Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0021280

Physical Location & Seq

Genomic Coordinates Forward (+)

10791263 .. 10795405

Gene Structure 4143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG131700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCTTTGGCGGAAGATGAATATACAAATGATGGCACTGTGGACATACATAAAAACCCTGCTAATAAGCGGAAGACTGGCAATTGGAAGGCATGCCGCTTTATTCTTGGAAATGAATGCTGTGAAAGATTGGCATACTATGGAATGAGTACCAATCTGGTGAACTATCTTCAGAAACAACTCAGCATGGGAAATGCCGCGGCATCAAAGAGTGTCACTAATTGGTCGGGAACTTGCTATGCCACACCACTGTTAGGAGCCTTCCTAGCTGATGCATACTTGGGAAGATATTGGACGATTGCCATTTTCTCAATTATATATGCTCTTGGGATGGCATTCTTGTCTCTGACAGCATCTATCAATGGACTAAAGCCATCATGCGACAGCTCTGGTTGCCACGCAACTACATCACAAAAAGCAGTCTGCTTTGTAGCTCTGTACATGATTGCACTTGGTACTGGTGGAATCAAGCCGTGCGTTTCATCTTTCGGTGCTGATCAATTTGATGAAACAGACGATACTGAGAAGGAAAAGAAGAGCTCTTTCTTCAATTGGTTTTACATGTCAATCAATGTTGGTGCACTTATTGCTTCCTCGGTTTTGGTCTATATACAAATGAATGTGGGATGGAACTGGGGTTTTGGGATCCCAGCAGTTGCAATGGTCATAGCAGTTGTGTTCTTTTTCTTTGGTAGTCCATTGTACCGACTTCAGAAACCTGGAGGGAGTCCCCTCACAAGGATTATTCAGGTCATTGTTGCATCCTGCAGGAAATTCAATGTCAAAGTCCCGGATGACAAGTCTCTTCTTTATGAAACAAGAGATGCTGAGAGTAATATCCAAGGAAGCCGCAAGCTTGAGCACACAGACAAGTTAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015833 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022857 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035672 GO:0035673 GO:0040007 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055044 GO:0055085 GO:0060560 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

293

Amino Acids

32.23

Weight (kDa)

