Rh3AG098000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0010297
Physical Location & Seq
Forward (+)
8200329 .. 8204545
4217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG098000.1

Sequence Viewer

Length: 1521 bp
ATGAAGTTAAATTGGTATTCAATAAAACTACATATTTCTGACTTCTTCTTTTTTCAACCTTTTGTCATCAGGCTTCTCACTCCACCAGAAACTCCACTTTTCCCTTCATCAGATGGAAGTGAATGTCAACCAACCTTAGCTGCTGCAAGAAGCAGTGCTTTAAATAGATCAACTTCCTCAGCCAAGCCTTCAAGGCTTTCAGTTTCACAATCTGAGAGTAACCATTCATCAAGACCAGCTAGAAGCAGTTCAGTGACTCGCTCTTCAATCTCTTCATCACAGTATACCAACTATTCCTCAAACAGATCCTCCAATTTCCTTAACACGAGCTCAGCTTCAGTTTCGTCTTACAGTAGACCATCATCCCCCATTACCCGCTCCTCATCTACAGCAAGACCTTCCACTCCAACCTCTCGCCCATCACTATCAAGACCCTCAACTCCTTCTAGAACCCGTACTGTTCTGACTAGCTCTTCCATTGAGAGACCTCGGTCAGTGGCAAGCTCAAGACCATCCACTCCAAGTTCTAGGCCACAGATTCCTGCAAACTTGAGTTCACCAGCTGCTCGAACACCTTCTCGTCCATCTACCCCCACTCGTCGGCATTCGTTGCCTTCGTTGTCTCCAGCATCAAGTCCTTCACCTTCAGCTGGCCGTCTTTCAAATGGGCGCAATCCAGCACCAACATCCCGACCAAGCTCCCCTAGCCCACGTGTCCGTCCCCCACCACAGCCCATTGTTCCCCATGATTTTCCTCTTGATACACCACCAAACCTTAGAACAACCTTACCAGACAGGCCAATTTCTGCTGGGAGGTCTCGGCCCGGTGCTGCTGTAGTAGTGAAGGGAAAATTAGAAACCCCAGCTGCCGTGGTTGTGCCAAGAAGACAGTCATCACCCATTGTTTCAAGGGGAAGACTCACAGAGGCCCCTGGAAGAAGCCGTGTACTTTCTAATGGGCACCATGATGTTCCTGAGCCTAGAAAGGCCCAACATCTCCCTGACCTGGGCATGCGGAAGCCTGTGAAGACTTCATCAACACCAGCTACGGAAAACAGTGGATTTGGGAGGAATATCTCGAAGAAATCTCTCGATATGGCAATCCGGCATATGGATATTAAGAATGGAACAGGAAACAGTCGCCAACTTTCAGGCAGCACACTCTTCCCCCAAAGCATACGGTCTGGAACTCCAAAGACCCAGTCTGTTCGCACATTGAGTTCATCAGCATCAGTGAACATGAATGGAGGCCTGCAATCCAGAAGTAATGGAGTTGTTTATGAGAATGGGAACAACATGAGTAGGCCTGTAGAAAATGGAACTGAAGCAAATGGGGGTGGACGGTATTCTGCAAAACTGACTGATGTGGACATCTATGAGAGCTCTCGCTATGATGCAATATTGCTCAAAGAAGACCTGAAGAATACAAACTGGCTACACAGTTTGGATGATAAATTGGATGAAGGACCCATCTTTGATAATGGATTTGAGCATCTGCCTGAACCCTTCGGCCTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

506

Amino Acids

54.43

Weight (kDa)

11.24

Isoelectric Point (pI)

77.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1519
AccB1I GGYRCC 1 cut(s) 960
AccBSI CCGCTC 1 cut(s) 378
AccI GTMKAC 2 cut(s) 284, 355
AciI CCGC 2 cut(s) 376, 1015
AclWI GGATC 1 cut(s) 300
AcoI YGGCCR 1 cut(s) 652
AcuI CTGAAG 4 cut(s) 321, 630, 1344, 1439
AcvI CACGTG 1 cut(s) 713
