Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003312

Physical Location & Seq

Genomic Coordinates Reverse (-)

21819425 .. 21820804

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g20240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGCAGTTCACTGTTGTCGATACCAGTTTGGTCCATGGAGCAAAATCACGTGGCATAGTGGAACTGAAATACTCACCAGTTGAACTCCAAAGTAATTCGGAACAACCCAATTGTTCAAGAGAAAATGAAGGGGACTCTTGTGAGAATAAATTAAATGGACATGGAAATGATACTGTTGAAATGCAATTGAACAGTAAAACCAATATGGCCAAGCACCTGAAGCGTAAGAGGTTCACAATTGTCGATACCAGTCTAGTTCATAGAGGAAAATCATCAACAGTTACAGAACTGAGATGCTCGCCAACTGTGTTTGAAAGTTTTTCTAAGTCAACTGGTCTTTTACGAGAAACTGAAGAAAATTCGTTTGCGGATTTACTGGGCAAGCATAAGCCTGATGCTGCTGATATTTCATTGGATGGTGAAGTGAATAATTTCAGCGACAACTGCCGTAGGGATATATCTGATATTGGTGGTACAAACCAAATGGAAGTAAAAAATAGCTCAGATTCTACAGAAAAAATGGAAGGCCACCCGAATAAAAAAAAGGGGATGTCTGATGACAAGAAGCCGAAGAGGACTACATTACATAAGTTTAGTCGGAAAGAGAAACATAGACATTCAAATTCTGTAGGTTCTCTCCCCAAACGCCGACGATTAGCTGCTTGTGCTAAGTCAGAAACAGGTTGCCTCGTCAACAGTAGCTCTCAAGGTTTGCAGTCAGAACAAGTGGGATCCCATGGCCCATTGAATTCTCTAGATGCAGGCGAGCTTGTTGTTTCTCTAGCGGGTCCTCTTGAAAGGGAGCCATCAATTGCTTCTCTTGCTGAAGGTAGTCCAGTAAAGGAGAGTAGTTCTGAAACTCATGGTGGGAATTGTTCAGGTGAGCGCATGTCGCATGAGAAGAATGAGAATCATCAAGACCAGGAATCATCCATCCTAAACTTACATCAGGATTTGATGGACAGTAGAAACAGTGAAAAAGTTGTTGTGGTCAACTTGGAAACAAATGTAGACAGCCTGTGCCTCCCATCAAGTGAAGCACATGTTGTAGACACTTTGAGTACCTTTAACATGATCTCCAGGAGGCAAAGCACAAGAAACCGACCGCTAACAGCTAGAGCATTGGAAGCTCTTGCAGACGGGTTATTAGGCATTAAAAAGAGAAAAAACAGCTCAGAAGATATCCTTGGGGAAAATCAAGTCTCAAGACCCTCCCGCAAGGCCCGGAAGAGAGTCAGGGTAACTTCAAGCCATGCTGATACTGTTAGTGGAATTGTGGCTTCAGAAGAAAGCGAGGTGAACGAAGGTTTGAATGTTAGCAAAGATACGGATAGCAAACCTCTTGATCAAACTGGAGAAAAGTGGCCAACTAGCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

460

Amino Acids

50.27

Weight (kDa)

