Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0021280

Physical Location & Seq

Genomic Coordinates Forward (+)

11109195 .. 11111338

Gene Structure 2144 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG130000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGACACAACTATACCTACATTTAGCAATGCAGTTAAGGTTTGATCCATTCGAATCGCGTGCCATGCACAGATTTGTGCACATGATGGTTACCATATATGAGATATCATTCACAGTGAACCCAGATTTAAATAAACATTGTGATATAGAAGCCGATTGTACACCAAGTTTTTTTTTTTTGAACTTGAAGATGAGCTTGTCTCTCACAGAAATGGCAGAAGACGATGTCTATACGAAAGATGGAACAACGGATTATTGTAACCAGCCTGCCATGAAGAACAAAACAGGAACATGGAAAGCTTGTCCTTACATTCTAGGAAATGAATGCTGTGAAAGATTGGCTTACTATGGTATTAACACCAATCTTGTTAATTACCTCAAGTTCCAAATGAACCAGAGGAATGTTGAGGCTGTTAATAATGTCACAAATTGGTCAGGCACATGCTATGTGACACCATTACTTGGAGCATTTCTAGCTGATGCATACCTTGGAAGATATTACACAAGCGCTGCCTTCTCTATCATCTATGTTTTTGGAATGACACTATTGACATTATCAGCATCAGTTGAAGGGCTAAAACCACTATGTGACAAAAACAATGTGTGCAATCCAACACAGATCCAAGCAGGAGTGTTCTTTACTGGACTGTACCTCATAGCCCTTGGAACTGGAGGCATAAAACCTTGTGTCTCATCATTTGGGGCAGACCAATTTGATGACACTGATGAGGCTGAGAAGAAGAACAAGGGCTCTTTCTTCAATTGGTTCTATTTCTCAATCAATATTGGTGCACTTGTGGCTTCCTCTGTGCTTGTTTGGATGCAAACAAATGTTGGATGGGGTTGGGGATTTGGAATTCCTGCTGTGGCTATGGCGCTTGCTGTTGTGAGTTTCTTTTCTGGTACTCGCTTGTATCGTAACCTGAGGCCTGGTGGGAGTCCCCTGACTCGCATTTGCCAGGTGGTTGTCGCATCCTTCAGGGAATATAAAGAACAAGTGCCTAGGGATAAGTCTCTATTGTTTGAGACTGCAGACGAGGAATCTGTGGTTAAAGGAAGCCGCAAGCTTGATCACACAGAACAACTAAGTTTCTTGGACAAGGCAGCAGTTGAGACTCAATCAGACAGAATCAAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015833 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022857 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035672 GO:0035673 GO:0040007 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055044 GO:0055085 GO:0060560 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

379

Amino Acids

42.48

Weight (kDa)

5.81

Isoelectric Point (pI)