AfaI GTAC 2 cut(s) 457, 948
AfiI CCNNNNNNNGG 5 cut(s) 600, 650, 1006, 1007, 1111
AflIII ACRYGT 1 cut(s) 712
AgsI TTSAA 6 cut(s) 21, 56, 192, 267, 663, 909
AjnI CCWGG 2 cut(s) 931, 1005
Alw21I GWGCWC 2 cut(s) 332, 1385
Alw26I GTCTC 3 cut(s) 478, 627, 822
AlwI GGATC 1 cut(s) 300
AoxI GGCC 9 cut(s) 530, 652, 797, 821, 927, 987, 1249, 1304, 1510
ApeKI GCWGC 6 cut(s) 140, 143, 563, 830, 866, 1155
ArsI GACNNNNNNTTYG 2 cut(s) 1187, 1219
Asp700I GAANNNNTTC 2 cut(s) 247, 574
AspLEI GCGC 1 cut(s) 672
AspS9I GGNCC 4 cut(s) 822, 928, 988, 1466
AsuC2I CCSGG 1 cut(s) 825
AsuHPI GGTGA 3 cut(s) 549, 633, 888
AvaII GGWCC 1 cut(s) 1466
BaeGI GKGCMC 1 cut(s) 963
BanI GGYRCC 1 cut(s) 960
BanII GRGCYC 2 cut(s) 332, 1385
BauI CACGAG 1 cut(s) 325
BbrPI CACGTG 1 cut(s) 713
BbsI GAAGAC 4 cut(s) 892, 922, 1034, 1419
Bbv12I GWGCWC 2 cut(s) 332, 1385
BbvCI CCTCAGC 1 cut(s) 178
BbvI GCAGC 6 cut(s) 127, 130, 550, 817, 853, 1167
BccI CCATC 6 cut(s) 107, 367, 427, 520, 592, 1478
BceAI ACGGC 3 cut(s) 639, 854, 927
BciT130I CCWGG 2 cut(s) 933, 1007
BcnI CCSGG 1 cut(s) 825
BcoDI GTCTC 3 cut(s) 478, 627, 822
BfaI CTAG 6 cut(s) 240, 447, 468, 528, 705, 981
BfmI CTRYAG 3 cut(s) 387, 834, 1308
BglI GCCNNNNNGGC 1 cut(s) 193
BisI GCNGC 6 cut(s) 141, 144, 564, 831, 867, 1156
BlpI GCTNAGC 1 cut(s) 331
BlsI GCNGC 6 cut(s) 142, 145, 565, 832, 868, 1157
Bme1390I CCNGG 3 cut(s) 825, 933, 1007
Bme18I GGWCC 1 cut(s) 1466
BmgT120I GGNCC 4 cut(s) 822, 928, 988, 1466
BmiI GGNNCC 3 cut(s) 930, 962, 1468
BmrFI CCNGG 3 cut(s) 825, 933, 1007
BmrI ACTGGG 1 cut(s) 1195
BmsI GCATC 4 cut(s) 638, 1238, 1384, 1501
BmuI ACTGGG 1 cut(s) 1195
BoxI GACNNNNGTC 1 cut(s) 490
BpiI GAAGAC 4 cut(s) 892, 922, 1034, 1419
BpmI CTGGAG 1 cut(s) 609
Bpu10I CCTNAGC 3 cut(s) 136, 178, 975
Bpu1102I GCTNAGC 1 cut(s) 331
BpuEI CTTGAG 2 cut(s) 490, 571
BpuMI CCSGG 1 cut(s) 825
BsaAI YACGTR 1 cut(s) 713
BsaI GGTCTC 2 cut(s) 478, 822
BsaJI CCNNGG 4 cut(s) 488, 870, 931, 1006
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 5 cut(s) 600, 650, 1006, 1007, 1111
Bse1I ACTGG 2 cut(s) 1201, 1436
BseBI CCWGG 2 cut(s) 933, 1007
BseDI CCNNGG 4 cut(s) 488, 870, 931, 1006
BseGI GGATG 5 cut(s) 362, 512, 686, 1453, 1465
