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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G08670 |
| fragaria_vesca | FvH4_6g09520 FvH4_6g09520 FvH4_6g09520 |
| malus_domestica | MD04G1176700.v1.1 MD12G1191700.v1.1 |
| prunus_persica | Prupe.6G296400_v2.0.a1 Prupe.6G296400_v2.0.a1 Prupe.6G296400_v2.0.a1 |
| pyrus_communis | pycom04g15610 pycom12g17880 |
| rosa_chinensis | RchiOBHm_Chr3g0460111 |
| rosa_laevigata | RLG00000025043 |
| rosa_multiflora | Rmu_sc0000449.1_g000053 |
| rosa_roxburghii | Rroxscaffold_6G00419830 |
| rosa_rugosa | Rorug03G0039600 |
| rosa_samantha | Rh3AG098000 Rh3BG101100 Rh3CG103200 Rh3DG102400 |
| rosa_wichuraiana | Rw3G008270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1282 |
| Acc36I | ACCTGC | 2 cut(s) | 457, 1282 |
| AccBSI | CCGCTC | 1 cut(s) | 591 |
| AccI | GTMKAC | 5 cut(s) | 379, 495, 599, 1220, 1563 |
| AccII | CGCG | 3 cut(s) | 72, 876, 1618 |
| AclWI | GGATC | 4 cut(s) | 129, 220, 513, 1363 |
| AcoI | YGGCCR | 3 cut(s) | 30, 93, 216 |
| AcsI | RAATTY | 2 cut(s) | 43, 756 |
| AcuI | CTGAAG | 2 cut(s) | 534, 849 |
| AcyI | GRCGYC | 1 cut(s) | 1186 |
| AdeI | CACNNNGTG | 1 cut(s) | 1675 |
| AfaI | GTAC | 2 cut(s) | 670, 1173 |
| AflIII | ACRYGT | 1 cut(s) | 1168 |
| AgsI | TTSAA | 4 cut(s) | 405, 678, 1266, 1651 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 250 |
| AjiI | CACGTC | 1 cut(s) | 1169 |
| AjnI | CCWGG | 3 cut(s) | 746, 1048, 1160 |
| AleI | CACNNNNGTG | 1 cut(s) | 1100 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 637, 669 |
| Alw21I | GWGCWC | 3 cut(s) | 545, 1457, 1616 |
| Alw26I | GTCTC | 3 cut(s) | 559, 846, 1135 |
| AlwI | GGATC | 4 cut(s) | 129, 220, 513, 1363 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1055, 1466 |
| Ama87I | CYCGRG | 1 cut(s) | 843 |
| AoxI | GGCC | 7 cut(s) | 30, 93, 216, 398, 725, 749, 1022 |
| ApeKI | GCWGC | 6 cut(s) | 61, 392, 1055, 1091, 1383, 1666 |
| ApoI | RAATTY | 2 cut(s) | 43, 756 |
| AseI | ATTAAT | 1 cut(s) | 1533 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 460 |
| AspLEI | GCGC | 2 cut(s) | 72, 897 |
| AspS9I | GGNCC | 4 cut(s) | 726, 940, 1041, 1697 |
| AsuHPI | GGTGA | 5 cut(s) | 199, 478, 852, 1113, 1501 |
| AvaI | CYCGRG | 1 cut(s) | 843 |
| AvaII | GGWCC | 3 cut(s) | 940, 1041, 1697 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1446, 1479 |
| BanII | GRGCYC | 3 cut(s) | 545, 1616, 1746 |
