Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010297

Physical Location & Seq

Genomic Coordinates Reverse (-)

41516738 .. 41520793

Gene Structure 4056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025043

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGTCTCTGTTTCAGCTTTCAGTTTCACAATCTGAGAGTAACCATTCATCAAGACCAACTAGAAGCAGTTCAGTGACTCGCTCTTCAATCTCTTCATCACAGTATACCAACTATTCCTCAAACAGATCCTCCAATTTCCTTAACACGAGCTCAGCTTCAGTTTCGTCTTACAGTAGACCATCATCCCCCATTACCCGCTCCCCATCTACAGCAAGACCTTCCACTCCAACCTCTCGCCCATCACTATCAAGACCCTCAACTCCTTCTAGAAACCGTACTGTTCTGACTAGCTCTTCCATTGAGAGACCTCGGTCAGTGGCAAGCTCAAGACCATCCACTCCAAGTTCTAGGCCACAGATTCCTGCAAACTTGAGTTCACCAGCTGCTCGAACACCTTCTCGTCCATCTACCCCCACTCGTCGGCATTCGTTGCCTTCTTTGTCTCCAGCATCAAGTCCTTCACCTTCAGCTGGCCGTCTTTCAAATGGGCGCAATCCAGCACCAACATCCCGACCAAGCTCCCCTAGCCCACGTGTCCGTCCCCCACCACAGCCCATTGTTCCCCATGATTTTCCTCTTGATACACCGCCAAACCTTAGAACAACCTTACCAGACAGGCCAATTTCTGCTGGTAGGTCTCGGCCTGGTGCTGCTGTAGTAGTGAAGGGAAAATTAGAAACCCCAGCTGCCGTGGTTGTGCCAAGAAGACAGTCATCACCCATTGTTTCAAGGGGAAGACTCACAGAGGCCCCTGGAAGAAGCCGTGTACTTTCTAATGGGCACCATGATGTTCCTGAGCCTAGAAAGGCCCAACATCTCCCTGACCTGGGCATGCGGAAGCCTGTGAAGACTTCATCAACACCAGCTACGGAAAACAGTGGATTTGGGAGGAATATCTCGAAGAAATCTCTCGATATGGCAATCCGGCATATGGATATTAAGAATGGAACAGGAAACAGTCGCCAACTTTCAGGCAGCACCCTCTTCCCCCAAAGCATACGGTCTGGAACTCCCAAGACCCAGTCTGTTCGCACGTTGAGTTCATCAGCATCAGTGAACATGAATGGAGGCCTGCAATTCAGAAGTAATGGAGTTGTTTACGAGAATGGGAACAACATGAGTAGGCCTGTAGAAAATGGAACTGAAGCAAATGGGGGTGGACGGTATTCTGCAAAACTGACTGATGTGGACATCTATGAGAGCTCTCGCTATGATGCAATATTGCTCAAAGAAGACCTGAAGAATACAAACTGGCTACACAGTTTGGATGATAAATTGGATGAAGGACCCATCTTTGATAATGGATTTGAGCATCTGCCTGAACCTTTCGGCCTCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

447

Amino Acids

47.87

Weight (kDa)

11.39

Isoelectric Point (pI)