BseLI CCNNNNNNNGG 5 cut(s) 600, 650, 1006, 1007, 1111
BseMII CTCAG 4 cut(s) 192, 204, 345, 966
BseNI ACTGG 2 cut(s) 1201, 1436
BseRI GAGGAG 1 cut(s) 370
BseSI GKGCMC 1 cut(s) 963
BseXI GCAGC 6 cut(s) 127, 130, 550, 817, 853, 1167
BseYI CCCAGC 2 cut(s) 809, 862
BshFI GGCC 9 cut(s) 532, 654, 799, 823, 929, 989, 1251, 1306, 1512
BshNI GGYRCC 1 cut(s) 960
BsiHKAI GWGCWC 2 cut(s) 332, 1385
BsiSI CCGG 2 cut(s) 825, 1105
BslFI GGGAC 1 cut(s) 705
BslI CCNNNNNNNGG 5 cut(s) 600, 650, 1006, 1007, 1111
BsmAI GTCTC 3 cut(s) 478, 627, 822
BsmFI GGGAC 1 cut(s) 705
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 9 cut(s) 532, 654, 799, 823, 929, 989, 1251, 1306, 1512
Bso31I GGTCTC 2 cut(s) 478, 822
Bsp1286I GDGCHC 3 cut(s) 332, 963, 1385
Bsp143I GATC 2 cut(s) 167, 305
Bsp1720I GCTNAGC 1 cut(s) 331
BspACI CCGC 2 cut(s) 376, 1015
BspANI GGCC 9 cut(s) 532, 654, 799, 823, 929, 989, 1251, 1306, 1512
BspCNI CTCAG 4 cut(s) 191, 205, 344, 967
BspLI GGNNCC 3 cut(s) 930, 962, 1468
BspPI GGATC 1 cut(s) 300
BspQI GCTCTTC 2 cut(s) 268, 478
BspT107I GGYRCC 1 cut(s) 960
BspTNI GGTCTC 2 cut(s) 478, 822
BsrBI CCGCTC 1 cut(s) 378
BsrI ACTGG 2 cut(s) 1201, 1436
BssECI CCNNGG 4 cut(s) 488, 870, 931, 1006
BssMI GATC 2 cut(s) 167, 305
BssNAI GTATAC 1 cut(s) 285
BssSI CACGAG 1 cut(s) 325
Bst1107I GTATAC 1 cut(s) 285
Bst2BI CACGAG 1 cut(s) 325
Bst2UI CCWGG 2 cut(s) 933, 1007
Bst4CI ACNGT 9 cut(s) 282, 353, 460, 891, 1058, 1139, 1182, 1344, 1442
Bst6I CTCTTC 4 cut(s) 268, 277, 478, 1169
BstAPI GCANNNNNTGC 1 cut(s) 610
BstBAI YACGTR 1 cut(s) 713
BstC8I GCNNGC 4 cut(s) 502, 652, 1013, 1253
BstDEI CTNAG 6 cut(s) 136, 178, 213, 331, 776, 975
BstDSI CCRYGG 1 cut(s) 870
BstF5I GGATG 5 cut(s) 362, 512, 686, 1453, 1465
BstHHI GCGC 1 cut(s) 672
BstKTI GATC 2 cut(s) 170, 308
BstMAI GTCTC 3 cut(s) 478, 627, 822
BstMBI GATC 2 cut(s) 167, 305
BstMWI GCNNNNNNNGC 3 cut(s) 193, 610, 705
BstNI CCWGG 2 cut(s) 933, 1007
BstNSI RCATGY 1 cut(s) 1015
BstPAI GACNNNNGTC 1 cut(s) 490
BstSCI CCNGG 3 cut(s) 823, 931, 1005
BstSFI CTRYAG 3 cut(s) 387, 834, 1308
BstSLI GKGCMC 1 cut(s) 963
BstV1I GCAGC 6 cut(s) 127, 130, 550, 817, 853, 1167
BstV2I GAAGAC 4 cut(s) 892, 922, 1034, 1419