8.64

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	44 - 240	3.1e-09	Major Facilitator Superfamily
PTR2	PF00854	97 - 288	1.8e-61	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021280)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g15260
rosa_multiflora	Rmu_co8123010.1_g000001 Rmu_sc0003267.1_g000045
rosa_samantha	Rh3CG131700 Rh3DG130000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	200
AciI	CCGC	6 cut(s)	11, 70, 97, 198, 200, 850
AclWI	GGATC	2 cut(s)	640, 653
AcsI	RAATTY	1 cut(s)	773
AcuI	CTGAAG	2 cut(s)	155, 695
AfaI	GTAC	4 cut(s)	151, 440, 457, 704
AfiI	CCNNNNNNNGG	2 cut(s)	254, 738
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	2 cut(s)	550, 778
AjnI	CCWGG	1 cut(s)	718
AluBI	AGCT	5 cut(s)	269, 387, 434, 540, 856
AluI	AGCT	5 cut(s)	269, 387, 434, 540, 856
Alw21I	GWGCWC	3 cut(s)	542, 583, 864
Alw26I	GTCTC	2 cut(s)	348, 807
Alw44I	GTGCAC	1 cut(s)	579
AlwI	GGATC	2 cut(s)	640, 653
ApaLI	GTGCAC	1 cut(s)	579
ApoI	RAATTY	1 cut(s)	773
AsuC2I	CCSGG	1 cut(s)	791
AsuHPI	GGTGA	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	583
BamHI	GGATCC	1 cut(s)	645
BanII	GRGCYC	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	3 cut(s)	542, 583, 864
BccI	CCATC	4 cut(s)	26, 325, 382, 621
BceAI	ACGGC	1 cut(s)	457
BciT130I	CCWGG	1 cut(s)	720
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	791
BcoDI	GTCTC	2 cut(s)	348, 807
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	766
BisI	GCNGC	4 cut(s)	97, 198, 201, 850
BlsI	GCNGC	4 cut(s)	98, 199, 202, 851
Bme1390I	CCNGG	2 cut(s)	720, 791
BmiI	GGNNCC	2 cut(s)	259, 647
BmrFI	CCNGG	2 cut(s)	720, 791
BmrI	ACTGGG	1 cut(s)	643
BmsI	GCATC	5 cut(s)	212, 262, 362, 770, 814
BmuI	ACTGGG	1 cut(s)	643
BpiI	GAAGAC	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	741
BpuEI	CTTGAG	1 cut(s)	878
BpuMI	CCSGG	1 cut(s)	791
BsaJI	CCNNGG	3 cut(s)	198, 594, 841
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 738
Bse1I	ACTGG	3 cut(s)	82, 463, 638
Bse3DI	GCAATG	1 cut(s)	666
BseBI	CCWGG	1 cut(s)	720
BseDI	CCNNGG	3 cut(s)	198, 594, 841
BseGI	GGATG	4 cut(s)	336, 632, 761, 799
BseLI	CCNNNNNNNGG	2 cut(s)	254, 738
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	3 cut(s)	196, 513, 819
BseNI	ACTGG	3 cut(s)	82, 463, 638
BseSI	GKGCMC	1 cut(s)	583
BseYI	CCCAGC	1 cut(s)	649
Bsh1236I	CGCG	1 cut(s)	200
BsiHKAI	GWGCWC	3 cut(s)	542, 583, 864
BsiSI	CCGG	1 cut(s)	791
BslFI	GGGAC	2 cut(s)	714, 773
BslI	CCNNNNNNNGG	2 cut(s)	254, 738
BsmAI	GTCTC	2 cut(s)	348, 807
BsmFI	GGGAC	2 cut(s)	714, 773
BsmI	GAATGC	2 cut(s)	122, 335
Bsp1286I	GDGCHC	3 cut(s)	542, 583, 864
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	2 cut(s)	496, 645
BspACI	CCGC	6 cut(s)	11, 70, 97, 198, 200, 850
BspCNI	CTCAG	3 cut(s)	195, 514, 820
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	2 cut(s)	259, 647
BspMAI	CTGCAG	1 cut(s)	770
BspPI	GGATC	2 cut(s)	640, 653
BspQI	GCTCTTC	1 cut(s)	530
BsrDI	GCAATG	1 cut(s)	666
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	3 cut(s)	82, 463, 638
BssECI	CCNNGG	3 cut(s)	198, 594, 841
BssMI	GATC	2 cut(s)	496, 645
BssT1I	CCWWGG	1 cut(s)	841
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	2 cut(s)	40, 252
Bst6I	CTCTTC	2 cut(s)	530, 810
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstAUI	TGTACA	1 cut(s)	438
BstC8I	GCNNGC	2 cut(s)	94, 854
BstDEI	CTNAG	3 cut(s)	182, 522, 828
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	4 cut(s)	336, 632, 761, 799
BstFNI	CGCG	1 cut(s)	200
BstKTI	GATC	2 cut(s)	499, 648
BstMAI	GTCTC	2 cut(s)	348, 807
BstMBI	GATC	2 cut(s)	496, 645
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 393, 587
BstNI	CCWGG	1 cut(s)	720
BstNSI	RCATGY	2 cut(s)	96, 565
BstSCI	CCNGG	2 cut(s)	718, 789
BstSFI	CTRYAG	1 cut(s)	766
BstSLI	GKGCMC	1 cut(s)	583
BstUI	CGCG	1 cut(s)	200
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	645
BstYI	RGATCY	1 cut(s)	645
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	4 cut(s)	336, 632, 761, 799
BtsIMutI	CAGTG	2 cut(s)	36, 248
Cac8I	GCNNGC	2 cut(s)	94, 854
Cfr42I	CCGCGG	1 cut(s)	201
Csp6I	GTAC	4 cut(s)	150, 439, 456, 703
CviAII	CATG	5 cut(s)	93, 187, 378, 442, 562
CviQI	GTAC	4 cut(s)	150, 439, 456, 703
DdeI	CTNAG	3 cut(s)	182, 522, 828
DpnI	GATC	2 cut(s)	498, 647
DpnII	GATC	2 cut(s)	496, 645
Eam1104I	CTCTTC	2 cut(s)	530, 810
EarI	CTCTTC	2 cut(s)	530, 810
EciI	GGCGGA	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	841
