Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002169.1

Orthogroup ID

OG0003312

Physical Location & Seq

Genomic Coordinates Forward (+)

203974 .. 207082

Gene Structure 3109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002169.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

atggagatggaatcagctgagtcggatcttgtgggtaattcctccaaagaaacacctatcgaagatctgattaattcagatactcctacaagcaatgtttttggagatcaacatattattccccgagttggtggcaagtatcaggttgaaattccttttatgacggtggagacaatggaatctgagcggcttaagcttttgactaatcccgctgatacagaaattgccaatgattcccattcctttcttatgggattacccatcccaattgcatgggtcaaaggagtgaataacattgaagctgaagggttggactctccaactaaccctgatgacacacttaatgtaaagaagtctctggaagctagaaagaaaaaaaagattcataagagatcaaggaagaaaagttcagagctcaatgctgatcccttcgattttgggttgggtcagggagaagattcaagaccagcaagtttaagaacattgttgcagaaagaaaggcatttacatcagctgcttagaagcaaaagctgttctctagttcctgattcatctagggaaccctggagtgatgctgaagctgatagttttcttcttggcttatacatttttgggaagaatttcattcaggtgaagagattcatggagcacaagaccacaggagaaataatgtcattttactatggaatattttataggtctgaagaatactacagatggtcagattgtcagaaaggtagaaaaaggaaatgcattattggcgagaaaatttttacggggtggaggcaacaagaattgttttctcgtatgattcctcatgtccaagaggaatcacgaatcactttgttggagggctataggtcgtttgcagaaggaagaacttcgctagaagaatatgtctcctctttaaaatctacagttggcattcatgtacttgtggaagctgtgggaattgggaaaggggaagaagacctcacaggctttgccatagagcctggaaagaataatcaagagactcctatttctccagctccaagagtaccaaatggtaaagcttttgcttctcttacatttactgaaatagtgaagcttttgactggaggagttcggttgagcaaagctcgatgtaacgacattttttgggaggctgtgtggccccgtttgctggcaaatggatggcactctgagcaacccaaggaccgaggttatgtcagttccgaacattatttggtttttcttttgcctgggataaagaagtactcaagaagaaaattgacaaagggagatcactatctggattctgtgagtgatgttttgaacaaagtggcatctgaaccaaaactcattcagcttgaagctgaagaagatcctgttgggaatgaagaagttgggtgggctccagaggtgacatcagaccaggaagatctatcttatcttcagcgtccttgctacctcaaaccccgagtctctacaagcaatccaaaccatatgaagtttactgttgttgataccagtttggtccatggaggaaaatcacgtggcatagtggaactgagatacttaccagttgaagtgaagactaattcagtacaatccgattcctcaacggacagtgaaatgagcaatattacgagcactctggagttatctgtgtgctccccaagtattatgacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

558

Amino Acids

62.81

Weight (kDa)