77.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08670
fragaria_vesca	FvH4_6g09520 FvH4_6g09520 FvH4_6g09520
malus_domestica	MD04G1176700.v1.1 MD12G1191700.v1.1
prunus_persica	Prupe.6G296400_v2.0.a1 Prupe.6G296400_v2.0.a1 Prupe.6G296400_v2.0.a1
pyrus_communis	pycom04g15610 pycom12g17880
rosa_chinensis	RchiOBHm_Chr3g0460111
rosa_laevigata	RLG00000025043
rosa_multiflora	Rmu_sc0000449.1_g000053
rosa_roxburghii	Rroxscaffold_6G00419830
rosa_rugosa	Rorug03G0039600
rosa_samantha	Rh3AG098000 Rh3BG101100 Rh3CG103200 Rh3DG102400
rosa_wichuraiana	Rw3G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1339
AccB1I	GGYRCC	1 cut(s)	780
AccBSI	CCGCTC	1 cut(s)	198
AccI	GTMKAC	2 cut(s)	104, 175
AciI	CCGC	3 cut(s)	196, 587, 835
AclWI	GGATC	1 cut(s)	120
AcoI	YGGCCR	1 cut(s)	472
AcuI	CTGAAG	4 cut(s)	141, 450, 1164, 1259
AcvI	CACGTG	1 cut(s)	533
AfaI	GTAC	2 cut(s)	277, 768
AfiI	CCNNNNNNNGG	5 cut(s)	420, 470, 826, 827, 931
AflIII	ACRYGT	1 cut(s)	532
AgsI	TTSAA	3 cut(s)	87, 483, 729
AjnI	CCWGG	3 cut(s)	643, 751, 825
Alw21I	GWGCWC	2 cut(s)	152, 1205
Alw26I	GTCTC	4 cut(s)	9, 298, 447, 642
AlwI	GGATC	1 cut(s)	120
AoxI	GGCC	9 cut(s)	350, 472, 617, 641, 747, 807, 1069, 1124, 1330
ApeKI	GCWGC	4 cut(s)	383, 650, 686, 975
Asp700I	GAANNNNTTC	2 cut(s)	67, 394
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	3 cut(s)	748, 808, 1286
AsuHPI	GGTGA	3 cut(s)	369, 453, 708
AvaII	GGWCC	1 cut(s)	1286
BaeGI	GKGCMC	1 cut(s)	783
BanI	GGYRCC	1 cut(s)	780
BanII	GRGCYC	2 cut(s)	152, 1205
BauI	CACGAG	1 cut(s)	145
BbrPI	CACGTG	1 cut(s)	533
BbsI	GAAGAC	4 cut(s)	712, 742, 854, 1239
Bbv12I	GWGCWC	2 cut(s)	152, 1205
BbvI	GCAGC	4 cut(s)	370, 637, 673, 987
BccI	CCATC	6 cut(s)	187, 211, 247, 340, 412, 1298
BceAI	ACGGC	3 cut(s)	459, 674, 747
BciT130I	CCWGG	3 cut(s)	645, 753, 827
BcoDI	GTCTC	4 cut(s)	9, 298, 447, 642
BfaI	CTAG	6 cut(s)	60, 267, 288, 348, 525, 801
BfmI	CTRYAG	3 cut(s)	207, 654, 1128
BisI	GCNGC	4 cut(s)	384, 651, 687, 976
BlpI	GCTNAGC	1 cut(s)	151
BlsI	GCNGC	4 cut(s)	385, 652, 688, 977
Bme1390I	CCNGG	3 cut(s)	645, 753, 827
Bme18I	GGWCC	1 cut(s)	1286
BmgT120I	GGNCC	3 cut(s)	748, 808, 1286
BmiI	GGNNCC	3 cut(s)	750, 782, 1288
BmrFI	CCNGG	3 cut(s)	645, 753, 827
BmrI	ACTGGG	1 cut(s)	1015
BmsI	GCATC	4 cut(s)	458, 1058, 1204, 1321
BmuI	ACTGGG	1 cut(s)	1015
BoxI	GACNNNNGTC	1 cut(s)	310
BpiI	GAAGAC	4 cut(s)	712, 742, 854, 1239
BpmI	CTGGAG	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	795
Bpu1102I	GCTNAGC	1 cut(s)	151
BpuEI	CTTGAG	2 cut(s)	310, 391
BsaAI	YACGTR	1 cut(s)	533
BsaI	GGTCTC	2 cut(s)	298, 642
BsaJI	CCNNGG	4 cut(s)	308, 690, 751, 826
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	5 cut(s)	420, 470, 826, 827, 931
Bse1I	ACTGG	2 cut(s)	1021, 1256
BseBI	CCWGG	3 cut(s)	645, 753, 827
BseDI	CCNNGG	4 cut(s)	308, 690, 751, 826