6.78

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09040 AT1G09050 AT1G09050 AT1G55050 AT1G55050
fragaria_vesca	FvH4_6g06260 FvH4_6g06260 FvH4_6g06260 FvH4_6g06260 FvH4_6g06260 FvH4_6g06260 FvH4_6g06260 FvH4_6g06260 FvH4_6g06260 FvH4_6g06260
malus_domestica	MD04G1203200.v1.1 MD12G1216900.v1.1
prunus_persica	Prupe.6G323200_v2.0.a1 Prupe.6G323200_v2.0.a1 Prupe.6G323200_v2.0.a1 Prupe.6G323200_v2.0.a1 Prupe.6G323200_v2.0.a1
pyrus_communis	pycom04g17940 pycom12g20240
rosa_chinensis	RchiOBHm_Chr3g0455281
rosa_laevigata	RLG00000025372
rosa_multiflora	Rmu_sc0002169.1_g000039 Rmu_sc0002169.1_g000040 Rmu_sc0029206.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424400
rosa_rugosa	Rorug03G0005900
rosa_samantha	Rh3AG065700 Rh3BG067900 Rh3CG066300 Rh3DG067900
rosa_wichuraiana	Rw3G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	1011, 1050
AciI	CCGC	4 cut(s)	368, 785, 1106, 1216
AclWI	GGATC	2 cut(s)	726, 739
AcoI	YGGCCR	2 cut(s)	207, 1364
AcsI	RAATTY	3 cut(s)	358, 622, 748
AcuI	CTGAAG	4 cut(s)	239, 372, 846, 1266
AcvI	CACGTG	1 cut(s)	50
AfaI	GTAC	2 cut(s)	475, 1063
AflIII	ACRYGT	1 cut(s)	1042
AjnI	CCWGG	2 cut(s)	921, 1079
AjuI	GAANNNNNNNTTGG	2 cut(s)	1170, 1202
AluBI	AGCT	7 cut(s)	501, 659, 702, 769, 1115, 1130, 1173
AluI	AGCT	7 cut(s)	501, 659, 702, 769, 1115, 1130, 1173
Alw26I	GTCTC	1 cut(s)	1207
AlwI	GGATC	2 cut(s)	726, 739
AoxI	GGCC	5 cut(s)	207, 526, 739, 1221, 1364
ApeKI	GCWGC	2 cut(s)	398, 659
ApoI	RAATTY	3 cut(s)	358, 622, 748
Asp700I	GAANNNNTTC	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	888
AspS9I	GGNCC	4 cut(s)	31, 740, 788, 1222
AsuC2I	CCSGG	1 cut(s)	1225
AsuHPI	GGTGA	4 cut(s)	66, 431, 893, 1309
AvaII	GGWCC	2 cut(s)	31, 788
BalI	TGGCCA	2 cut(s)	209, 1366
BamHI	GGATCC	1 cut(s)	731
BbrPI	CACGTG	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	385, 646
BccI	CCATC	5 cut(s)	410, 814, 941, 952, 1036
BceAI	ACGGC	1 cut(s)	432
BciT130I	CCWGG	2 cut(s)	923, 1081
BclI	TGATCA	1 cut(s)	1345
BcnI	CCSGG	1 cut(s)	1225
BcoDI	GTCTC	1 cut(s)	1207
BfaI	CTAG	6 cut(s)	254, 755, 782, 1116, 1371, 1378
BfmI	CTRYAG	2 cut(s)	510, 627
BisI	GCNGC	2 cut(s)	399, 660
BlsI	GCNGC	2 cut(s)	400, 661
Bme1390I	CCNGG	3 cut(s)	923, 1081, 1225
Bme18I	GGWCC	2 cut(s)	31, 788
BmgT120I	GGNCC	4 cut(s)	31, 740, 788, 1222
BmiI	GGNNCC	3 cut(s)	733, 789, 804
BmrFI	CCNGG	3 cut(s)	923, 1081, 1225
BmrI	ACTGGG	1 cut(s)	386
BmsI	GCATC	3 cut(s)	284, 385, 748
BmuI	ACTGGG	1 cut(s)	386
BpmI	CTGGAG	2 cut(s)	1063, 1374
BpuEI	CTTGAG	2 cut(s)	690, 1189
BpuMI	CCSGG	1 cut(s)	1225
