Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003267.1

Orthogroup ID

OG0021280

Physical Location & Seq

Genomic Coordinates Forward (+)

213392 .. 214510

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003267.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atggcagaagacgatgcctatacgaaagatgggacaacggattattgtaaccagcctgccatgaagaacaaaacaggaacatggaaagcttgtccttacattctaggaaatgaatgctgtgaaagattggcttactatggtattaacaccaatcttgttaattacctcaagttccaaatgaaccagaggaatgttgaggctgttaataatgtcacaaattggtcaggcacatgctatgtgacaccattacttggagcatttctagctgatgcataccttggaagatattacacaatcgctgccttctctatcatctatgtttttggaatgacactattgacattatcagcatcagttgaagggctaaaaccactatgtgacaaaaacaatgtgtgcaatccaacacagatccaagcaggagtgttctttactggactgtacctcatagcccttggaactggaggcataaaaccttgtgtctcatcatttggggcagaccaatttgatgacactgatgaggctgagaagaagaacaagggctctttcttcaattggttctatttctcaatcaatatcggtgcacttgtggcttcctctgtgcttgtttggatgcaaacaaatgttggatggggttggggatttggaattcctgctgtggctatggcgcttgctgttgtgagtttcttttctggtactcgcttgtatcgtaacctgaggcctggtgggagtcccctgactcgcatttgccaggtggttgtcgcatccttcaggaaatataaagaacaagtgcctagggataagtctctattgtttgagactgcagacgaggaatctgcggttaaaggaagccgcaagcttgatcacacagaacaactaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015833 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022857 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035672 GO:0035673 GO:0040007 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055044 GO:0055085 GO:0060560 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

293

Amino Acids

32.46

Weight (kDa)

7.99

Isoelectric Point (pI)