24.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	169 - 373	1.4e-58	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021280)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g15260
rosa_multiflora	Rmu_co8123010.1_g000001 Rmu_sc0003267.1_g000045
rosa_samantha	Rh3CG131700 Rh3DG130000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	461
AccII	CGCG	1 cut(s)	58
AciI	CCGC	1 cut(s)	1060
AclWI	GGATC	2 cut(s)	38, 613
AcsI	RAATTY	1 cut(s)	855
AcuI	CTGAAG	1 cut(s)	961
AdeI	CACNNNGTG	1 cut(s)	587
AfaI	GTAC	3 cut(s)	160, 650, 904
AfeI	AGCGCT	1 cut(s)	508
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	4 cut(s)	181, 187, 569, 760
AjnI	CCWGG	2 cut(s)	928, 957
AluBI	AGCT	4 cut(s)	195, 299, 476, 1066
AluI	AGCT	4 cut(s)	195, 299, 476, 1066
Alw21I	GWGCWC	2 cut(s)	81, 793
Alw26I	GTCTC	5 cut(s)	204, 694, 1017, 1019, 1106
Alw44I	GTGCAC	2 cut(s)	77, 789
AlwI	GGATC	2 cut(s)	38, 613
Aor51HI	AGCGCT	1 cut(s)	508
AoxI	GGCC	1 cut(s)	926
ApaLI	GTGCAC	2 cut(s)	77, 789
ApeKI	GCWGC	2 cut(s)	509, 1103
ApoI	RAATTY	1 cut(s)	855
AspA2I	CCTAGG	1 cut(s)	1001
AspLEI	GCGC	2 cut(s)	509, 877
AsuII	TTCGAA	1 cut(s)	51
AvrII	CCTAGG	1 cut(s)	1001
AxyI	CCTNAGG	1 cut(s)	923
BaeGI	GKGCMC	2 cut(s)	81, 793
BanII	GRGCYC	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	2 cut(s)	81, 793
BbvI	GCAGC	2 cut(s)	496, 1115
BccI	CCATC	3 cut(s)	79, 233, 831
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	2 cut(s)	930, 959
BclI	TGATCA	1 cut(s)	1069
BcoDI	GTCTC	5 cut(s)	204, 694, 1017, 1019, 1106
BfaI	CTAG	3 cut(s)	314, 473, 1002
BfmI	CTRYAG	1 cut(s)	1029
BfoI	RGCGCY	2 cut(s)	510, 878
BisI	GCNGC	3 cut(s)	510, 1060, 1104
BlnI	CCTAGG	1 cut(s)	1001
BlsI	GCNGC	3 cut(s)	511, 1061, 1105
Bme1390I	CCNGG	2 cut(s)	930, 959
BmrFI	CCNGG	2 cut(s)	930, 959
BmsI	GCATC	4 cut(s)	469, 569, 810, 980
BpiI	GAAGAC	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
BpmI	CTGGAG	1 cut(s)	690
Bpu14I	TTCGAA	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	362
BsaJI	CCNNGG	3 cut(s)	487, 661, 1001
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse1I	ACTGG	2 cut(s)	646, 673
Bse21I	CCTNAGG	1 cut(s)	923
Bse3DI	GCAATG	1 cut(s)	33
BseBI	CCWGG	2 cut(s)	930, 959
BseDI	CCNNGG	3 cut(s)	487, 661, 1001
BseGI	GGATG	3 cut(s)	825, 842, 971
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	723, 914
BseNI	ACTGG	2 cut(s)	646, 673
BseSI	GKGCMC	2 cut(s)	81, 793
BseXI	GCAGC	2 cut(s)	496, 1115
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	928
BsiHKAI	GWGCWC	2 cut(s)	81, 793
BslFI	GGGAC	1 cut(s)	924
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	5 cut(s)	204, 694, 1017, 1019, 1106
BsmFI	GGGAC	1 cut(s)	924
BsmI	GAATGC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	928
Bsp119I	TTCGAA	1 cut(s)	51
Bsp1286I	GDGCHC	3 cut(s)	81, 752, 793
Bsp1407I	TGTACA	1 cut(s)	158
Bsp143I	GATC	3 cut(s)	43, 618, 1069
BspACI	CCGC	1 cut(s)	1060
BspANI	GGCC	1 cut(s)	928
BspCNI	CTCAG	2 cut(s)	724, 915
BspFNI	CGCG	1 cut(s)	58
BspMAI	CTGCAG	1 cut(s)	1033
BspPI	GGATC	2 cut(s)	38, 613
BspT104I	TTCGAA	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	33
BsrGI	TGTACA	1 cut(s)	158
BsrI	ACTGG	2 cut(s)	646, 673