BsaAI	YACGTR	1 cut(s)	50
BsaJI	CCNNGG	3 cut(s)	34, 736, 1186
BsaXI	ACNNNNNCTCC	2 cut(s)	1061, 1091
Bse1I	ACTGG	7 cut(s)	24, 77, 249, 337, 381, 836, 1357
BseBI	CCWGG	2 cut(s)	923, 1081
BseDI	CCNNGG	3 cut(s)	34, 736, 1186
BseGI	GGATG	4 cut(s)	421, 555, 929, 933
BseMII	CTCAG	3 cut(s)	281, 516, 1188
BseNI	ACTGG	7 cut(s)	24, 77, 249, 337, 381, 836, 1357
BseXI	GCAGC	2 cut(s)	385, 646
Bsh1285I	CGRYCG	1 cut(s)	1106
BshFI	GGCC	5 cut(s)	209, 528, 741, 1223, 1366
BsiEI	CGRYCG	1 cut(s)	1106
BsiSI	CCGG	1 cut(s)	1225
BslFI	GGGAC	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	1207
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	5 cut(s)	209, 528, 741, 1223, 1366
Bsp143I	GATC	3 cut(s)	731, 1074, 1345
Bsp19I	CCATGG	2 cut(s)	34, 736
BspACI	CCGC	4 cut(s)	368, 785, 1106, 1216
BspANI	GGCC	5 cut(s)	209, 528, 741, 1223, 1366
BspCNI	CTCAG	3 cut(s)	282, 515, 1187
BspLI	GGNNCC	3 cut(s)	733, 789, 804
BspPI	GGATC	2 cut(s)	726, 739
BsrI	ACTGG	7 cut(s)	24, 77, 249, 337, 381, 836, 1357
BssECI	CCNNGG	3 cut(s)	34, 736, 1186
BssMI	GATC	3 cut(s)	731, 1074, 1345
BssT1I	CCWWGG	3 cut(s)	34, 736, 1186
Bst2UI	CCWGG	2 cut(s)	923, 1081
Bst4CI	ACNGT	9 cut(s)	13, 175, 194, 280, 307, 698, 965, 974, 1264
Bst6I	CTCTTC	2 cut(s)	566, 1223
BstBAI	YACGTR	1 cut(s)	50
BstC8I	GCNNGC	4 cut(s)	299, 383, 763, 767
BstDEI	CTNAG	5 cut(s)	290, 324, 502, 669, 1174
BstDSI	CCRYGG	2 cut(s)	34, 736
BstF5I	GGATG	4 cut(s)	421, 555, 929, 933
BstHHI	GCGC	1 cut(s)	888
BstKTI	GATC	3 cut(s)	734, 1077, 1348
BstMAI	GTCTC	1 cut(s)	1207
BstMBI	GATC	3 cut(s)	731, 1074, 1345
BstMCI	CGRYCG	1 cut(s)	1106
BstMWI	GCNNNNNNNGC	6 cut(s)	220, 444, 665, 821, 892, 1127
BstNI	CCWGG	2 cut(s)	923, 1081
BstNSI	RCATGY	2 cut(s)	892, 1046
BstSCI	CCNGG	3 cut(s)	921, 1079, 1223
BstSFI	CTRYAG	2 cut(s)	510, 627
BstV1I	GCAGC	2 cut(s)	385, 646
BstX2I	RGATCY	1 cut(s)	731
BstYI	RGATCY	1 cut(s)	731
BsuRI	GGCC	5 cut(s)	209, 528, 741, 1223, 1366
BtgI	CCRYGG	2 cut(s)	34, 736
BtsCI	GGATG	4 cut(s)	421, 555, 929, 933
BtsIMutI	CAGTG	2 cut(s)	9, 979
Cac8I	GCNNGC	4 cut(s)	299, 383, 763, 767
CfoI	GCGC	1 cut(s)	888
Cfr13I	GGNCC	4 cut(s)	31, 740, 788, 1222
Csp6I	GTAC	2 cut(s)	474, 1062
CviAII	CATG	9 cut(s)	35, 161, 737, 863, 889, 896, 1043, 1072, 1253
CviQI	GTAC	2 cut(s)	474, 1062
DdeI	CTNAG	5 cut(s)	290, 324, 502, 669, 1174
DpnI	GATC	3 cut(s)	733, 1076, 1347
DpnII	GATC	3 cut(s)	731, 1074, 1345
EaeI	YGGCCR	2 cut(s)	207, 1364
Eam1104I	CTCTTC	2 cut(s)	566, 1223
EarI	CTCTTC	2 cut(s)	566, 1223
Eco130I	CCWWGG	3 cut(s)	34, 736, 1186
Eco32I	GATATC	1 cut(s)	1183
Eco47I	GGWCC	2 cut(s)	31, 788