| BauI | CACGAG | 1 cut(s) | 538 |
| BbsI | GAAGAC | 5 cut(s) | 165, 1117, 1147, 1265, 1650 |
| Bbv12I | GWGCWC | 3 cut(s) | 545, 1457, 1616 |
| BbvI | GCAGC | 6 cut(s) | 73, 404, 1042, 1078, 1395, 1653 |
| BccI | CCATC | 3 cut(s) | 323, 640, 811 |
| BceAI | ACGGC | 2 cut(s) | 127, 280 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1648, 1682 |
| BciT130I | CCWGG | 3 cut(s) | 748, 1050, 1162 |
| BcoDI | GTCTC | 3 cut(s) | 559, 846, 1135 |
| BfaI | CTAG | 4 cut(s) | 396, 453, 660, 930 |
| BfmI | CTRYAG | 4 cut(s) | 258, 390, 600, 1275 |
| BfuAI | ACCTGC | 2 cut(s) | 457, 1282 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 406 |
| BisI | GCNGC | 8 cut(s) | 62, 93, 115, 393, 1056, 1092, 1384, 1667 |
| BlsI | GCNGC | 8 cut(s) | 63, 94, 116, 394, 1057, 1093, 1385, 1668 |
| Bme1390I | CCNGG | 3 cut(s) | 748, 1050, 1162 |
| Bme18I | GGWCC | 3 cut(s) | 940, 1041, 1697 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 250 |
| BmeT110I | CYCGRG | 1 cut(s) | 843 |
| BmgBI | CACGTC | 1 cut(s) | 1169 |
| BmgT120I | GGNCC | 4 cut(s) | 726, 940, 1041, 1697 |
| BmiI | GGNNCC | 2 cut(s) | 941, 1043 |
| BmrFI | CCNGG | 3 cut(s) | 748, 1050, 1162 |
| BmrI | ACTGGG | 2 cut(s) | 378, 1429 |
| BmsI | GCATC | 3 cut(s) | 857, 1615, 1732 |
| BmuI | ACTGGG | 2 cut(s) | 378, 1429 |
| BpiI | GAAGAC | 5 cut(s) | 165, 1117, 1147, 1265, 1650 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 10, 42 |
| BpmI | CTGGAG | 1 cut(s) | 1443 |
| Bpu10I | CCTNAGC | 1 cut(s) | 352 |
| BpuEI | CTTGAG | 1 cut(s) | 1117 |
| BsaHI | GRCGYC | 1 cut(s) | 1186 |
| BsaJI | CCNNGG | 5 cut(s) | 96, 219, 935, 1161, 1211 |
| Bse118I | RCCGGY | 1 cut(s) | 66 |
| Bse1I | ACTGG | 8 cut(s) | 238, 290, 384, 707, 1291, 1435, 1460, 1667 |
| BseBI | CCWGG | 3 cut(s) | 748, 1050, 1162 |
| BseDI | CCNNGG | 5 cut(s) | 96, 219, 935, 1161, 1211 |
| BseGI | GGATG | 4 cut(s) | 158, 911, 1412, 1684 |
| BseMII | CTCAG | 4 cut(s) | 504, 1412, 1527, 1580 |
| BseNI | ACTGG | 8 cut(s) | 238, 290, 384, 707, 1291, 1435, 1460, 1667 |
| BseRI | GAGGAG | 4 cut(s) | 288, 348, 565, 1200 |
| BseXI | GCAGC | 6 cut(s) | 73, 404, 1042, 1078, 1395, 1653 |
| BseYI | CCCAGC | 1 cut(s) | 1087 |
| BsgI | GTGCAG | 2 cut(s) | 1425, 1652 |
| Bsh1236I | CGCG | 3 cut(s) | 72, 876, 1618 |
| BshFI | GGCC | 7 cut(s) | 32, 95, 218, 400, 727, 751, 1024 |
| BsiHKAI | GWGCWC | 3 cut(s) | 545, 1457, 1616 |
