Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8123010.1

Orthogroup ID

OG0021280

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 546

Gene Structure 545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8123010.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 545 bp

atgacactattgacattatcagcatcagttgaagggctaaaaccactatgtgacaaaaacaatgtgtgcaatccaacacagatccaagcaggagtgttctttactggactgtacctcatagcccttggaactggaggcataaaaccttgtgtctcatcatttggggcagaccaatttgatgacactgatgaggctgagaagaagaacaagggctctttcttcaattggttctatttctcaatcaatattggtgcacttgtggcttcctctgtgcttgtttggatgcaaacaaatgttggatggggttggggatttggaattcctgctgtggctatggcgcttgctgttgtgagtttcttttctggtactcgcttgtatcgtaacctgaggcctggtgggagtcccctgactcgcctttgccaggtggttgtcgcatccttcaggaaatataaagaacaagtgcctagggataagtctctattgtttgagactgcagacgaggaatctgcggttaaaggaagccgcaagcttgatcacacagaaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015833 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022857 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035672 GO:0035673 GO:0040007 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055044 GO:0055085 GO:0060560 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

181

Amino Acids

19.78

Weight (kDa)

8.34

Isoelectric Point (pI)

19.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021280)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g15260
rosa_multiflora	Rmu_co8123010.1_g000001 Rmu_sc0003267.1_g000045
rosa_samantha	Rh3CG131700 Rh3DG130000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	509, 523
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	318
AcuI	CTGAAG	1 cut(s)	424
AdeI	CACNNNGTG	1 cut(s)	50
AfaI	GTAC	2 cut(s)	113, 367
AfiI	CCNNNNNNNGG	1 cut(s)	421
AgsI	TTSAA	2 cut(s)	32, 223
AjnI	CCWGG	2 cut(s)	391, 420
AluBI	AGCT	1 cut(s)	529
AluI	AGCT	1 cut(s)	529
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	3 cut(s)	157, 480, 482
Alw44I	GTGCAC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	1 cut(s)	389
ApaLI	GTGCAC	1 cut(s)	252
ApoI	RAATTY	1 cut(s)	318
AspA2I	CCTAGG	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	340
AvrII	CCTAGG	1 cut(s)	464
AxyI	CCTNAGG	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	256
BccI	CCATC	1 cut(s)	294
BcgI	CGANNNNNNTGC	2 cut(s)	488, 522
BciT130I	CCWGG	2 cut(s)	393, 422
BclI	TGATCA	1 cut(s)	532
BcoDI	GTCTC	3 cut(s)	157, 480, 482
BfaI	CTAG	1 cut(s)	465
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	341
BisI	GCNGC	1 cut(s)	523
BlnI	CCTAGG	1 cut(s)	464
BlsI	GCNGC	1 cut(s)	524
Bme1390I	CCNGG	2 cut(s)	393, 422
BmrFI	CCNGG	2 cut(s)	393, 422
BmsI	GCATC	3 cut(s)	32, 273, 443
BpmI	CTGGAG	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	124, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse1I	ACTGG	2 cut(s)	109, 136
Bse21I	CCTNAGG	1 cut(s)	386
BseBI	CCWGG	2 cut(s)	393, 422
BseDI	CCNNGG	2 cut(s)	124, 464
BseGI	GGATG	3 cut(s)	288, 305, 434
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseMII	CTCAG	2 cut(s)	186, 377
BseNI	ACTGG	2 cut(s)	109, 136
BseSI	GKGCMC	1 cut(s)	256
BshFI	GGCC	1 cut(s)	391
BsiHKAI	GWGCWC	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmAI	GTCTC	3 cut(s)	157, 480, 482
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	391
Bsp1286I	GDGCHC	2 cut(s)	215, 256
Bsp143I	GATC	2 cut(s)	81, 532
BspACI	CCGC	2 cut(s)	509, 523
BspANI	GGCC	1 cut(s)	391
BspCNI	CTCAG	2 cut(s)	187, 378
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	109, 136
BssECI	CCNNGG	2 cut(s)	124, 464
BssMI	GATC	2 cut(s)	81, 532
BssT1I	CCWWGG	2 cut(s)	124, 464
Bst2UI	CCWGG	2 cut(s)	393, 422
Bst4CI	ACNGT	1 cut(s)	111
BstC8I	GCNNGC	2 cut(s)	342, 527
BstDEI	CTNAG	2 cut(s)	195, 386
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	3 cut(s)	288, 305, 434