5.91

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09040 AT1G09050 AT1G09050 AT1G55050 AT1G55050
fragaria_vesca	FvH4_6g06260 FvH4_6g06260 FvH4_6g06260 FvH4_6g06260 FvH4_6g06260 FvH4_6g06260 FvH4_6g06260 FvH4_6g06260 FvH4_6g06260 FvH4_6g06260
malus_domestica	MD04G1203200.v1.1 MD12G1216900.v1.1
prunus_persica	Prupe.6G323200_v2.0.a1 Prupe.6G323200_v2.0.a1 Prupe.6G323200_v2.0.a1 Prupe.6G323200_v2.0.a1 Prupe.6G323200_v2.0.a1
pyrus_communis	pycom04g17940 pycom12g20240
rosa_chinensis	RchiOBHm_Chr3g0455281
rosa_laevigata	RLG00000025372
rosa_multiflora	Rmu_sc0002169.1_g000039 Rmu_sc0002169.1_g000040 Rmu_sc0029206.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424400
rosa_rugosa	Rorug03G0005900
rosa_samantha	Rh3AG065700 Rh3BG067900 Rh3CG066300 Rh3DG067900
rosa_wichuraiana	Rw3G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	187
AciI	CCGC	2 cut(s)	187, 210
AclWI	GGATC	3 cut(s)	33, 419, 1361
AcsI	RAATTY	3 cut(s)	150, 619, 768
AcuI	CTGAAG	5 cut(s)	324, 597, 723, 1380, 1421
AcvI	CACGTG	1 cut(s)	1538
AfaI	GTAC	4 cut(s)	933, 1041, 1259, 1590
AfiI	CCNNNNNNNGG	2 cut(s)	128, 1165
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	6 cut(s)	149, 299, 462, 1318, 1355, 1571
AjnI	CCWGG	4 cut(s)	563, 994, 1243, 1416
AjuI	GAANNNNNNNTTGG	2 cut(s)	1356, 1388
AloI	GAACNNNNNNTCC	2 cut(s)	391, 423
Alw21I	GWGCWC	4 cut(s)	417, 651, 1637, 1658
Alw26I	GTCTC	5 cut(s)	164, 360, 904, 1007, 1471
AlwI	GGATC	3 cut(s)	33, 419, 1361
Ama87I	CYCGRG	2 cut(s)	123, 1461
AoxI	GGCC	1 cut(s)	1154
ApeKI	GCWGC	1 cut(s)	514
ApoI	RAATTY	3 cut(s)	150, 619, 768
ArsI	GACNNNNNNTTYG	2 cut(s)	1449, 1481
AseI	ATTAAT	1 cut(s)	72
Asp700I	GAANNNNTTC	3 cut(s)	620, 638, 880
AspS9I	GGNCC	3 cut(s)	1155, 1198, 1519
AsuHPI	GGTGA	2 cut(s)	643, 1417
AvaI	CYCGRG	2 cut(s)	123, 1461
AvaII	GGWCC	2 cut(s)	1198, 1519
BanII	GRGCYC	2 cut(s)	417, 1399
BbrPI	CACGTG	1 cut(s)	1538
BbsI	GAAGAC	2 cut(s)	975, 1583
Bbv12I	GWGCWC	4 cut(s)	417, 651, 1637, 1658
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	3 cut(s)	269, 711, 1170
BciT130I	CCWGG	4 cut(s)	565, 996, 1245, 1418
BcoDI	GTCTC	5 cut(s)	164, 360, 904, 1007, 1471
BfaI	CTAG	4 cut(s)	366, 539, 555, 887
BfmI	CTRYAG	3 cut(s)	712, 856, 915
BfrI	CTTAAG	1 cut(s)	191
BglII	AGATCT	2 cut(s)	64, 1423
BisI	GCNGC	2 cut(s)	188, 515
BlsI	GCNGC	2 cut(s)	189, 516
BmcAI	AGTACT	1 cut(s)	1259
Bme1390I	CCNGG	4 cut(s)	565, 996, 1245, 1418
Bme18I	GGWCC	2 cut(s)	1198, 1519
BmeT110I	CYCGRG	2 cut(s)	123, 1461
BmgT120I	GGNCC	3 cut(s)	1155, 1198, 1519
BmiI	GGNNCC	3 cut(s)	561, 1157, 1398
BmrFI	CCNGG	4 cut(s)	565, 996, 1245, 1418
BmsI	GCATC	2 cut(s)	562, 1337
BpiI	GAAGAC	2 cut(s)	975, 1583
BplI	GAGNNNNNCTC	2 cut(s)	1105, 1137
BpmI	CTGGAG	5 cut(s)	586, 1011, 1119, 1383, 1661