Eco24I	GRGCYC	1 cut(s)	542
Eco53kI	GAGCTC	1 cut(s)	540
Eco57I	CTGAAG	2 cut(s)	155, 695
EcoICRI	GAGCTC	1 cut(s)	540
EcoRII	CCWGG	1 cut(s)	718
EcoT14I	CCWWGG	1 cut(s)	841
EcoT22I	ATGCAT	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	542
ErhI	CCWWGG	1 cut(s)	841
FaeI	CATG	5 cut(s)	96, 190, 381, 445, 565
FaqI	GGGAC	2 cut(s)	714, 773
FatI	CATG	5 cut(s)	92, 186, 377, 441, 561
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	4 cut(s)	97, 198, 201, 850
FokI	GGATG	4 cut(s)	343, 639, 748, 806
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	4 cut(s)	97, 198, 201, 850
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	4 cut(s)	97, 198, 201, 850
GsaI	CCCAGC	1 cut(s)	653
GsuI	CTGGAG	1 cut(s)	741
HapII	CCGG	1 cut(s)	791
Hin1II	CATG	5 cut(s)	96, 190, 381, 445, 565
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	2 cut(s)	465, 727
HpaII	CCGG	1 cut(s)	791
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	3 cut(s)	43, 163, 581
Hpy188I	TCNGA	3 cut(s)	174, 348, 714
Hpy188III	TCNNGA	1 cut(s)	228
Hpy8I	GTNNAC	3 cut(s)	43, 163, 581
HpyAV	CCTTC	3 cut(s)	82, 271, 520
HpyCH4III	ACNGT	2 cut(s)	40, 252
HpyCH4V	TGCA	6 cut(s)	275, 449, 581, 659, 761, 768
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 393, 587
HpyF3I	CTNAG	3 cut(s)	182, 522, 828
Hsp92II	CATG	5 cut(s)	96, 190, 381, 445, 565
Ksp22I	TGATCA	1 cut(s)	496
KspI	CCGCGG	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	496, 645
LguI	GCTCTTC	1 cut(s)	530
LmnI	GCTCC	1 cut(s)	257
LweI	GCATC	5 cut(s)	212, 262, 362, 770, 814
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	2 cut(s)	498, 647
MboI	GATC	2 cut(s)	496, 645
MboII	GAAGA	7 cut(s)	26, 85, 161, 297, 538, 547, 797
MfeI	CAATTG	2 cut(s)	82, 550
MflI	RGATCY	1 cut(s)	645
MhlI	GDGCHC	3 cut(s)	542, 583, 864
MluCI	AATT	6 cut(s)	82, 220, 312, 500, 550, 773
MlyI	GAGTC	1 cut(s)	736
MnlI	CCTC	3 cut(s)	604, 716, 743
Mph1103I	ATGCAT	1 cut(s)	277
MseI	TTAA	1 cut(s)	875
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	791
MspR9I	CCNGG	2 cut(s)	720, 791
MunI	CAATTG	2 cut(s)	82, 550
Mva1269I	GAATGC	2 cut(s)	122, 335
MvaI	CCWGG	1 cut(s)	720
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	266, 393, 587
NciI	CCSGG	1 cut(s)	791
NdeII	GATC	2 cut(s)	496, 645
NlaIII	CATG	5 cut(s)	96, 190, 381, 445, 565
NlaIV	GGNNCC	2 cut(s)	259, 647
NmuCI	GTSAC	1 cut(s)	214
NsiI	ATGCAT	1 cut(s)	277
NspI	RCATGY	2 cut(s)	96, 565
PaeI	GCATGC	1 cut(s)	96
PciI	ACATGT	1 cut(s)	561
PciSI	GCTCTTC	1 cut(s)	530
PctI	GAATGC	2 cut(s)	122, 335
PfeI	GAWTC	1 cut(s)	465
PfoI	TCCNGGA	1 cut(s)	789
PkrI	GCNGC	4 cut(s)	98, 199, 202, 851
PleI	GAGTC	1 cut(s)	735
PpsI	GAGTC	1 cut(s)	735
PscI	ACATGT	1 cut(s)	561
Psp124BI	GAGCTC	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	718
PspFI	CCCAGC	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	718
PspN4I	GGNNCC	2 cut(s)	259, 647
PstI	CTGCAG	1 cut(s)	770
PsuI	RGATCY	1 cut(s)	645
RsaI	GTAC	4 cut(s)	151, 440, 457, 704
RsaNI	GTAC	4 cut(s)	150, 439, 456, 703
SacI	GAGCTC	1 cut(s)	542
SacII	CCGCGG	1 cut(s)	201
SapI	GCTCTTC	1 cut(s)	530
SaqAI	TTAA	1 cut(s)	875
SatI	GCNGC	4 cut(s)	97, 198, 201, 850
Sau3AI	GATC	2 cut(s)	496, 645
SbfI	CCTGCAGG	1 cut(s)	770
SchI	GAGTC	1 cut(s)	736
ScrFI	CCNGG	2 cut(s)	720, 791
SdaI	CCTGCAGG	1 cut(s)	770
SduI	GDGCHC	3 cut(s)	542, 583, 864
SetI	ASST	8 cut(s)	271, 389, 436, 542, 721, 753, 858, 881
SfaNI	GCATC	5 cut(s)	212, 262, 362, 770, 814
SfcI	CTRYAG	1 cut(s)	766
Sfr303I	CCGCGG	1 cut(s)	201
SgrBI	CCGCGG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SphI	GCATGC	1 cut(s)	96
Sse8387I	CCTGCAGG	1 cut(s)	770
Sse9I	AATT	6 cut(s)	82, 220, 312, 500, 550, 773
SsiI	CCGC	6 cut(s)	11, 70, 97, 198, 200, 850
SspMI	CTAG	1 cut(s)	266
SstI	GAGCTC	1 cut(s)	542
StyD4I	CCNGG	2 cut(s)	718, 789
StyI	CCWWGG	1 cut(s)	841
TaaI	ACNGT	2 cut(s)	40, 252
TasI	AATT	6 cut(s)	82, 220, 312, 500, 550, 773
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	4 cut(s)	99, 200, 203, 852
TfiI	GAWTC	1 cut(s)	465
Tru1I	TTAA	1 cut(s)	875
Tru9I	TTAA	1 cut(s)	875
TscAI	CASTG	2 cut(s)	43, 255
TseFI	GTSAC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	6 cut(s)	33, 129, 471, 522, 632, 828
TspRI	CASTG	2 cut(s)	43, 255
VneI	GTGCAC	1 cut(s)	579
XapI	RAATTY	1 cut(s)	773
XceI	RCATGY	2 cut(s)	96, 565
XspI	CTAG	1 cut(s)	266
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.