BssECI	CCNNGG	3 cut(s)	487, 661, 1001
BssMI	GATC	3 cut(s)	43, 618, 1069
BssT1I	CCWWGG	3 cut(s)	487, 661, 1001
Bst2UI	CCWGG	2 cut(s)	930, 959
Bst4CI	ACNGT	2 cut(s)	115, 648
BstAUI	TGTACA	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	4 cut(s)	60, 267, 879, 1064
BstDEI	CTNAG	3 cut(s)	732, 923, 1085
BstEII	GGTNACC	1 cut(s)	88
BstF5I	GGATG	3 cut(s)	825, 842, 971
BstFNI	CGCG	1 cut(s)	58
BstH2I	RGCGCY	2 cut(s)	510, 878
BstHHI	GCGC	2 cut(s)	509, 877
BstKTI	GATC	3 cut(s)	46, 621, 1072
BstMAI	GTCTC	5 cut(s)	204, 694, 1017, 1019, 1106
BstMBI	GATC	3 cut(s)	43, 618, 1069
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 473, 797
BstNI	CCWGG	2 cut(s)	930, 959
BstNSI	RCATGY	1 cut(s)	444
BstPI	GGTNACC	1 cut(s)	88
BstSCI	CCNGG	2 cut(s)	928, 957
BstSFI	CTRYAG	1 cut(s)	1029
BstSLI	GKGCMC	2 cut(s)	81, 793
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	2 cut(s)	496, 1115
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	618
BstYI	RGATCY	1 cut(s)	618
Bsu36I	CCTNAGG	1 cut(s)	923
BsuRI	GGCC	1 cut(s)	928
BtsCI	GGATG	3 cut(s)	825, 842, 971
BtsIMutI	CAGTG	2 cut(s)	120, 720
Cac8I	GCNNGC	4 cut(s)	60, 267, 879, 1064
CfoI	GCGC	2 cut(s)	509, 877
Csp6I	GTAC	3 cut(s)	159, 649, 903
CviAII	CATG	5 cut(s)	64, 82, 271, 291, 441
CviQI	GTAC	3 cut(s)	159, 649, 903
DdeI	CTNAG	3 cut(s)	732, 923, 1085
DpnI	GATC	3 cut(s)	45, 620, 1071
DpnII	GATC	3 cut(s)	43, 618, 1069
DraI	TTTAAA	1 cut(s)	129
DraIII	CACNNNGTG	1 cut(s)	587
Eco130I	CCWWGG	3 cut(s)	487, 661, 1001
Eco147I	AGGCCT	1 cut(s)	928
Eco24I	GRGCYC	1 cut(s)	752
Eco32I	GATATC	1 cut(s)	105
Eco47III	AGCGCT	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	961
Eco81I	CCTNAGG	1 cut(s)	923
Eco91I	GGTNACC	1 cut(s)	88
EcoO65I	GGTNACC	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	855
EcoRII	CCWGG	2 cut(s)	928, 957
EcoRV	GATATC	1 cut(s)	105
EcoT14I	CCWWGG	3 cut(s)	487, 661, 1001
EcoT22I	ATGCAT	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	752
ErhI	CCWWGG	3 cut(s)	487, 661, 1001
FaeI	CATG	5 cut(s)	67, 85, 274, 294, 444
FalI	AAGNNNNNCTT	4 cut(s)	179, 211, 325, 357
FaqI	GGGAC	1 cut(s)	924
FatI	CATG	5 cut(s)	63, 81, 270, 290, 440
FbaI	TGATCA	1 cut(s)	1069
Fnu4HI	GCNGC	3 cut(s)	510, 1060, 1104
FokI	GGATG	3 cut(s)	832, 849, 958
FriOI	GRGCYC	1 cut(s)	752
Fsp4HI	GCNGC	3 cut(s)	510, 1060, 1104
FspBI	CTAG	3 cut(s)	314, 473, 1002
GlaI	GCGC	2 cut(s)	508, 876
GluI	GCNGC	3 cut(s)	510, 1060, 1104
GsuI	CTGGAG	1 cut(s)	690
HaeII	RGCGCY	2 cut(s)	510, 878
HaeIII	GGCC	1 cut(s)	928
HhaI	GCGC	2 cut(s)	509, 877
Hin1II	CATG	5 cut(s)	67, 85, 274, 294, 444
Hin6I	GCGC	2 cut(s)	507, 875
HinP1I	GCGC	2 cut(s)	507, 875
HindIII	AAGCTT	2 cut(s)	297, 1064
HinfI	GANTC	6 cut(s)	53, 937, 946, 1040, 1114, 1128
Hpy166II	GTNNAC	4 cut(s)	79, 118, 161, 791
Hpy188I	TCNGA	1 cut(s)	1123
Hpy8I	GTNNAC	4 cut(s)	79, 118, 161, 791
HpyAV	CCTTC	3 cut(s)	523, 563, 985
HpyCH4III	ACNGT	2 cut(s)	115, 648
HpyCH4V	TGCA	8 cut(s)	31, 67, 79, 482, 606, 791, 823, 1031
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 473, 797
HpyF3I	CTNAG	3 cut(s)	732, 923, 1085
Hsp92II	CATG	5 cut(s)	67, 85, 274, 294, 444
HspAI	GCGC	2 cut(s)	507, 875
Ksp22I	TGATCA	1 cut(s)	1069