BseGI	GGATG	5 cut(s)	182, 332, 506, 1273, 1285
BseLI	CCNNNNNNNGG	5 cut(s)	420, 470, 826, 827, 931
BseMII	CTCAG	3 cut(s)	24, 165, 786
BseNI	ACTGG	2 cut(s)	1021, 1256
BseSI	GKGCMC	1 cut(s)	783
BseXI	GCAGC	4 cut(s)	370, 637, 673, 987
BseYI	CCCAGC	1 cut(s)	682
BshFI	GGCC	9 cut(s)	352, 474, 619, 643, 749, 809, 1071, 1126, 1332
BshNI	GGYRCC	1 cut(s)	780
BsiHKAI	GWGCWC	2 cut(s)	152, 1205
BsiSI	CCGG	1 cut(s)	925
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	5 cut(s)	420, 470, 826, 827, 931
BsmAI	GTCTC	4 cut(s)	9, 298, 447, 642
BsmFI	GGGAC	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	9 cut(s)	352, 474, 619, 643, 749, 809, 1071, 1126, 1332
Bso31I	GGTCTC	2 cut(s)	298, 642
Bsp1286I	GDGCHC	3 cut(s)	152, 783, 1205
Bsp143I	GATC	1 cut(s)	125
Bsp1720I	GCTNAGC	1 cut(s)	151
BspACI	CCGC	3 cut(s)	196, 587, 835
BspANI	GGCC	9 cut(s)	352, 474, 619, 643, 749, 809, 1071, 1126, 1332
BspCNI	CTCAG	3 cut(s)	25, 164, 787
BspLI	GGNNCC	3 cut(s)	750, 782, 1288
BspPI	GGATC	1 cut(s)	120
BspQI	GCTCTTC	2 cut(s)	88, 298
BspT107I	GGYRCC	1 cut(s)	780
BspTNI	GGTCTC	2 cut(s)	298, 642
BsrBI	CCGCTC	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	1021, 1256
BssECI	CCNNGG	4 cut(s)	308, 690, 751, 826
BssMI	GATC	1 cut(s)	125
BssNAI	GTATAC	1 cut(s)	105
BssSI	CACGAG	1 cut(s)	145
Bst1107I	GTATAC	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	145
Bst2UI	CCWGG	3 cut(s)	645, 753, 827
Bst6I	CTCTTC	4 cut(s)	88, 97, 298, 989
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstBAI	YACGTR	1 cut(s)	533
BstC8I	GCNNGC	4 cut(s)	322, 472, 833, 1073
BstDEI	CTNAG	4 cut(s)	33, 151, 596, 795
BstDSI	CCRYGG	1 cut(s)	690
BstF5I	GGATG	5 cut(s)	182, 332, 506, 1273, 1285
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	1 cut(s)	128
BstMAI	GTCTC	4 cut(s)	9, 298, 447, 642
BstMBI	GATC	1 cut(s)	125
BstMWI	GCNNNNNNNGC	2 cut(s)	430, 525
BstNI	CCWGG	3 cut(s)	645, 753, 827
BstNSI	RCATGY	1 cut(s)	835
BstPAI	GACNNNNGTC	1 cut(s)	310
BstSCI	CCNGG	3 cut(s)	643, 751, 825
BstSFI	CTRYAG	3 cut(s)	207, 654, 1128
BstSLI	GKGCMC	1 cut(s)	783
BstV1I	GCAGC	4 cut(s)	370, 637, 673, 987
BstV2I	GAAGAC	4 cut(s)	712, 742, 854, 1239
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BstZ17I	GTATAC	1 cut(s)	105
BsuRI	GGCC	9 cut(s)	352, 474, 619, 643, 749, 809, 1071, 1126, 1332
BtgI	CCRYGG	1 cut(s)	690
BtsCI	GGATG	5 cut(s)	182, 332, 506, 1273, 1285
BtsIMutI	CAGTG	4 cut(s)	78, 321, 883, 1059
Cac8I	GCNNGC	4 cut(s)	322, 472, 833, 1073
CfoI	GCGC	1 cut(s)	492
Cfr13I	GGNCC	3 cut(s)	748, 808, 1286
Csp6I	GTAC	2 cut(s)	276, 767
CviAII	CATG	5 cut(s)	566, 785, 832, 1060, 1117
CviQI	GTAC	2 cut(s)	276, 767
DdeI	CTNAG	4 cut(s)	33, 151, 596, 795
DpnI	GATC	1 cut(s)	127
DpnII	GATC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	472
Eam1104I	CTCTTC	4 cut(s)	88, 97, 298, 989