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BstZ17I GTATAC 1 cut(s) 285
BsuRI GGCC 9 cut(s) 532, 654, 799, 823, 929, 989, 1251, 1306, 1512
BtgI CCRYGG 1 cut(s) 870
BtsCI GGATG 5 cut(s) 362, 512, 686, 1453, 1465
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 5 cut(s) 160, 258, 501, 1063, 1239
Cac8I GCNNGC 4 cut(s) 502, 652, 1013, 1253
CfoI GCGC 1 cut(s) 672
Cfr13I GGNCC 4 cut(s) 822, 928, 988, 1466
Csp6I GTAC 2 cut(s) 456, 947
CviAII CATG 5 cut(s) 746, 965, 1012, 1240, 1297
CviQI GTAC 2 cut(s) 456, 947
DdeI CTNAG 6 cut(s) 136, 178, 213, 331, 776, 975
DpnI GATC 2 cut(s) 169, 307
DpnII GATC 2 cut(s) 167, 305
DraI TTTAAA 1 cut(s) 162
EaeI YGGCCR 1 cut(s) 652
Eam1104I CTCTTC 4 cut(s) 268, 277, 478, 1169
EarI CTCTTC 4 cut(s) 268, 277, 478, 1169
Ecl136II GAGCTC 2 cut(s) 330, 1383
Eco147I AGGCCT 2 cut(s) 1251, 1306
Eco24I GRGCYC 2 cut(s) 332, 1385
Eco31I GGTCTC 2 cut(s) 478, 822
Eco47I GGWCC 1 cut(s) 1466
Eco53kI GAGCTC 2 cut(s) 330, 1383
Eco57I CTGAAG 4 cut(s) 321, 630, 1344, 1439
Eco72I CACGTG 1 cut(s) 713
EcoICRI GAGCTC 2 cut(s) 330, 1383
EcoO109I RGGNCCY 2 cut(s) 928, 1466
EcoRII CCWGG 2 cut(s) 931, 1005
EcoT38I GRGCYC 2 cut(s) 332, 1385
FaeI CATG 5 cut(s) 749, 968, 1015, 1243, 1300
FalI AAGNNNNNCTT 2 cut(s) 142, 174
FaqI GGGAC 1 cut(s) 705
FatI CATG 5 cut(s) 745, 964, 1011, 1239, 1296
FauI CCCGC 1 cut(s) 383
FauNDI CATATG 1 cut(s) 1110
FblI GTMKAC 2 cut(s) 284, 355
Fnu4HI GCNGC 6 cut(s) 141, 144, 564, 831, 867, 1156
FokI GGATG 5 cut(s) 349, 499, 673, 1460, 1472
FriOI GRGCYC 2 cut(s) 332, 1385
Fsp4HI GCNGC 6 cut(s) 141, 144, 564, 831, 867, 1156
FspBI CTAG 6 cut(s) 240, 447, 468, 528, 705, 981
GlaI GCGC 1 cut(s) 671
GluI GCNGC 6 cut(s) 141, 144, 564, 831, 867, 1156
GsaI CCCAGC 2 cut(s) 813, 866
GsuI CTGGAG 1 cut(s) 609
HaeIII GGCC 9 cut(s) 532, 654, 799, 823, 929, 989, 1251, 1306, 1512
HapII CCGG 2 cut(s) 825, 1105
HhaI GCGC 1 cut(s) 672
Hin1II CATG 5 cut(s) 749, 968, 1015, 1243, 1300
Hin6I GCGC 1 cut(s) 670
HinP1I GCGC 1 cut(s) 670
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HinfI GANTC 3 cut(s) 256, 538, 918
HpaII CCGG 2 cut(s) 825, 1105
HphI GGTGA 3 cut(s) 549, 633, 888
Hpy166II GTNNAC 8 cut(s) 128, 285, 356, 557, 947, 1237, 1340, 1369