18.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021280)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g15260
rosa_multiflora	Rmu_co8123010.1_g000001 Rmu_sc0003267.1_g000045
rosa_samantha	Rh3CG131700 Rh3DG130000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	251
AciI	CCGC	2 cut(s)	836, 850
AclWI	GGATC	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	645
AcuI	CTGAAG	1 cut(s)	751
AdeI	CACNNNGTG	1 cut(s)	377
AfaI	GTAC	2 cut(s)	440, 694
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	359, 550
AjnI	CCWGG	2 cut(s)	718, 747
AluBI	AGCT	3 cut(s)	89, 266, 856
AluI	AGCT	3 cut(s)	89, 266, 856
Alw21I	GWGCWC	1 cut(s)	583
Alw26I	GTCTC	3 cut(s)	484, 807, 809
Alw44I	GTGCAC	1 cut(s)	579
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	1 cut(s)	716
ApaLI	GTGCAC	1 cut(s)	579
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	645
AspA2I	CCTAGG	1 cut(s)	791
AspLEI	GCGC	1 cut(s)	667
AvrII	CCTAGG	1 cut(s)	791
AxyI	CCTNAGG	1 cut(s)	713
BaeGI	GKGCMC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	583
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	2 cut(s)	23, 621
BcgI	CGANNNNNNTGC	2 cut(s)	815, 849
BciT130I	CCWGG	2 cut(s)	720, 749
BclI	TGATCA	1 cut(s)	859
BcoDI	GTCTC	3 cut(s)	484, 807, 809
BfaI	CTAG	3 cut(s)	104, 263, 792
BfmI	CTRYAG	1 cut(s)	819
BfoI	RGCGCY	1 cut(s)	668
BisI	GCNGC	2 cut(s)	300, 850
BlnI	CCTAGG	1 cut(s)	791
BlsI	GCNGC	2 cut(s)	301, 851
Bme1390I	CCNGG	2 cut(s)	720, 749
BmrFI	CCNGG	2 cut(s)	720, 749
BmsI	GCATC	5 cut(s)	4, 259, 359, 600, 770
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	277, 451, 791
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	436, 463
Bse21I	CCTNAGG	1 cut(s)	713
BseBI	CCWGG	2 cut(s)	720, 749
BseDI	CCNNGG	3 cut(s)	277, 451, 791
BseGI	GGATG	3 cut(s)	615, 632, 761
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	2 cut(s)	513, 704
BseNI	ACTGG	2 cut(s)	436, 463
BseSI	GKGCMC	1 cut(s)	583
BseXI	GCAGC	1 cut(s)	286
BshFI	GGCC	1 cut(s)	718
BsiHKAI	GWGCWC	1 cut(s)	583
BslFI	GGGAC	2 cut(s)	46, 714
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	3 cut(s)	484, 807, 809
BsmFI	GGGAC	2 cut(s)	46, 714
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	718
Bsp1286I	GDGCHC	2 cut(s)	542, 583
Bsp143I	GATC	2 cut(s)	408, 859
BspACI	CCGC	2 cut(s)	836, 850
BspANI	GGCC	1 cut(s)	718
BspCNI	CTCAG	2 cut(s)	514, 705
BspMAI	CTGCAG	1 cut(s)	823
BspPI	GGATC	1 cut(s)	403
BsrI	ACTGG	2 cut(s)	436, 463
BssECI	CCNNGG	3 cut(s)	277, 451, 791
BssMI	GATC	2 cut(s)	408, 859
BssT1I	CCWWGG	3 cut(s)	277, 451, 791
Bst2UI	CCWGG	2 cut(s)	720, 749
Bst4CI	ACNGT	1 cut(s)	438
BstC8I	GCNNGC	3 cut(s)	57, 669, 854
BstDEI	CTNAG	3 cut(s)	522, 713, 875
BstF5I	GGATG	3 cut(s)	615, 632, 761
BstH2I	RGCGCY	1 cut(s)	668
BstHHI	GCGC	1 cut(s)	667
BstKTI	GATC	2 cut(s)	411, 862
BstMAI	GTCTC	3 cut(s)	484, 807, 809
BstMBI	GATC	2 cut(s)	408, 859
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 587
BstNI	CCWGG	2 cut(s)	720, 749
BstNSI	RCATGY	1 cut(s)	234
BstSCI	CCNGG	2 cut(s)	718, 747
BstSFI	CTRYAG	1 cut(s)	819
BstSLI	GKGCMC	1 cut(s)	583
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
Bsu36I	CCTNAGG	1 cut(s)	713
BsuRI	GGCC	1 cut(s)	718
BtsCI	GGATG	3 cut(s)	615, 632, 761
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	3 cut(s)	57, 669, 854
CfoI	GCGC	1 cut(s)	667
Csp6I	GTAC	2 cut(s)	439, 693
CviAII	CATG	3 cut(s)	61, 81, 231
CviQI	GTAC	2 cut(s)	439, 693
DdeI	CTNAG	3 cut(s)	522, 713, 875
DpnI	GATC	2 cut(s)	410, 861
DpnII	GATC	2 cut(s)	408, 859
DraIII	CACNNNGTG	1 cut(s)	377
Eco130I	CCWWGG	3 cut(s)	277, 451, 791
Eco147I	AGGCCT	1 cut(s)	718
Eco24I	GRGCYC	1 cut(s)	542
Eco57I	CTGAAG	1 cut(s)	751
Eco81I	CCTNAGG	1 cut(s)	713
EcoRI	GAATTC	1 cut(s)	645
EcoRII	CCWGG	2 cut(s)	718, 747
EcoT14I	CCWWGG	3 cut(s)	277, 451, 791