EarI	CTCTTC	4 cut(s)	88, 97, 298, 989
Ecl136II	GAGCTC	2 cut(s)	150, 1203
Eco147I	AGGCCT	2 cut(s)	1071, 1126
Eco24I	GRGCYC	2 cut(s)	152, 1205
Eco31I	GGTCTC	2 cut(s)	298, 642
Eco47I	GGWCC	1 cut(s)	1286
Eco53kI	GAGCTC	2 cut(s)	150, 1203
Eco57I	CTGAAG	4 cut(s)	141, 450, 1164, 1259
Eco72I	CACGTG	1 cut(s)	533
EcoICRI	GAGCTC	2 cut(s)	150, 1203
EcoO109I	RGGNCCY	2 cut(s)	748, 1286
EcoRII	CCWGG	3 cut(s)	643, 751, 825
EcoT38I	GRGCYC	2 cut(s)	152, 1205
FaeI	CATG	5 cut(s)	569, 788, 835, 1063, 1120
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	5 cut(s)	565, 784, 831, 1059, 1116
FauI	CCCGC	1 cut(s)	203
FauNDI	CATATG	1 cut(s)	930
FblI	GTMKAC	2 cut(s)	104, 175
Fnu4HI	GCNGC	4 cut(s)	384, 651, 687, 976
FokI	GGATG	5 cut(s)	169, 319, 493, 1280, 1292
FriOI	GRGCYC	2 cut(s)	152, 1205
Fsp4HI	GCNGC	4 cut(s)	384, 651, 687, 976
FspBI	CTAG	6 cut(s)	60, 267, 288, 348, 525, 801
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	4 cut(s)	384, 651, 687, 976
GsaI	CCCAGC	1 cut(s)	686
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	9 cut(s)	352, 474, 619, 643, 749, 809, 1071, 1126, 1332
HapII	CCGG	1 cut(s)	925
HhaI	GCGC	1 cut(s)	492
Hin1II	CATG	5 cut(s)	569, 788, 835, 1063, 1120
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HinfI	GANTC	3 cut(s)	76, 358, 738
HpaII	CCGG	1 cut(s)	925
HphI	GGTGA	3 cut(s)	369, 453, 708
Hpy166II	GTNNAC	8 cut(s)	105, 176, 377, 767, 1057, 1099, 1160, 1189
Hpy188I	TCNGA	3 cut(s)	34, 285, 1082
Hpy8I	GTNNAC	8 cut(s)	105, 176, 377, 767, 1057, 1099, 1160, 1189
Hpy99I	CGWCG	1 cut(s)	423
HpyAV	CCTTC	8 cut(s)	228, 273, 405, 444, 468, 474, 658, 1277
HpyCH4IV	ACGT	2 cut(s)	532, 1034
HpyCH4V	TGCA	4 cut(s)	365, 1075, 1172, 1217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	430, 525
HpyF3I	CTNAG	4 cut(s)	33, 151, 596, 795
HpySE526I	ACGT	2 cut(s)	532, 1034
Hsp92II	CATG	5 cut(s)	569, 788, 835, 1063, 1120
HspAI	GCGC	1 cut(s)	490
Kzo9I	GATC	1 cut(s)	125
LguI	GCTCTTC	2 cut(s)	88, 298
LmnI	GCTCC	2 cut(s)	203, 524
Lsp1109I	GCAGC	4 cut(s)	370, 637, 673, 987
LweI	GCATC	4 cut(s)	458, 1058, 1204, 1321
MaeI	CTAG	6 cut(s)	60, 267, 288, 348, 525, 801
MaeII	ACGT	2 cut(s)	532, 1034
MaeIII	GTNAC	2 cut(s)	38, 73
MalI	GATC	1 cut(s)	127
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	1 cut(s)	125
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	3 cut(s)	152, 783, 1205
MluCI	AATT	5 cut(s)	133, 621, 671, 1076, 1274
MlyI	GAGTC	2 cut(s)	70, 732
MmeI	TCCRAC	1 cut(s)	251
MroXI	GAANNNNTTC	2 cut(s)	67, 394
MseI	TTAA	2 cut(s)	141, 939
MslI	CAYNNNNRTG	1 cut(s)	786
MspA1I	CMGCKG	3 cut(s)	383, 470, 686
MspI	CCGG	1 cut(s)	925
MspR9I	CCNGG	3 cut(s)	645, 753, 827
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	3 cut(s)	645, 753, 827
MwoI	GCNNNNNNNGC	2 cut(s)	430, 525