| BsiHKCI | CYCGRG | 1 cut(s) | 843 |
| BsiSI | CCGG | 3 cut(s) | 33, 67, 820 |
| BslFI | GGGAC | 4 cut(s) | 930, 1027, 1138, 1179 |
| BsmAI | GTCTC | 3 cut(s) | 559, 846, 1135 |
| BsmFI | GGGAC | 4 cut(s) | 930, 1027, 1138, 1179 |
| BsmI | GAATGC | 1 cut(s) | 1404 |
| BsnI | GGCC | 7 cut(s) | 32, 95, 218, 400, 727, 751, 1024 |
| BsoBI | CYCGRG | 1 cut(s) | 843 |
| Bsp1286I | GDGCHC | 4 cut(s) | 545, 1457, 1616, 1746 |
| Bsp1407I | TGTACA | 1 cut(s) | 1171 |
| Bsp143I | GATC | 8 cut(s) | 121, 212, 518, 1234, 1355, 1409, 1690, 1701 |
| BspANI | GGCC | 7 cut(s) | 32, 95, 218, 400, 727, 751, 1024 |
| BspCNI | CTCAG | 4 cut(s) | 503, 1411, 1526, 1581 |
| BspFNI | CGCG | 3 cut(s) | 72, 876, 1618 |
| BspHI | TCATGA | 1 cut(s) | 1201 |
| BspLI | GGNNCC | 2 cut(s) | 941, 1043 |
| BspMAI | CTGCAG | 2 cut(s) | 394, 1279 |
| BspMI | ACCTGC | 2 cut(s) | 457, 1282 |
| BspPI | GGATC | 4 cut(s) | 129, 220, 513, 1363 |
| BsrBI | CCGCTC | 1 cut(s) | 591 |
| BsrFI | RCCGGY | 1 cut(s) | 66 |
| BsrGI | TGTACA | 1 cut(s) | 1171 |
| BsrI | ACTGG | 8 cut(s) | 238, 290, 384, 707, 1291, 1435, 1460, 1667 |
| BssAI | RCCGGY | 1 cut(s) | 66 |
| BssECI | CCNNGG | 5 cut(s) | 96, 219, 935, 1161, 1211 |
| BssMI | GATC | 8 cut(s) | 121, 212, 518, 1234, 1355, 1409, 1690, 1701 |
| BssNAI | GTATAC | 1 cut(s) | 496 |
| BssNI | GRCGYC | 1 cut(s) | 1186 |
| BssSI | CACGAG | 1 cut(s) | 538 |
| BssT1I | CCWWGG | 2 cut(s) | 96, 219 |
| Bst1107I | GTATAC | 1 cut(s) | 496 |
| Bst2BI | CACGAG | 1 cut(s) | 538 |
| Bst2UI | CCWGG | 3 cut(s) | 748, 1050, 1162 |
| Bst4CI | ACNGT | 3 cut(s) | 673, 1116, 1673 |
| Bst6I | CTCTTC | 1 cut(s) | 131 |
| BstACI | GRCGYC | 1 cut(s) | 1186 |
| BstAUI | TGTACA | 1 cut(s) | 1171 |
| BstC8I | GCNNGC | 2 cut(s) | 1444, 1616 |
| BstDEI | CTNAG | 6 cut(s) | 352, 490, 1001, 1398, 1513, 1589 |
| BstDSI | CCRYGG | 1 cut(s) | 935 |
| BstF5I | GGATG | 4 cut(s) | 158, 911, 1412, 1684 |
| BstFNI | CGCG | 3 cut(s) | 72, 876, 1618 |
| BstHHI | GCGC | 2 cut(s) | 72, 897 |
| BstKTI | GATC | 8 cut(s) | 124, 215, 521, 1237, 1358, 1412, 1693, 1704 |
| BstMAI | GTCTC | 3 cut(s) | 559, 846, 1135 |
| BstMBI | GATC | 8 cut(s) | 121, 212, 518, 1234, 1355, 1409, 1690, 1701 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 67, 78, 406, 485, 1439, 1452 |
| BstNI | CCWGG | 3 cut(s) | 748, 1050, 1162 |
| BstSCI | CCNGG | 3 cut(s) | 746, 1048, 1160 |