Hpy188I TCNGA 4 cut(s) 40, 112, 214, 465
Hpy8I GTNNAC 8 cut(s) 128, 285, 356, 557, 947, 1237, 1340, 1369
Hpy99I CGWCG 1 cut(s) 603
HpyCH4III ACNGT 9 cut(s) 282, 353, 460, 891, 1058, 1139, 1182, 1344, 1442
HpyCH4IV ACGT 1 cut(s) 712
HpyCH4V TGCA 5 cut(s) 146, 545, 1255, 1352, 1397
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 610, 705
HpyF3I CTNAG 6 cut(s) 136, 178, 213, 331, 776, 975
HpySE526I ACGT 1 cut(s) 712
Hsp92II CATG 5 cut(s) 749, 968, 1015, 1243, 1300
HspAI GCGC 1 cut(s) 670
Kzo9I GATC 2 cut(s) 167, 305
LguI GCTCTTC 2 cut(s) 268, 478
LmnI GCTCC 2 cut(s) 383, 704
Lsp1109I GCAGC 6 cut(s) 127, 130, 550, 817, 853, 1167
LweI GCATC 4 cut(s) 638, 1238, 1384, 1501
MaeI CTAG 6 cut(s) 240, 447, 468, 528, 705, 981
MaeII ACGT 1 cut(s) 712
MaeIII GTNAC 2 cut(s) 218, 253
MalI GATC 2 cut(s) 169, 307
MbiI CCGCTC 1 cut(s) 378
MboI GATC 2 cut(s) 167, 305
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 3 cut(s) 332, 963, 1385
MluCI AATT 5 cut(s) 10, 313, 801, 851, 1454
MlyI GAGTC 2 cut(s) 250, 912
MmeI TCCRAC 1 cut(s) 431
MroXI GAANNNNTTC 2 cut(s) 247, 574
MseI TTAA 4 cut(s) 8, 161, 321, 1119
MslI CAYNNNNRTG 1 cut(s) 966
MspA1I CMGCKG 3 cut(s) 563, 650, 866
MspI CCGG 2 cut(s) 825, 1105
MspR9I CCNGG 3 cut(s) 825, 933, 1007
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 2 cut(s) 933, 1007
MwoI GCNNNNNNNGC 3 cut(s) 193, 610, 705
NciI CCSGG 1 cut(s) 825
NdeI CATATG 1 cut(s) 1110
NdeII GATC 2 cut(s) 167, 305
NlaIII CATG 5 cut(s) 749, 968, 1015, 1243, 1300
NlaIV GGNNCC 3 cut(s) 930, 962, 1468
NmeAIII GCCGAG 1 cut(s) 799
NmuCI GTSAC 1 cut(s) 253
NspI RCATGY 1 cut(s) 1015
PaeI GCATGC 1 cut(s) 1015
PceI AGGCCT 2 cut(s) 1251, 1306
PciSI GCTCTTC 2 cut(s) 268, 478
PcsI WCGNNNNNNNCGW 1 cut(s) 614
PctI GAATGC 1 cut(s) 604
PdmI GAANNNNTTC 2 cut(s) 247, 574
PfeI GAWTC 1 cut(s) 538
PflFI GACNNNGTC 1 cut(s) 1201
PkrI GCNGC 6 cut(s) 142, 145, 565, 832, 868, 1157
PleI GAGTC 2 cut(s) 250, 912
PmaCI CACGTG 1 cut(s) 713
PmlI CACGTG 1 cut(s) 713
PpsI GAGTC 2 cut(s) 250, 912
Ppu21I YACGTR 1 cut(s) 713
PpuMI RGGWCCY 1 cut(s) 1466
PshAI GACNNNNGTC 1 cut(s) 490
PsiI TTATAA 1 cut(s) 1519
Psp124BI GAGCTC 2 cut(s) 332, 1385
Psp5II RGGWCCY 1 cut(s) 1466