BpuEI	CTTGAG	1 cut(s)	1246
BsaAI	YACGTR	1 cut(s)	1538
BsaBI	GATNNNNATC	1 cut(s)	1290
BsaJI	CCNNGG	5 cut(s)	563, 1194, 1201, 1244, 1522
BsaXI	ACNNNNNCTCC	2 cut(s)	1136, 1166
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 1165
Bse1I	ACTGG	3 cut(s)	1102, 1512, 1565
Bse3DI	GCAATG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	1290
BseBI	CCWGG	4 cut(s)	565, 996, 1245, 1418
BseDI	CCNNGG	5 cut(s)	563, 1194, 1201, 1244, 1522
BseGI	GGATG	2 cut(s)	261, 1181
BseJI	GATNNNNATC	1 cut(s)	1290
BseLI	CCNNNNNNNGG	2 cut(s)	128, 1165
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	4 cut(s)	9, 174, 1176, 1544
BseNI	ACTGG	3 cut(s)	1102, 1512, 1565
BseRI	GAGGAG	2 cut(s)	892, 1116
BseXI	GCAGC	1 cut(s)	501
BshFI	GGCC	1 cut(s)	1156
BsiHKAI	GWGCWC	4 cut(s)	417, 651, 1637, 1658
BsiHKCI	CYCGRG	2 cut(s)	123, 1461
BslI	CCNNNNNNNGG	2 cut(s)	128, 1165
BsmAI	GTCTC	5 cut(s)	164, 360, 904, 1007, 1471
BsmI	GAATGC	1 cut(s)	924
BsnI	GGCC	1 cut(s)	1156
BsoBI	CYCGRG	2 cut(s)	123, 1461
Bsp1286I	GDGCHC	5 cut(s)	417, 651, 1399, 1637, 1658
Bsp143I	GATC	8 cut(s)	25, 64, 106, 392, 424, 1285, 1366, 1423
Bsp19I	CCATGG	1 cut(s)	1522
BspACI	CCGC	2 cut(s)	187, 210
BspANI	GGCC	1 cut(s)	1156
BspCNI	CTCAG	4 cut(s)	10, 175, 1177, 1545
BspLI	GGNNCC	3 cut(s)	561, 1157, 1398
BspPI	GGATC	3 cut(s)	33, 419, 1361
BspTI	CTTAAG	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	100
BsrI	ACTGG	3 cut(s)	1102, 1512, 1565
BssECI	CCNNGG	5 cut(s)	563, 1194, 1201, 1244, 1522
BssMI	GATC	8 cut(s)	25, 64, 106, 392, 424, 1285, 1366, 1423
BssT1I	CCWWGG	2 cut(s)	1194, 1522
Bst2UI	CCWGG	4 cut(s)	565, 996, 1245, 1418
Bst4CI	ACNGT	4 cut(s)	166, 919, 1501, 1613
Bst6I	CTCTTC	1 cut(s)	629
BstAFI	CTTAAG	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	1538
BstC8I	GCNNGC	1 cut(s)	1167
BstDEI	CTNAG	5 cut(s)	18, 183, 518, 1185, 1553
BstDSI	CCRYGG	1 cut(s)	1522
BstF5I	GGATG	2 cut(s)	261, 1181
BstKTI	GATC	8 cut(s)	28, 67, 109, 395, 427, 1288, 1369, 1426
BstMAI	GTCTC	5 cut(s)	164, 360, 904, 1007, 1471
BstMBI	GATC	8 cut(s)	25, 64, 106, 392, 424, 1285, 1366, 1423
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 759, 1162, 1186
BstNI	CCWGG	4 cut(s)	565, 996, 1245, 1418
BstSCI	CCNGG	4 cut(s)	563, 994, 1243, 1416
BstSFI	CTRYAG	3 cut(s)	712, 856, 915
BstV1I	GCAGC	1 cut(s)	501
BstV2I	GAAGAC	2 cut(s)	975, 1583
BstX2I	RGATCY	4 cut(s)	25, 64, 1366, 1423
BstXI	CCANNNNNNTGG	1 cut(s)	273
BstYI	RGATCY	4 cut(s)	25, 64, 1366, 1423
BsuRI	GGCC	1 cut(s)	1156
BtgI	CCRYGG	1 cut(s)	1522
BtsCI	GGATG	2 cut(s)	261, 1181
BtsIMutI	CAGTG	1 cut(s)	1618
Cac8I	GCNNGC	1 cut(s)	1167
Cfr13I	GGNCC	3 cut(s)	1155, 1198, 1519
CseI	GACGC	1 cut(s)	1430
Csp6I	GTAC	4 cut(s)	932, 1040, 1258, 1589
