 415, 691
BsmAI	GTCTC	4 cut(s)	65, 182, 217, 509
BsmBI	CGTCTC	2 cut(s)	182, 217
BsmFI	GGGAC	5 cut(s)	46, 241, 391, 629, 667
BsnI	GGCC	1 cut(s)	419
Bso31I	GGTCTC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	2 cut(s)	13, 493
BspACI	CCGC	4 cut(s)	5, 94, 416, 676
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	2 cut(s)	511, 713
BspFNI	CGCG	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	64
BspQI	GCTCTTC	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	416
BsrDI	GCAATG	2 cut(s)	373, 663
BsrI	ACTGG	2 cut(s)	460, 554
BssMI	GATC	2 cut(s)	13, 493
Bst4CI	ACNGT	1 cut(s)	595
Bst6I	CTCTTC	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	91, 421
BstDEI	CTNAG	2 cut(s)	519, 700
BstF5I	GGATG	5 cut(s)	42, 479, 612, 629, 714
BstFNI	CGCG	1 cut(s)	239
BstHHI	GCGC	2 cut(s)	491, 580
BstKTI	GATC	2 cut(s)	16, 496
BstMAI	GTCTC	4 cut(s)	65, 182, 217, 509
BstMBI	GATC	2 cut(s)	13, 493
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 390, 584
BstNSI	RCATGY	2 cut(s)	93, 562
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	3 cut(s)	104, 212, 698
BstXI	CCANNNNNNTGG	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	419
BtrI	CACGTC	1 cut(s)	231
BtsCI	GGATG	5 cut(s)	42, 479, 612, 629, 714
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	91, 421
CfoI	GCGC	2 cut(s)	491, 580
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	3 cut(s)	147, 436, 453
CviAII	CATG	4 cut(s)	90, 184, 471, 559
CviJI	RGCY	8 cut(s)	257, 266, 384, 419, 431, 469, 537, 650
CviKI_1	RGCY	8 cut(s)	257, 266, 384, 419, 431, 469, 537, 650
CviQI	GTAC	3 cut(s)	147, 436, 453
DdeI	CTNAG	2 cut(s)	519, 700
DpnI	GATC	2 cut(s)	15, 495
DpnII	GATC	2 cut(s)	13, 493
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	539
Eco31I	GGTCTC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	537
Eco88I	CYCGRG	1 cut(s)	167
EcoICRI	GAGCTC	1 cut(s)	537
EcoT22I	ATGCAT	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	539
Esp3I	CGTCTC	2 cut(s)	182, 217
FaeI	CATG	4 cut(s)	93, 187, 474, 562
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FaqI	GGGAC	5 cut(s)	46, 241, 391, 629, 667
FatI	CATG	4 cut(s)	89, 183, 470, 558
FauI	CCCGC	1 cut(s)	669
Fnu4HI	GCNGC	5 cut(s)	94, 118, 201, 417, 712
FokI	GGATG	5 cut(s)	29, 466, 619, 636, 701
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	5 cut(s)	94, 118, 201, 417, 712
FspBI	CTAG	2 cut(s)	155, 263
GlaI	GCGC	2 cut(s)	490, 579
GluI	GCNGC	5 cut(s)	94, 118, 201, 417, 712
GsaI	CCCAGC	1 cut(s)	650
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	2 cut(s)	491, 580
Hin1II	CATG	4 cut(s)	93, 187, 474, 562
Hin6I	GCGC	2 cut(s)	489, 578
HinP1I	GCGC	2 cut(s)	489, 578
HinfI	GANTC	4 cut(s)	34, 462, 642, 680
HpaII	CCGG	1 cut(s)	75
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	107, 641
Hpy188III	TCNNGA	6 cut(s)	38, 167, 169, 337, 604, 722
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	5 cut(s)	61, 79, 268, 493, 550
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4IV	ACGT	2 cut(s)	175, 230
HpyCH4V	TGCA	8 cut(s)	272, 350, 393, 446, 610, 668, 714, 730
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 390, 584
HpyF3I	CTNAG	2 cut(s)	519, 700
HpySE526I	ACGT	2 cut(s)	175, 230
Hsp92II	CATG	4 cut(s)	93, 187, 474, 562
HspAI	GCGC	2 cut(s)	489, 578
Kzo9I	GATC	2 cut(s)	13, 493
LguI	GCTCTTC	1 cut(s)	527
LmnI	GCTCC	2 cut(s)	254, 542
Lsp1109I	GCAGC	3 cut(s)	104, 212, 698
LweI	GCATC	4 cut(s)	259, 359, 597, 723
MaeI	CTAG	2 cut(s)	155, 263
MaeII	ACGT	2 cut(s)	175, 230
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	2 cut(s)	15, 495
MbiI	CCGCTC	1 cut(s)	416
MboI	GATC	2 cut(s)	13, 493
MboII	GAAGA	3 cut(s)	294, 535, 544
MfeI	CAATTG	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	5 cut(s)	79, 217, 294, 497, 628
MlyI	GAGTC	3 cut(s)	28, 651, 689
MnlI	CCTC	3 cut(s)	353, 516, 696
Mph1103I	ATGCAT	1 cut(s)	274
MseI	TTAA	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	1 cut(s)	75
MunI	CAATTG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	3 cut(s)	263, 390, 584
NdeII	GATC	2 cut(s)	13, 493
NlaIII	CATG	4 cut(s)	93, 187, 474, 562
NlaIV	GGNNCC	1 cut(s)	256
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	193
NsiI	ATGCAT	1 cut(s)	274
NspI	RCATGY	2 cut(s)	93, 562
PaeI	GCATGC	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	167
PciI	ACATGT	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	2 cut(s)	203, 236
PfeI	GAWTC	1 cut(s)	462
PkrI	GCNGC	5 cut(s)	95, 119, 202, 418, 713
PleI	GAGTC	3 cut(s)	28, 650, 688
PpsI	GAGTC	3 cut(s)	28, 650, 688
PscI	ACATGT	1 cut(s)	558
Psp124BI	GAGCTC	1 cut(s)	539
PspFI	CCCAGC	1 cut(s)	646
PspN4I	GGNNCC	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	3 cut(s)	148, 437, 454
RsaNI	GTAC	3 cut(s)	147, 436, 453
SacI	GAGCTC	1 cut(s)	539
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	5 cut(s)	94, 118, 201, 417, 712
Sau3AI	GATC	2 cut(s)	13, 493
SchI	GAGTC	3 cut(s)	28, 651, 689
SduI	GDGCHC	1 cut(s)	539
SfaNI	GCATC	4 cut(s)	259, 359, 597, 723
Sfr274I	CTCGAG	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
SphI	GCATGC	1 cut(s)	93
Sse9I	AATT	5 cut(s)	79, 217, 294, 497, 628
SsiI	CCGC	4 cut(s)	5, 94, 416, 676
SspMI	CTAG	2 cut(s)	155, 263
SstI	GAGCTC	1 cut(s)	539
TaaI	ACNGT	1 cut(s)	595
TaiI	ACGT	2 cut(s)	178, 233
TaqI	TCGA	1 cut(s)	168
TasI	AATT	5 cut(s)	79, 217, 294, 497, 628
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	2 cut(s)	96, 419
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	3 cut(s)	117, 200, 711
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	3 cut(s)	468, 519, 629
TspGWI	ACGGA	1 cut(s)	375
TspRI	CASTG	1 cut(s)	352
XceI	RCATGY	2 cut(s)	93, 562
XhoI	CTCGAG	1 cut(s)	167
XspI	CTAG	2 cut(s)	155, 263
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.