NdeI	CATATG	1 cut(s)	930
NdeII	GATC	1 cut(s)	125
NlaIII	CATG	5 cut(s)	569, 788, 835, 1063, 1120
NlaIV	GGNNCC	3 cut(s)	750, 782, 1288
NmeAIII	GCCGAG	1 cut(s)	619
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	835
PaeI	GCATGC	1 cut(s)	835
PceI	AGGCCT	2 cut(s)	1071, 1126
PciSI	GCTCTTC	2 cut(s)	88, 298
PctI	GAATGC	1 cut(s)	424
PdmI	GAANNNNTTC	2 cut(s)	67, 394
PfeI	GAWTC	1 cut(s)	358
PflFI	GACNNNGTC	1 cut(s)	1021
PkrI	GCNGC	4 cut(s)	385, 652, 688, 977
PleI	GAGTC	2 cut(s)	70, 732
PmaCI	CACGTG	1 cut(s)	533
PmlI	CACGTG	1 cut(s)	533
PpsI	GAGTC	2 cut(s)	70, 732
Ppu21I	YACGTR	1 cut(s)	533
PpuMI	RGGWCCY	1 cut(s)	1286
PshAI	GACNNNNGTC	1 cut(s)	310
PsiI	TTATAA	1 cut(s)	1339
Psp124BI	GAGCTC	2 cut(s)	152, 1205
Psp5II	RGGWCCY	1 cut(s)	1286
Psp6I	CCWGG	3 cut(s)	643, 751, 825
PspCI	CACGTG	1 cut(s)	533
PspFI	CCCAGC	1 cut(s)	682
PspGI	CCWGG	3 cut(s)	643, 751, 825
PspN4I	GGNNCC	3 cut(s)	750, 782, 1288
PspPI	GGNCC	3 cut(s)	748, 808, 1286
PspPPI	RGGWCCY	1 cut(s)	1286
PsuI	RGATCY	1 cut(s)	125
PsyI	GACNNNGTC	1 cut(s)	1021
PvuII	CAGCTG	3 cut(s)	383, 470, 686
RsaI	GTAC	2 cut(s)	277, 768
RsaNI	GTAC	2 cut(s)	276, 767
RseI	CAYNNNNRTG	1 cut(s)	786
SacI	GAGCTC	2 cut(s)	152, 1205
SapI	GCTCTTC	2 cut(s)	88, 298
SaqAI	TTAA	2 cut(s)	141, 939
SatI	GCNGC	4 cut(s)	384, 651, 687, 976
Sau3AI	GATC	1 cut(s)	125
Sau96I	GGNCC	3 cut(s)	748, 808, 1286
SchI	GAGTC	2 cut(s)	70, 732
ScrFI	CCNGG	3 cut(s)	645, 753, 827
SduI	GDGCHC	3 cut(s)	152, 783, 1205
SfaNI	GCATC	4 cut(s)	458, 1058, 1204, 1321
SfcI	CTRYAG	3 cut(s)	207, 654, 1128
SinI	GGWCC	1 cut(s)	1286
SmiMI	CAYNNNNRTG	1 cut(s)	786
SmlI	CTYRAG	2 cut(s)	325, 370
SmoI	CTYRAG	2 cut(s)	325, 370
SphI	GCATGC	1 cut(s)	835
Sse9I	AATT	5 cut(s)	133, 621, 671, 1076, 1274
SseBI	AGGCCT	2 cut(s)	1071, 1126
SsiI	CCGC	3 cut(s)	196, 587, 835
SspI	AATATT	1 cut(s)	1221
SspMI	CTAG	6 cut(s)	60, 267, 288, 348, 525, 801
SstI	GAGCTC	2 cut(s)	152, 1205
StuI	AGGCCT	2 cut(s)	1071, 1126
StyD4I	CCNGG	3 cut(s)	643, 751, 825
TaiI	ACGT	2 cut(s)	535, 1037
TaqI	TCGA	3 cut(s)	388, 899, 912
TaqII	GACCGA	1 cut(s)	300
TasI	AATT	5 cut(s)	133, 621, 671, 1076, 1274
TatI	WGTACW	1 cut(s)	766
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	2 cut(s)	141, 939
Tru9I	TTAA	2 cut(s)	141, 939
TscAI	CASTG	4 cut(s)	78, 321, 883, 1059
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	4 cut(s)	383, 650, 686, 975
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	6 cut(s)	36, 84, 843, 1032, 1076, 1296
TspGWI	ACGGA	2 cut(s)	527, 884
TspRI	CASTG	4 cut(s)	78, 321, 883, 1059
Tth111I	GACNNNGTC	1 cut(s)	1021
VpaK11BI	GGWCC	1 cut(s)	1286
XbaI	TCTAGA	1 cut(s)	266
XceI	RCATGY	1 cut(s)	835
XmiI	GTMKAC	2 cut(s)	104, 175
XmnI	GAANNNNTTC	2 cut(s)	67, 394
XspI	CTAG	6 cut(s)	60, 267, 288, 348, 525, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.