CviAII	CATG	5 cut(s)	273, 643, 818, 929, 1523
CviQI	GTAC	4 cut(s)	932, 1040, 1258, 1589
DdeI	CTNAG	5 cut(s)	18, 183, 518, 1185, 1553
DpnI	GATC	8 cut(s)	27, 66, 108, 394, 426, 1287, 1368, 1425
DpnII	GATC	8 cut(s)	25, 64, 106, 392, 424, 1285, 1366, 1423
DraI	TTTAAA	1 cut(s)	909
Eam1104I	CTCTTC	1 cut(s)	629
EarI	CTCTTC	1 cut(s)	629
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	2 cut(s)	1194, 1522
Eco24I	GRGCYC	2 cut(s)	417, 1399
Eco47I	GGWCC	2 cut(s)	1198, 1519
Eco53kI	GAGCTC	1 cut(s)	415
Eco57I	CTGAAG	5 cut(s)	324, 597, 723, 1380, 1421
Eco72I	CACGTG	1 cut(s)	1538
Eco88I	CYCGRG	2 cut(s)	123, 1461
EcoICRI	GAGCTC	1 cut(s)	415
EcoRII	CCWGG	4 cut(s)	563, 994, 1243, 1416
EcoT14I	CCWWGG	2 cut(s)	1194, 1522
EcoT22I	ATGCAT	1 cut(s)	755
EcoT38I	GRGCYC	2 cut(s)	417, 1399
ErhI	CCWWGG	2 cut(s)	1194, 1522
FaeI	CATG	5 cut(s)	276, 646, 821, 932, 1526
FatI	CATG	5 cut(s)	272, 642, 817, 928, 1522
FauI	CCCGC	1 cut(s)	217
FauNDI	CATATG	1 cut(s)	1488
Fnu4HI	GCNGC	2 cut(s)	188, 515
FokI	GGATG	2 cut(s)	248, 1188
FriOI	GRGCYC	2 cut(s)	417, 1399
Fsp4HI	GCNGC	2 cut(s)	188, 515
FspBI	CTAG	4 cut(s)	366, 539, 555, 887
GluI	GCNGC	2 cut(s)	188, 515
GsuI	CTGGAG	5 cut(s)	586, 1011, 1119, 1383, 1661
HaeIII	GGCC	1 cut(s)	1156
HgaI	GACGC	1 cut(s)	1430
Hin1II	CATG	5 cut(s)	276, 646, 821, 932, 1526
HindIII	AAGCTT	3 cut(s)	194, 1053, 1088
HphI	GGTGA	2 cut(s)	643, 1417
Hpy166II	GTNNAC	1 cut(s)	1497
Hpy188III	TCNNGA	9 cut(s)	359, 462, 545, 834, 1010, 1263, 1295, 1400, 1640
Hpy8I	GTNNAC	1 cut(s)	1497
HpyAV	CCTTC	3 cut(s)	299, 439, 866
HpyCH4III	ACNGT	4 cut(s)	166, 919, 1501, 1613
HpyCH4IV	ACGT	2 cut(s)	1537, 1673
HpyCH4V	TGCA	4 cut(s)	272, 490, 753, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 759, 1162, 1186
HpyF3I	CTNAG	5 cut(s)	18, 183, 518, 1185, 1553
HpySE526I	ACGT	2 cut(s)	1537, 1673
Hsp92II	CATG	5 cut(s)	276, 646, 821, 932, 1526
Kzo9I	GATC	8 cut(s)	25, 64, 106, 392, 424, 1285, 1366, 1423
LmnI	GCTCC	4 cut(s)	646, 1036, 1402, 1661
Lsp1109I	GCAGC	1 cut(s)	501
LweI	GCATC	2 cut(s)	562, 1337
MaeI	CTAG	4 cut(s)	366, 539, 555, 887
MaeII	ACGT	2 cut(s)	1537, 1673
MaeIII	GTNAC	2 cut(s)	1127, 1405
MalI	GATC	8 cut(s)	27, 66, 108, 394, 426, 1287, 1368, 1425
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	8 cut(s)	25, 64, 106, 392, 424, 1285, 1366, 1423
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	4 cut(s)	25, 64, 1366, 1423
MhlI	GDGCHC	5 cut(s)	417, 651, 1399, 1637, 1658
MlyI	GAGTC	4 cut(s)	29, 308, 1009, 1473
MmeI	TCCRAC	3 cut(s)	291, 344, 828
Mph1103I	ATGCAT	1 cut(s)	755
MroXI	GAANNNNTTC	3 cut(s)	620, 638, 880
MseI	TTAA	5 cut(s)	72, 192, 342, 476, 908
MslI	CAYNNNNRTG	1 cut(s)	629
MspA1I	CMGCKG	3 cut(s)	17, 212, 514
MspCI	CTTAAG	1 cut(s)	191