EcoT22I	ATGCAT	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	542
ErhI	CCWWGG	3 cut(s)	277, 451, 791
FaeI	CATG	3 cut(s)	64, 84, 234
FalI	AAGNNNNNCTT	2 cut(s)	115, 147
FaqI	GGGAC	2 cut(s)	46, 714
FatI	CATG	3 cut(s)	60, 80, 230
FbaI	TGATCA	1 cut(s)	859
Fnu4HI	GCNGC	2 cut(s)	300, 850
FokI	GGATG	3 cut(s)	622, 639, 748
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	2 cut(s)	300, 850
FspBI	CTAG	3 cut(s)	104, 263, 792
GlaI	GCGC	1 cut(s)	666
GluI	GCNGC	2 cut(s)	300, 850
GsuI	CTGGAG	1 cut(s)	480
HaeII	RGCGCY	1 cut(s)	668
HaeIII	GGCC	1 cut(s)	718
HhaI	GCGC	1 cut(s)	667
Hin1II	CATG	3 cut(s)	64, 84, 234
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HindIII	AAGCTT	2 cut(s)	87, 854
HinfI	GANTC	3 cut(s)	727, 736, 830
Hpy166II	GTNNAC	1 cut(s)	581
Hpy188III	TCNNGA	1 cut(s)	769
Hpy8I	GTNNAC	1 cut(s)	581
HpyAV	CCTTC	3 cut(s)	313, 353, 775
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4V	TGCA	5 cut(s)	272, 396, 581, 613, 821
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 587
HpyF3I	CTNAG	3 cut(s)	522, 713, 875
Hsp92II	CATG	3 cut(s)	64, 84, 234
HspAI	GCGC	1 cut(s)	665
Ksp22I	TGATCA	1 cut(s)	859
Kzo9I	GATC	2 cut(s)	408, 859
LmnI	GCTCC	1 cut(s)	254
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	5 cut(s)	4, 259, 359, 600, 770
MaeI	CTAG	3 cut(s)	104, 263, 792
MaeIII	GTNAC	5 cut(s)	47, 211, 238, 377, 707
MalI	GATC	2 cut(s)	410, 861
MboI	GATC	2 cut(s)	408, 859
MboII	GAAGA	6 cut(s)	20, 76, 294, 538, 538, 541
MfeI	CAATTG	1 cut(s)	550
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	2 cut(s)	542, 583
MluCI	AATT	5 cut(s)	160, 217, 500, 550, 645
MlyI	GAGTC	2 cut(s)	730, 736
MmeI	TCCRAC	2 cut(s)	425, 604
MnlI	CCTC	9 cut(s)	176, 180, 190, 452, 455, 511, 604, 708, 820
Mph1103I	ATGCAT	1 cut(s)	274
MseI	TTAA	4 cut(s)	144, 159, 204, 840
MspR9I	CCNGG	2 cut(s)	720, 749
MunI	CAATTG	1 cut(s)	550
Mva1269I	GAATGC	1 cut(s)	119
MvaI	CCWGG	2 cut(s)	720, 749
MwoI	GCNNNNNNNGC	2 cut(s)	263, 587
NdeII	GATC	2 cut(s)	408, 859
NlaIII	CATG	3 cut(s)	64, 84, 234
NmuCI	GTSAC	3 cut(s)	211, 238, 377
NsiI	ATGCAT	1 cut(s)	274
NspI	RCATGY	1 cut(s)	234
PceI	AGGCCT	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	1 cut(s)	703
PctI	GAATGC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	830
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	301, 851
PleI	GAGTC	2 cut(s)	730, 735
PpsI	GAGTC	2 cut(s)	730, 735
Psp6I	CCWGG	2 cut(s)	718, 747
PspGI	CCWGG	2 cut(s)	718, 747
PstI	CTGCAG	1 cut(s)	823
PsuI	RGATCY	1 cut(s)	408
RsaI	GTAC	2 cut(s)	440, 694
RsaNI	GTAC	2 cut(s)	439, 693
SaqAI	TTAA	4 cut(s)	144, 159, 204, 840
SatI	GCNGC	2 cut(s)	300, 850
Sau3AI	GATC	2 cut(s)	408, 859
SchI	GAGTC	2 cut(s)	730, 736
ScrFI	CCNGG	2 cut(s)	720, 749
SduI	GDGCHC	2 cut(s)	542, 583
SfaNI	GCATC	5 cut(s)	4, 259, 359, 600, 770
SfcI	CTRYAG	1 cut(s)	819
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	5 cut(s)	160, 217, 500, 550, 645
SseBI	AGGCCT	1 cut(s)	718
SsiI	CCGC	2 cut(s)	836, 850
SspMI	CTAG	3 cut(s)	104, 263, 792
StuI	AGGCCT	1 cut(s)	718
StyD4I	CCNGG	2 cut(s)	718, 747
StyI	CCWWGG	3 cut(s)	277, 451, 791
TaaI	ACNGT	1 cut(s)	438
TasI	AATT	5 cut(s)	160, 217, 500, 550, 645
TauI	GCSGC	1 cut(s)	852
TfiI	GAWTC	1 cut(s)	830
Tru1I	TTAA	4 cut(s)	144, 159, 204, 840
Tru9I	TTAA	4 cut(s)	144, 159, 204, 840
TscAI	CASTG	1 cut(s)	517
TseFI	GTSAC	3 cut(s)	211, 238, 377
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	3 cut(s)	211, 238, 377
TspDTI	ATGAA	3 cut(s)	77, 126, 194
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	517
Van91I	CCANNNNNTGG	1 cut(s)	251
VneI	GTGCAC	1 cut(s)	579
XapI	RAATTY	1 cut(s)	645
XceI	RCATGY	1 cut(s)	234
XmaJI	CCTAGG	1 cut(s)	791
XspI	CTAG	3 cut(s)	104, 263, 792
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.