Kzo9I	GATC	3 cut(s)	43, 618, 1069
LmnI	GCTCC	1 cut(s)	464
Lsp1109I	GCAGC	2 cut(s)	496, 1115
LweI	GCATC	4 cut(s)	469, 569, 810, 980
MaeI	CTAG	3 cut(s)	314, 473, 1002
MaeIII	GTNAC	6 cut(s)	88, 257, 421, 448, 587, 917
MalI	GATC	3 cut(s)	45, 620, 1071
MboI	GATC	3 cut(s)	43, 618, 1069
MboII	GAAGA	7 cut(s)	199, 230, 286, 504, 748, 748, 751
MfeI	CAATTG	1 cut(s)	760
MflI	RGATCY	1 cut(s)	618
MhlI	GDGCHC	3 cut(s)	81, 752, 793
MluCI	AATT	5 cut(s)	370, 427, 710, 760, 855
MlyI	GAGTC	3 cut(s)	940, 946, 1108
MmeI	TCCRAC	2 cut(s)	635, 814
MnlI	CCTC	9 cut(s)	386, 390, 400, 662, 665, 721, 814, 918, 1030
Mph1103I	ATGCAT	1 cut(s)	484
MseI	TTAA	6 cut(s)	35, 128, 354, 369, 414, 1050
MslI	CAYNNNNRTG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	930, 959
MunI	CAATTG	1 cut(s)	760
Mva1269I	GAATGC	1 cut(s)	329
MvaI	CCWGG	2 cut(s)	930, 959
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	3 cut(s)	64, 473, 797
NdeII	GATC	3 cut(s)	43, 618, 1069
NlaIII	CATG	5 cut(s)	67, 85, 274, 294, 444
NmuCI	GTSAC	3 cut(s)	421, 448, 587
NsiI	ATGCAT	1 cut(s)	484
NspI	RCATGY	1 cut(s)	444
NspV	TTCGAA	1 cut(s)	51
PceI	AGGCCT	1 cut(s)	928
PcsI	WCGNNNNNNNCGW	1 cut(s)	913
PctI	GAATGC	1 cut(s)	329
PfeI	GAWTC	3 cut(s)	53, 1040, 1128
PflFI	GACNNNGTC	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	461
PkrI	GCNGC	3 cut(s)	511, 1061, 1105
PleI	GAGTC	3 cut(s)	940, 945, 1108
PpsI	GAGTC	3 cut(s)	940, 945, 1108
Psp6I	CCWGG	2 cut(s)	928, 957
PspEI	GGTNACC	1 cut(s)	88
PspGI	CCWGG	2 cut(s)	928, 957
PstI	CTGCAG	1 cut(s)	1033
PsuI	RGATCY	1 cut(s)	618
PsyI	GACNNNGTC	1 cut(s)	224
RsaI	GTAC	3 cut(s)	160, 650, 904
RsaNI	GTAC	3 cut(s)	159, 649, 903
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	6 cut(s)	35, 128, 354, 369, 414, 1050
SatI	GCNGC	3 cut(s)	510, 1060, 1104
Sau3AI	GATC	3 cut(s)	43, 618, 1069
SchI	GAGTC	3 cut(s)	940, 946, 1108
ScrFI	CCNGG	2 cut(s)	930, 959
SduI	GDGCHC	3 cut(s)	81, 752, 793
SfaNI	GCATC	4 cut(s)	469, 569, 810, 980
SfcI	CTRYAG	1 cut(s)	1029
SfuI	TTCGAA	1 cut(s)	51
SmiI	ATTTAAAT	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	5 cut(s)	370, 427, 710, 760, 855
SseBI	AGGCCT	1 cut(s)	928
SsiI	CCGC	1 cut(s)	1060
SspI	AATATT	1 cut(s)	784
SspMI	CTAG	3 cut(s)	314, 473, 1002
StuI	AGGCCT	1 cut(s)	928
StyD4I	CCNGG	2 cut(s)	928, 957
StyI	CCWWGG	3 cut(s)	487, 661, 1001
SwaI	ATTTAAAT	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	115, 648
TaqI	TCGA	1 cut(s)	51
TasI	AATT	5 cut(s)	370, 427, 710, 760, 855
TatI	WGTACW	1 cut(s)	158
TauI	GCSGC	1 cut(s)	1062
TfiI	GAWTC	3 cut(s)	53, 1040, 1128
Tru1I	TTAA	6 cut(s)	35, 128, 354, 369, 414, 1050
Tru9I	TTAA	6 cut(s)	35, 128, 354, 369, 414, 1050
TscAI	CASTG	2 cut(s)	120, 727
TseFI	GTSAC	3 cut(s)	421, 448, 587
TseI	GCWGC	2 cut(s)	509, 1103
Tsp45I	GTSAC	3 cut(s)	421, 448, 587
TspDTI	ATGAA	3 cut(s)	287, 336, 404
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	2 cut(s)	120, 727
Tth111I	GACNNNGTC	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	461
VneI	GTGCAC	2 cut(s)	77, 789
XapI	RAATTY	1 cut(s)	855
XceI	RCATGY	1 cut(s)	444
XmaJI	CCTAGG	1 cut(s)	1001
XspI	CTAG	3 cut(s)	314, 473, 1002
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.