MspR9I	CCNGG	4 cut(s)	565, 996, 1245, 1418
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	924
MvaI	CCWGG	4 cut(s)	565, 996, 1245, 1418
MwoI	GCNNNNNNNGC	4 cut(s)	193, 759, 1162, 1186
NcoI	CCATGG	1 cut(s)	1522
NdeI	CATATG	1 cut(s)	1488
NdeII	GATC	8 cut(s)	25, 64, 106, 392, 424, 1285, 1366, 1423
NlaIII	CATG	5 cut(s)	276, 646, 821, 932, 1526
NlaIV	GGNNCC	3 cut(s)	561, 1157, 1398
NmuCI	GTSAC	1 cut(s)	1405
NsiI	ATGCAT	1 cut(s)	755
PctI	GAATGC	1 cut(s)	924
PdmI	GAANNNNTTC	3 cut(s)	620, 638, 880
PkrI	GCNGC	2 cut(s)	189, 516
PleI	GAGTC	4 cut(s)	28, 308, 1009, 1472
PmaCI	CACGTG	1 cut(s)	1538
PmlI	CACGTG	1 cut(s)	1538
PpsI	GAGTC	4 cut(s)	28, 308, 1009, 1472
Ppu21I	YACGTR	1 cut(s)	1538
PshBI	ATTAAT	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	417
Psp6I	CCWGG	4 cut(s)	563, 994, 1243, 1416
PspCI	CACGTG	1 cut(s)	1538
PspGI	CCWGG	4 cut(s)	563, 994, 1243, 1416
PspN4I	GGNNCC	3 cut(s)	561, 1157, 1398
PspPI	GGNCC	3 cut(s)	1155, 1198, 1519
PsuI	RGATCY	4 cut(s)	25, 64, 1366, 1423
PvuII	CAGCTG	2 cut(s)	17, 514
RsaI	GTAC	4 cut(s)	933, 1041, 1259, 1590
RsaNI	GTAC	4 cut(s)	932, 1040, 1258, 1589
RseI	CAYNNNNRTG	1 cut(s)	629
SacI	GAGCTC	1 cut(s)	417
SaqAI	TTAA	5 cut(s)	72, 192, 342, 476, 908
SatI	GCNGC	2 cut(s)	188, 515
Sau3AI	GATC	8 cut(s)	25, 64, 106, 392, 424, 1285, 1366, 1423
Sau96I	GGNCC	3 cut(s)	1155, 1198, 1519
ScaI	AGTACT	1 cut(s)	1259
SchI	GAGTC	4 cut(s)	29, 308, 1009, 1473
ScrFI	CCNGG	4 cut(s)	565, 996, 1245, 1418
SduI	GDGCHC	5 cut(s)	417, 651, 1399, 1637, 1658
SfaNI	GCATC	2 cut(s)	562, 1337
SfcI	CTRYAG	3 cut(s)	712, 856, 915
SinI	GGWCC	2 cut(s)	1198, 1519
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	2 cut(s)	191, 1261
SmoI	CTYRAG	2 cut(s)	191, 1261
SsiI	CCGC	2 cut(s)	187, 210
SspI	AATATT	2 cut(s)	690, 1627
SspMI	CTAG	4 cut(s)	366, 539, 555, 887
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	4 cut(s)	563, 994, 1243, 1416
StyI	CCWWGG	2 cut(s)	1194, 1522
TaaI	ACNGT	4 cut(s)	166, 919, 1501, 1613
TaiI	ACGT	2 cut(s)	1540, 1676
TaqI	TCGA	3 cut(s)	60, 432, 1123
TaqII	GACCGA	1 cut(s)	1215
TatI	WGTACW	3 cut(s)	931, 1257, 1588
TauI	GCSGC	1 cut(s)	190
Tru1I	TTAA	5 cut(s)	72, 192, 342, 476, 908
Tru9I	TTAA	5 cut(s)	72, 192, 342, 476, 908
TscAI	CASTG	1 cut(s)	1618
TseFI	GTSAC	1 cut(s)	1405
TseI	GCWGC	1 cut(s)	514
Tsp45I	GTSAC	1 cut(s)	1405
TspDTI	ATGAA	7 cut(s)	374, 540, 613, 631, 917, 1395, 1505
TspGWI	ACGGA	1 cut(s)	1622
TspRI	CASTG	1 cut(s)	1618
Vha464I	CTTAAG	1 cut(s)	191
VpaK11BI	GGWCC	2 cut(s)	1198, 1519
VspI	ATTAAT	1 cut(s)	72
XapI	RAATTY	3 cut(s)	150, 619, 768
XmnI	GAANNNNTTC	3 cut(s)	620, 638, 880
XspI	CTAG	4 cut(s)	366, 539, 555, 887
ZrmI	AGTACT	1 cut(s)	1259
Zsp2I	ATGCAT	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.