Eco57I	CTGAAG	4 cut(s)	239, 372, 846, 1266
Eco72I	CACGTG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	788
EcoRI	GAATTC	1 cut(s)	748
EcoRII	CCWGG	2 cut(s)	921, 1079
EcoRV	GATATC	1 cut(s)	1183
EcoT14I	CCWWGG	3 cut(s)	34, 736, 1186
ErhI	CCWWGG	3 cut(s)	34, 736, 1186
FaeI	CATG	9 cut(s)	38, 164, 740, 866, 892, 899, 1046, 1075, 1256
FalI	AAGNNNNNCTT	2 cut(s)	1170, 1202
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	9 cut(s)	34, 160, 736, 862, 888, 895, 1042, 1071, 1252
FauI	CCCGC	2 cut(s)	778, 1223
FbaI	TGATCA	1 cut(s)	1345
FblI	GTMKAC	2 cut(s)	1011, 1050
Fnu4HI	GCNGC	2 cut(s)	399, 660
FokI	GGATG	4 cut(s)	428, 562, 916, 920
Fsp4HI	GCNGC	2 cut(s)	399, 660
FspBI	CTAG	6 cut(s)	254, 755, 782, 1116, 1371, 1378
GlaI	GCGC	1 cut(s)	887
GluI	GCNGC	2 cut(s)	399, 660
GsuI	CTGGAG	2 cut(s)	1063, 1374
HaeIII	GGCC	5 cut(s)	209, 528, 741, 1223, 1366
HapII	CCGG	1 cut(s)	1225
HhaI	GCGC	1 cut(s)	888
Hin1II	CATG	9 cut(s)	38, 164, 740, 866, 892, 899, 1046, 1075, 1256
Hin6I	GCGC	1 cut(s)	886
HinP1I	GCGC	1 cut(s)	886
HincII	GTYRAC	3 cut(s)	330, 694, 994
HindII	GTYRAC	3 cut(s)	330, 694, 994
HinfI	GANTC	5 cut(s)	134, 506, 910, 926, 1233
HpaII	CCGG	1 cut(s)	1225
HphI	GGTGA	4 cut(s)	66, 431, 893, 1309
Hpy166II	GTNNAC	8 cut(s)	9, 234, 330, 694, 994, 1012, 1051, 1300
Hpy188III	TCNNGA	7 cut(s)	117, 755, 794, 917, 950, 1206, 1343
Hpy8I	GTNNAC	8 cut(s)	9, 234, 330, 694, 994, 1012, 1051, 1300
Hpy99I	CGWCG	1 cut(s)	654
HpyAV	CCTTC	4 cut(s)	122, 518, 821, 1298
HpyCH4III	ACNGT	9 cut(s)	13, 175, 194, 280, 307, 698, 965, 974, 1264
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	5 cut(s)	4, 184, 715, 761, 1136
HpyF10VI	GCNNNNNNNGC	6 cut(s)	220, 444, 665, 821, 892, 1127
HpyF3I	CTNAG	5 cut(s)	290, 324, 502, 669, 1174
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	9 cut(s)	38, 164, 740, 866, 892, 899, 1046, 1075, 1256
HspAI	GCGC	1 cut(s)	886
Ksp22I	TGATCA	1 cut(s)	1345
Kzo9I	GATC	3 cut(s)	731, 1074, 1345
LmnI	GCTCC	2 cut(s)	38, 802
Lsp1109I	GCAGC	2 cut(s)	385, 646
LweI	GCATC	3 cut(s)	284, 385, 748
MaeI	CTAG	6 cut(s)	254, 755, 782, 1116, 1371, 1378
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	2 cut(s)	280, 1240
MalI	GATC	3 cut(s)	733, 1076, 1347
MboI	GATC	3 cut(s)	731, 1074, 1345
MboII	GAAGA	6 cut(s)	365, 583, 913, 1190, 1240, 1298
MfeI	CAATTG	4 cut(s)	109, 185, 237, 810
MflI	RGATCY	1 cut(s)	731
MlsI	TGGCCA	2 cut(s)	209, 1366
MluNI	TGGCCA	2 cut(s)	209, 1366
MlyI	GAGTC	2 cut(s)	128, 1242
MmeI	TCCRAC	1 cut(s)	578
Mox20I	TGGCCA	2 cut(s)	209, 1366