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	2 cut(s)	84, 535
BstMAI	GTCTC	3 cut(s)	157, 480, 482
BstMBI	GATC	2 cut(s)	81, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	2 cut(s)	393, 422
BstSCI	CCNGG	2 cut(s)	391, 420
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
Bsu36I	CCTNAGG	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	391
BtsCI	GGATG	3 cut(s)	288, 305, 434
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	342, 527
CfoI	GCGC	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	112, 366
CviJI	RGCY	9 cut(s)	37, 122, 194, 213, 263, 332, 391, 522, 529
CviKI_1	RGCY	9 cut(s)	37, 122, 194, 213, 263, 332, 391, 522, 529
CviQI	GTAC	2 cut(s)	112, 366
DdeI	CTNAG	2 cut(s)	195, 386
DpnI	GATC	2 cut(s)	83, 534
DpnII	GATC	2 cut(s)	81, 532
DraIII	CACNNNGTG	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	124, 464
Eco147I	AGGCCT	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	424
Eco81I	CCTNAGG	1 cut(s)	386
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	318
EcoRII	CCWGG	2 cut(s)	391, 420
EcoT14I	CCWWGG	2 cut(s)	124, 464
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	2 cut(s)	124, 464
FaiI	YATR	5 cut(s)	49, 119, 140, 335, 450
FaqI	GGGAC	1 cut(s)	387
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	1 cut(s)	523
FokI	GGATG	3 cut(s)	295, 312, 421
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	523
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	523
GsuI	CTGGAG	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	391
HhaI	GCGC	1 cut(s)	340
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	3 cut(s)	400, 409, 503
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188III	TCNNGA	1 cut(s)	442
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	26, 448
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4V	TGCA	4 cut(s)	69, 254, 286, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	195, 386
HspAI	GCGC	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	2 cut(s)	81, 532
LweI	GCATC	3 cut(s)	32, 273, 443
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	2 cut(s)	50, 380
MalI	GATC	2 cut(s)	83, 534
MboI	GATC	2 cut(s)	81, 532
MboII	GAAGA	3 cut(s)	211, 211, 214
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	2 cut(s)	215, 256
MluCI	AATT	3 cut(s)	173, 223, 318
MlyI	GAGTC	2 cut(s)	403, 409
MmeI	TCCRAC	2 cut(s)	98, 277
MnlI	CCTC	6 cut(s)	125, 128, 184, 277, 381, 493
MseI	TTAA	1 cut(s)	513
MspR9I	CCNGG	2 cut(s)	393, 422
MunI	CAATTG	1 cut(s)	223
MvaI	CCWGG	2 cut(s)	393, 422
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	2 cut(s)	81, 532
NmuCI	GTSAC	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	503
PkrI	GCNGC	1 cut(s)	524
PleI	GAGTC	2 cut(s)	403, 408
PpsI	GAGTC	2 cut(s)	403, 408
Psp6I	CCWGG	2 cut(s)	391, 420
PspGI	CCWGG	2 cut(s)	391, 420
PstI	CTGCAG	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	2 cut(s)	113, 367
RsaNI	GTAC	2 cut(s)	112, 366
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	1 cut(s)	523
Sau3AI	GATC	2 cut(s)	81, 532
SchI	GAGTC	2 cut(s)	403, 409
ScrFI	CCNGG	2 cut(s)	393, 422
SduI	GDGCHC	2 cut(s)	215, 256
SetI	ASST	5 cut(s)	117, 148, 387, 426, 531
SfaNI	GCATC	3 cut(s)	32, 273, 443
SfcI	CTRYAG	1 cut(s)	492
Sse9I	AATT	3 cut(s)	173, 223, 318
SseBI	AGGCCT	1 cut(s)	391
SsiI	CCGC	2 cut(s)	509, 523
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	1 cut(s)	465
StuI	AGGCCT	1 cut(s)	391
StyD4I	CCNGG	2 cut(s)	391, 420
StyI	CCWWGG	2 cut(s)	124, 464
TaaI	ACNGT	1 cut(s)	111
TasI	AATT	3 cut(s)	173, 223, 318
TauI	GCSGC	1 cut(s)	525
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	50
TspRI	CASTG	1 cut(s)	190
VneI	GTGCAC	1 cut(s)	252
XagI	CCTNNNNNAGG	1 cut(s)	419
XapI	RAATTY	1 cut(s)	318
XmaJI	CCTAGG	1 cut(s)	464
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.