Psp6I CCWGG 2 cut(s) 931, 1005
PspCI CACGTG 1 cut(s) 713
PspFI CCCAGC 2 cut(s) 809, 862
PspGI CCWGG 2 cut(s) 931, 1005
PspN4I GGNNCC 3 cut(s) 930, 962, 1468
PspPI GGNCC 4 cut(s) 822, 928, 988, 1466
PspPPI RGGWCCY 1 cut(s) 1466
PsuI RGATCY 1 cut(s) 305
PsyI GACNNNGTC 1 cut(s) 1201
PvuII CAGCTG 3 cut(s) 563, 650, 866
RsaI GTAC 2 cut(s) 457, 948
RsaNI GTAC 2 cut(s) 456, 947
RseI CAYNNNNRTG 1 cut(s) 966
SacI GAGCTC 2 cut(s) 332, 1385
SapI GCTCTTC 2 cut(s) 268, 478
SaqAI TTAA 4 cut(s) 8, 161, 321, 1119
SatI GCNGC 6 cut(s) 141, 144, 564, 831, 867, 1156
Sau3AI GATC 2 cut(s) 167, 305
Sau96I GGNCC 4 cut(s) 822, 928, 988, 1466
SchI GAGTC 2 cut(s) 250, 912
ScrFI CCNGG 3 cut(s) 825, 933, 1007
SduI GDGCHC 3 cut(s) 332, 963, 1385
SfaNI GCATC 4 cut(s) 638, 1238, 1384, 1501
SfcI CTRYAG 3 cut(s) 387, 834, 1308
SinI GGWCC 1 cut(s) 1466
SmiMI CAYNNNNRTG 1 cut(s) 966
SmlI CTYRAG 2 cut(s) 505, 550
SmoI CTYRAG 2 cut(s) 505, 550
SphI GCATGC 1 cut(s) 1015
Sse9I AATT 5 cut(s) 10, 313, 801, 851, 1454
SseBI AGGCCT 2 cut(s) 1251, 1306
SsiI CCGC 2 cut(s) 376, 1015
SspI AATATT 1 cut(s) 1401
SspMI CTAG 6 cut(s) 240, 447, 468, 528, 705, 981
SstI GAGCTC 2 cut(s) 332, 1385
StuI AGGCCT 2 cut(s) 1251, 1306
StyD4I CCNGG 3 cut(s) 823, 931, 1005
TaaI ACNGT 9 cut(s) 282, 353, 460, 891, 1058, 1139, 1182, 1344, 1442
TaiI ACGT 1 cut(s) 715
TaqI TCGA 3 cut(s) 568, 1079, 1092
TaqII GACCGA 1 cut(s) 480
TasI AATT 5 cut(s) 10, 313, 801, 851, 1454
TatI WGTACW 1 cut(s) 946
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 4 cut(s) 8, 161, 321, 1119
Tru9I TTAA 4 cut(s) 8, 161, 321, 1119
TscAI CASTG 5 cut(s) 160, 258, 501, 1063, 1239
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 6 cut(s) 140, 143, 563, 830, 866, 1155
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 8 cut(s) 17, 96, 216, 264, 1023, 1212, 1256, 1476
TspGWI ACGGA 2 cut(s) 707, 1064
TspRI CASTG 5 cut(s) 160, 258, 501, 1063, 1239
Tth111I GACNNNGTC 1 cut(s) 1201
VpaK11BI GGWCC 1 cut(s) 1466
XbaI TCTAGA 1 cut(s) 446
XceI RCATGY 1 cut(s) 1015
XmiI GTMKAC 2 cut(s) 284, 355
XmnI GAANNNNTTC 2 cut(s) 247, 574
XspI CTAG 6 cut(s) 240, 447, 468, 528, 705, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.