MroXI	GAANNNNTTC	1 cut(s)	431
MscI	TGGCCA	2 cut(s)	209, 1366
MseI	TTAA	3 cut(s)	152, 1068, 1155
MslI	CAYNNNNRTG	1 cut(s)	165
Msp20I	TGGCCA	2 cut(s)	209, 1366
MspI	CCGG	1 cut(s)	1225
MspR9I	CCNGG	3 cut(s)	923, 1081, 1225
MunI	CAATTG	4 cut(s)	109, 185, 237, 810
MvaI	CCWGG	2 cut(s)	923, 1081
MwoI	GCNNNNNNNGC	6 cut(s)	220, 444, 665, 821, 892, 1127
NciI	CCSGG	1 cut(s)	1225
NcoI	CCATGG	2 cut(s)	34, 736
NdeII	GATC	3 cut(s)	731, 1074, 1345
NlaIII	CATG	9 cut(s)	38, 164, 740, 866, 892, 899, 1046, 1075, 1256
NlaIV	GGNNCC	3 cut(s)	733, 789, 804
NspI	RCATGY	2 cut(s)	892, 1046
PciI	ACATGT	1 cut(s)	1042
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	3 cut(s)	506, 910, 926
PfoI	TCCNGGA	1 cut(s)	1079
PkrI	GCNGC	2 cut(s)	400, 661
PleI	GAGTC	2 cut(s)	128, 1241
PmaCI	CACGTG	1 cut(s)	50
PmlI	CACGTG	1 cut(s)	50
PpsI	GAGTC	2 cut(s)	128, 1241
Ppu21I	YACGTR	1 cut(s)	50
PpuMI	RGGWCCY	1 cut(s)	788
PscI	ACATGT	1 cut(s)	1042
Psp5II	RGGWCCY	1 cut(s)	788
Psp6I	CCWGG	2 cut(s)	921, 1079
PspCI	CACGTG	1 cut(s)	50
PspGI	CCWGG	2 cut(s)	921, 1079
PspN4I	GGNNCC	3 cut(s)	733, 789, 804
PspPI	GGNCC	4 cut(s)	31, 740, 788, 1222
PspPPI	RGGWCCY	1 cut(s)	788
PsuI	RGATCY	1 cut(s)	731
RsaI	GTAC	2 cut(s)	475, 1063
RsaNI	GTAC	2 cut(s)	474, 1062
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	152, 1068, 1155
SatI	GCNGC	2 cut(s)	399, 660
Sau3AI	GATC	3 cut(s)	731, 1074, 1345
Sau96I	GGNCC	4 cut(s)	31, 740, 788, 1222
SchI	GAGTC	2 cut(s)	128, 1242
ScrFI	CCNGG	3 cut(s)	923, 1081, 1225
SfaNI	GCATC	3 cut(s)	284, 385, 748
SfcI	CTRYAG	2 cut(s)	510, 627
SinI	GGWCC	2 cut(s)	31, 788
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	2 cut(s)	705, 1204
SmoI	CTYRAG	2 cut(s)	705, 1204
SsiI	CCGC	4 cut(s)	368, 785, 1106, 1216
SspMI	CTAG	6 cut(s)	254, 755, 782, 1116, 1371, 1378
StyD4I	CCNGG	3 cut(s)	921, 1079, 1223
StyI	CCWWGG	3 cut(s)	34, 736, 1186
TaaI	ACNGT	9 cut(s)	13, 175, 194, 280, 307, 698, 965, 974, 1264
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	18, 243
TfiI	GAWTC	3 cut(s)	506, 910, 926
Tru1I	TTAA	3 cut(s)	152, 1068, 1155
Tru9I	TTAA	3 cut(s)	152, 1068, 1155
TscAI	CASTG	2 cut(s)	16, 979
TseI	GCWGC	2 cut(s)	398, 659
TspDTI	ATGAA	3 cut(s)	141, 248, 399
TspGWI	ACGGA	1 cut(s)	1343
TspRI	CASTG	2 cut(s)	16, 979
VpaK11BI	GGWCC	2 cut(s)	31, 788
XapI	RAATTY	3 cut(s)	358, 622, 748
XbaI	TCTAGA	1 cut(s)	754
XceI	RCATGY	2 cut(s)	892, 1046
XmiI	GTMKAC	2 cut(s)	1011, 1050
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	6 cut(s)	254, 755, 782, 1116, 1371, 1378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.