| BstSFI | CTRYAG | 4 cut(s) | 258, 390, 600, 1275 |
| BstUI | CGCG | 3 cut(s) | 72, 876, 1618 |
| BstV1I | GCAGC | 6 cut(s) | 73, 404, 1042, 1078, 1395, 1653 |
| BstV2I | GAAGAC | 5 cut(s) | 165, 1117, 1147, 1265, 1650 |
| BstX2I | RGATCY | 2 cut(s) | 121, 518 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1496 |
| BstYI | RGATCY | 2 cut(s) | 121, 518 |
| BstZ17I | GTATAC | 1 cut(s) | 496 |
| BsuRI | GGCC | 7 cut(s) | 32, 95, 218, 400, 727, 751, 1024 |
| BtgI | CCRYGG | 1 cut(s) | 935 |
| BtgZI | GCGATG | 1 cut(s) | 618 |
| BtrI | CACGTC | 1 cut(s) | 1169 |
| BtsCI | GGATG | 4 cut(s) | 158, 911, 1412, 1684 |
| BtsIMutI | CAGTG | 3 cut(s) | 714, 1284, 1678 |
| BveI | ACCTGC | 2 cut(s) | 457, 1282 |
| Cac8I | GCNNGC | 2 cut(s) | 1444, 1616 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1055, 1466 |
| CciI | TCATGA | 1 cut(s) | 1201 |
| CfoI | GCGC | 2 cut(s) | 72, 897 |
| Cfr10I | RCCGGY | 1 cut(s) | 66 |
| Cfr13I | GGNCC | 4 cut(s) | 726, 940, 1041, 1697 |
| CseI | GACGC | 1 cut(s) | 1194 |
| Csp6I | GTAC | 2 cut(s) | 669, 1172 |
| CviAII | CATG | 3 cut(s) | 779, 1202, 1324 |
| CviQI | GTAC | 2 cut(s) | 669, 1172 |
| DdeI | CTNAG | 6 cut(s) | 352, 490, 1001, 1398, 1513, 1589 |
| DpnI | GATC | 8 cut(s) | 123, 214, 520, 1236, 1357, 1411, 1692, 1703 |
| DpnII | GATC | 8 cut(s) | 121, 212, 518, 1234, 1355, 1409, 1690, 1701 |
| DraIII | CACNNNGTG | 1 cut(s) | 1675 |
| DriI | GACNNNNNGTC | 1 cut(s) | 250 |
| EaeI | YGGCCR | 3 cut(s) | 30, 93, 216 |
| Eam1104I | CTCTTC | 1 cut(s) | 131 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 250 |
| EarI | CTCTTC | 1 cut(s) | 131 |
| EciI | GGCGGA | 1 cut(s) | 282 |
| Ecl136II | GAGCTC | 2 cut(s) | 543, 1614 |
| Eco130I | CCWWGG | 2 cut(s) | 96, 219 |
| Eco147I | AGGCCT | 1 cut(s) | 400 |
| Eco24I | GRGCYC | 3 cut(s) | 545, 1616, 1746 |
| Eco47I | GGWCC | 3 cut(s) | 940, 1041, 1697 |
| Eco53kI | GAGCTC | 2 cut(s) | 543, 1614 |
| Eco57I | CTGAAG | 2 cut(s) | 534, 849 |
| Eco88I | CYCGRG | 1 cut(s) | 843 |
| EcoICRI | GAGCTC | 2 cut(s) | 543, 1614 |
| EcoO109I | RGGNCCY | 2 cut(s) | 726, 1041 |
| EcoRII | CCWGG | 3 cut(s) | 746, 1048, 1160 |
| EcoT14I | CCWWGG | 2 cut(s) | 96, 219 |
| EcoT38I | GRGCYC | 3 cut(s) | 545, 1616, 1746 |
| ErhI | CCWWGG | 2 cut(s) | 96, 219 |
| FaeI | CATG | 3 cut(s) | 782, 1205, 1327 |
| FaqI | GGGAC | 4 cut(s) | 930, 1027, 1138, 1179 |
| FatI | CATG | 3 cut(s) | 778, 1201, 1323 |
| FauI | CCCGC | 1 cut(s) | 596 |
| FauNDI | CATATG | 1 cut(s) | 1338 |
| FblI | GTMKAC | 5 cut(s) | 379, 495, 599, 1220, 1563 |
| Fnu4HI | GCNGC | 8 cut(s) | 62, 93, 115, 393, 1056, 1092, 1384, 1667 |
| FokI | GGATG | 4 cut(s) | 145, 898, 1399, 1691 |
| FriOI | GRGCYC | 3 cut(s) | 545, 1616, 1746 |
| Fsp4HI | GCNGC | 8 cut(s) | 62, 93, 115, 393, 1056, 1092, 1384, 1667 |
| FspBI | CTAG | 4 cut(s) | 396, 453, 660, 930 |
| GlaI | GCGC | 2 cut(s) | 71, 896 |
| GluI | GCNGC | 8 cut(s) | 62, 93, 115, 393, 1056, 1092, 1384, 1667 |
| GsaI | CCCAGC | 1 cut(s) | 1091 |
| GsuI | CTGGAG | 1 cut(s) | 1443 |
| HaeIII | GGCC | 7 cut(s) | 32, 95, 218, 400, 727, 751, 1024 |
| HapII | CCGG | 3 cut(s) | 33, 67, 820 |
| HgaI | GACGC | 1 cut(s) | 1194 |
| HhaI | GCGC | 2 cut(s) | 72, 897 |
| Hin1I | GRCGYC | 1 cut(s) | 1186 |
| Hin1II | CATG | 3 cut(s) | 782, 1205, 1327 |
| Hin6I | GCGC | 2 cut(s) | 70, 895 |
| HinP1I | GCGC | 2 cut(s) | 70, 895 |
| HinfI | GANTC | 9 cut(s) | 23, 101, 170, 338, 469, 1143, 1151, 1506, 1716 |
| HpaII | CCGG | 3 cut(s) | 33, 67, 820 |
| HphI | GGTGA | 5 cut(s) | 199, 478, 852, 1113, 1501 |
| Hpy166II | GTNNAC | 9 cut(s) | 380, 496, 600, 785, 935, 1172, 1221, 1564, 1600 |
| Hpy8I | GTNNAC | 9 cut(s) | 380, 496, 600, 785, 935, 1172, 1221, 1564, 1600 |
| Hpy99I | CGWCG | 4 cut(s) | 110, 113, 170, 182 |
| HpyCH4III | ACNGT | 3 cut(s) | 673, 1116, 1673 |
| HpyCH4IV | ACGT | 2 cut(s) | 180, 1168 |
| HpyCH4V | TGCA | 7 cut(s) | 392, 712, 764, 1277, 1442, 1583, 1669 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 67, 78, 406, 485, 1439, 1452 |
| HpyF3I | CTNAG | 6 cut(s) | 352, 490, 1001, 1398, 1513, 1589 |
| HpySE526I | ACGT | 2 cut(s) | 180, 1168 |
| Hsp92I | GRCGYC | 1 cut(s) | 1186 |
| Hsp92II | CATG | 3 cut(s) | 782, 1205, 1327 |
| HspAI | GCGC | 2 cut(s) | 70, 895 |
| Kzo9I | GATC | 8 cut(s) | 121, 212, 518, 1234, 1355, 1409, 1690, 1701 |
| LmnI | GCTCC | 3 cut(s) | 361, 548, 929 |
| Lsp1109I | GCAGC | 6 cut(s) | 73, 404, 1042, 1078, 1395, 1653 |
| LweI | GCATC | 3 cut(s) | 857, 1615, 1732 |
| MaeI | CTAG | 4 cut(s) | 396, 453, 660, 930 |
| MaeII | ACGT | 2 cut(s) | 180, 1168 |
| MaeIII | GTNAC | 5 cut(s) | 154, 431, 466, 639, 1499 |
| MalI | GATC | 8 cut(s) | 123, 214, 520, 1236, 1357, 1411, 1692, 1703 |
| MbiI | CCGCTC | 1 cut(s) | 591 |
| MboI | GATC | 8 cut(s) | 121, 212, 518, 1234, 1355, 1409, 1690, 1701 |
| MflI | RGATCY | 2 cut(s) | 121, 518 |
| MhlI | GDGCHC | 4 cut(s) | 545, 1457, 1616, 1746 |
| MluCI | AATT | 4 cut(s) | 43, 191, 756, 1530 |
| MlyI | GAGTC | 5 cut(s) | 95, 179, 463, 1137, 1160 |
| MmeI | TCCRAC | 7 cut(s) | 129, 189, 190, 201, 537, 644, 1357 |
| MroXI | GAANNNNTTC | 1 cut(s) | 460 |
| MseI | TTAA | 4 cut(s) | 374, 534, 1476, 1533 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1100, 1179 |
| MspA1I | CMGCKG | 3 cut(s) | 869, 1091, 1569 |
| MspI | CCGG | 3 cut(s) | 33, 67, 820 |
| MspR9I | CCNGG | 3 cut(s) | 748, 1050, 1162 |
| Mva1269I | GAATGC | 1 cut(s) | 1404 |
| MvaI | CCWGG | 3 cut(s) | 748, 1050, 1162 |
| MvnI | CGCG | 3 cut(s) | 72, 876, 1618 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 67, 78, 406, 485, 1439, 1452 |
| NdeI | CATATG | 1 cut(s) | 1338 |
| NdeII | GATC | 8 cut(s) | 121, 212, 518, 1234, 1355, 1409, 1690, 1701 |
| NlaIII | CATG | 3 cut(s) | 782, 1205, 1327 |
| NlaIV | GGNNCC | 2 cut(s) | 941, 1043 |
| NmuCI | GTSAC | 2 cut(s) | 466, 639 |
| OliI | CACNNNNGTG | 1 cut(s) | 1100 |
| PaeR7I | CTCGAG | 1 cut(s) | 843 |
| PagI | TCATGA | 1 cut(s) | 1201 |
| PaqCI | CACCTGC | 1 cut(s) | 1282 |
| PceI | AGGCCT | 1 cut(s) | 400 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 174 |
| PctI | GAATGC | 1 cut(s) | 1404 |
| PdmI | GAANNNNTTC | 1 cut(s) | 460 |
| PfeI | GAWTC | 4 cut(s) | 23, 338, 1506, 1716 |
| PkrI | GCNGC | 8 cut(s) | 63, 94, 116, 394, 1057, 1093, 1385, 1668 |
| PleI | GAGTC | 5 cut(s) | 95, 178, 463, 1137, 1159 |
| PpsI | GAGTC | 5 cut(s) | 95, 178, 463, 1137, 1159 |
| PpuMI | RGGWCCY | 1 cut(s) | 1041 |
| PshBI | ATTAAT | 1 cut(s) | 1533 |
| Psp124BI | GAGCTC | 2 cut(s) | 545, 1616 |
| Psp5II | RGGWCCY | 1 cut(s) | 1041 |
| Psp6I | CCWGG | 3 cut(s) | 746, 1048, 1160 |
| PspFI | CCCAGC | 1 cut(s) | 1087 |
| PspGI | CCWGG | 3 cut(s) | 746, 1048, 1160 |
| PspN4I | GGNNCC | 2 cut(s) | 941, 1043 |
| PspPI | GGNCC | 4 cut(s) | 726, 940, 1041, 1697 |
| PspPPI | RGGWCCY | 1 cut(s) | 1041 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 370, 402 |
| PstI | CTGCAG | 2 cut(s) | 394, 1279 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1055, 1466 |
| PsuI | RGATCY | 2 cut(s) | 121, 518 |
| PvuII | CAGCTG | 2 cut(s) | 869, 1091 |
| RsaI | GTAC | 2 cut(s) | 670, 1173 |
| RsaNI | GTAC | 2 cut(s) | 669, 1172 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1100, 1179 |
| SacI | GAGCTC | 2 cut(s) | 545, 1616 |
| SaqAI | TTAA | 4 cut(s) | 374, 534, 1476, 1533 |
| SatI | GCNGC | 8 cut(s) | 62, 93, 115, 393, 1056, 1092, 1384, 1667 |
| Sau3AI | GATC | 8 cut(s) | 121, 212, 518, 1234, 1355, 1409, 1690, 1701 |
| Sau96I | GGNCC | 4 cut(s) | 726, 940, 1041, 1697 |
| SchI | GAGTC | 5 cut(s) | 95, 179, 463, 1137, 1160 |
| ScrFI | CCNGG | 3 cut(s) | 748, 1050, 1162 |
| SduI | GDGCHC | 4 cut(s) | 545, 1457, 1616, 1746 |
| SfaNI | GCATC | 3 cut(s) | 857, 1615, 1732 |
| SfcI | CTRYAG | 4 cut(s) | 258, 390, 600, 1275 |
| Sfr274I | CTCGAG | 1 cut(s) | 843 |
| SgrAI | CRCCGGYG | 1 cut(s) | 66 |
| SinI | GGWCC | 3 cut(s) | 940, 1041, 1697 |
| SlaI | CTCGAG | 1 cut(s) | 843 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1100, 1179 |
| SmlI | CTYRAG | 2 cut(s) | 843, 1132 |
| SmoI | CTYRAG | 2 cut(s) | 843, 1132 |
| Sse9I | AATT | 4 cut(s) | 43, 191, 756, 1530 |
| SseBI | AGGCCT | 1 cut(s) | 400 |
| SspMI | CTAG | 4 cut(s) | 396, 453, 660, 930 |
| SstI | GAGCTC | 2 cut(s) | 545, 1616 |
| StuI | AGGCCT | 1 cut(s) | 400 |
| StyD4I | CCNGG | 3 cut(s) | 746, 1048, 1160 |
| StyI | CCWWGG | 2 cut(s) | 96, 219 |
| TaaI | ACNGT | 3 cut(s) | 673, 1116, 1673 |
| TaiI | ACGT | 2 cut(s) | 183, 1171 |
| TaqI | TCGA | 8 cut(s) | 131, 524, 703, 844, 1320, 1408, 1689, 1719 |
| TaqII | GACCGA | 1 cut(s) | 1714 |
| TasI | AATT | 4 cut(s) | 43, 191, 756, 1530 |
| TatI | WGTACW | 1 cut(s) | 1171 |
| TauI | GCSGC | 2 cut(s) | 95, 117 |
| TfiI | GAWTC | 4 cut(s) | 23, 338, 1506, 1716 |
| Tru1I | TTAA | 4 cut(s) | 374, 534, 1476, 1533 |
| Tru9I | TTAA | 4 cut(s) | 374, 534, 1476, 1533 |
| TscAI | CASTG | 3 cut(s) | 714, 1291, 1678 |
| TseFI | GTSAC | 2 cut(s) | 466, 639 |
| TseI | GCWGC | 6 cut(s) | 61, 392, 1055, 1091, 1383, 1666 |
| Tsp45I | GTSAC | 2 cut(s) | 466, 639 |
| TspDTI | ATGAA | 3 cut(s) | 20, 1082, 1190 |
| TspGWI | ACGGA | 5 cut(s) | 585, 679, 932, 1494, 1518 |
| TspRI | CASTG | 3 cut(s) | 714, 1291, 1678 |
| VpaK11BI | GGWCC | 3 cut(s) | 940, 1041, 1697 |
| VspI | ATTAAT | 1 cut(s) | 1533 |
| XapI | RAATTY | 2 cut(s) | 43, 756 |
| XbaI | TCTAGA | 1 cut(s) | 659 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1493 |
| XhoI | CTCGAG | 1 cut(s) | 843 |
| XmiI | GTMKAC | 5 cut(s) | 379, 495, 599, 1220, 1563 |
| XmnI | GAANNNNTTC | 1 cut(s) | 460 |
| XspI | CTAG | 4 cut(s) | 396, 453, 660, 930 |