pycom12g24270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0017316
Physical Location & Seq
Reverse (-)
24617016 .. 24618033
1018 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 924 bp
ATGGACAAATTTGCAGGTAGCAATAGCAACACAGAGGCAGTTGAGCCAAGAAATGGGAGACCAAAATCTCCAAACCCAAAACCGAAAATCCCGGTGAGGAGAAGTGTCACCCCGAGTCAAAGACGAAGCATCTGCAGCAGCACAGGCACAATTGTGTCATCCAAGGCTCAAACAAAAAACAGAACGACACCAGTCGCAGTTTATCCTCGTCTGAACCAGAAACCAGCAAAGAATGTTAATATTATTAGGTCATCAGCATCCGTTGACACAAGAGCAAAAAGATCAGCAAATAATAACGTGGTCGGTGAAACATCAGCTCCAATAAATTTCTTATCCTCGTCGGGCATGGCCATGGGACTGGGAGGAGTACTGAAGATGGAATACTCAAAAACAAAGCCAACGACGTCAACAACTACTACTACATGTGTCTCTGCTGCCTCCCCTGATCATCTAATTGTAGCTGGATTTTCTAACGAGAAACCAGCTAGTGTGAGGACAGAACAACGCTCAACTTCTGCTACACGAGGAGGACGAGGTCGTACCAGTACGATGCCGACTCACCTGATCCCGACCAAAGCAGCTGCACCAGAAACTGCTTCAAAACCAATAAGGAGGCAGTCATGCTCACCAAGCGTCTGTAGGGGTCGGAAAGTACTGGAACGCACGATGCAGGTGCAGGAGATTACTACTACTACAATAGCAATTCACGGCAGTTTGAATAGTACTCCAAGTCTAAAAGGAAGAATTCAAACAGGAAACAACGGAACCCAAGTTCTGGGAAGCAGAATAGTGCAGAGAGTGATGAATGCTAGAAAAGCAGTTACTCATCATGAAGAAATAAATGATCATAAAAAACCCAGTGCGCGGTTTCTGATTAATGAAAGCTCTGGTCTTCGAAGAATGTACGGTACTCATGCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 map00562
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

32.99

Weight (kDa)

11.34

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017316)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00040
prunus_persica Prupe.6G365700_v2.0.a1
pyrus_communis pycom12g24270
rosa_laevigata RLG00000026006
rosa_multiflora Rmu_ssc0000473.1_g000006
rosa_roxburghii Rroxscaffold_6G00425540
rosa_rugosa Rorug02G0600400 Rorug02G0600500
rosa_samantha Rh3AG000600 Rh3BG000400 Rh3CG000400 Rh3DG000600
rosa_wichuraiana Rw3G000040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 661
AatII GACGTC 1 cut(s) 407
Acc36I ACCTGC 2 cut(s) 5, 661
AccB7I CCANNNNNTGG 2 cut(s) 53, 775
AccII CGCG 1 cut(s) 865
AciI CCGC 1 cut(s) 865
AclWI GGATC 1 cut(s) 559
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 3 cut(s) 8, 325, 744
AcuI CTGAAG 1 cut(s) 392
AcyI GRCGYC 1 cut(s) 404
AfaI GTAC 7 cut(s) 369, 541, 547, 654, 724, 905, 910
AfiI CCNNNNNNNGG 3 cut(s) 53, 775, 864
AflIII ACRYGT 1 cut(s) 422
AgsI TTSAA 3 cut(s) 600, 718, 749
AleI CACNNNNGTG 1 cut(s) 152
AloI GAACNNNNNNTCC 2 cut(s) 756, 788
AluBI AGCT 6 cut(s) 317, 461, 485, 581, 885, 921
AluI AGCT 6 cut(s) 317, 461, 485, 581, 885, 921
Alw26I GTCTC 2 cut(s) 52, 433
AlwI GGATC 1 cut(s) 559
AlwNI CAGNNNCTG 1 cut(s) 593
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 5 cut(s) 135, 138, 434, 578, 581
ApoI RAATTY 3 cut(s) 8, 325, 744
AseI ATTAAT 1 cut(s) 876
AspLEI GCGC 1 cut(s) 865
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 5 cut(s) 100, 106, 317, 551, 618
AsuII TTCGAA 1 cut(s) 895
AsuNHI GCTAGC 1 cut(s) 917
AvaI CYCGRG 1 cut(s) 112
BalI TGGCCA 1 cut(s) 350
BarI GAAGNNNNNNTAC 2 cut(s) 365, 397
BauI CACGAG 1 cut(s) 522
BbsI GAAGAC 1 cut(s) 884
BbvI GCAGC 5 cut(s) 147, 150, 421, 568, 590
BccI CCATC 1 cut(s) 370
BceAI ACGGC 1 cut(s) 724
BcgI CGANNNNNNTGC 4 cut(s) 114, 148, 655, 689
BclI TGATCA 2 cut(s) 445, 844
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 2 cut(s) 52, 433
BfaI CTAG 3 cut(s) 486, 810, 918
BfmI CTRYAG 2 cut(s) 133, 637
BfuAI ACCTGC 2 cut(s) 5, 661
BisI GCNGC 5 cut(s) 136, 139, 435, 579, 582
BlsI GCNGC 5 cut(s) 137, 140, 436, 580, 583
BmcAI AGTACT 3 cut(s) 369, 654, 724
Bme1390I CCNGG 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 766
BmrFI CCNGG 1 cut(s) 92
BmrI ACTGGG 2 cut(s) 368, 852
BmsI GCATC 4 cut(s) 138, 266, 540, 657
BmtI GCTAGC 1 cut(s) 921
BmuI ACTGGG 2 cut(s) 368, 852
BoxI GACNNNNGTC 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 884
Bpu14I TTCGAA 1 cut(s) 895
BpuMI CCSGG 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 404
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 2 cut(s) 162, 351
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 775, 864
Bse1I ACTGG 5 cut(s) 191, 363, 543, 660, 858
BseDI CCNNGG 2 cut(s) 162, 351
BseGI GGATG 2 cut(s) 158, 257
BseLI CCNNNNNNNGG 3 cut(s) 53, 775, 864
BseNI ACTGG 5 cut(s) 191, 363, 543, 660, 858
BseRI GAGGAG 3 cut(s) 112, 378, 540
BseXI GCAGC 5 cut(s) 147, 150, 421, 568, 590
BsgI GTGCAG 3 cut(s) 567, 695, 812
Bsh1236I CGCG 1 cut(s) 865
BshFI GGCC 1 cut(s) 350
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 3 cut(s) 53, 775, 864
BsmAI GTCTC 2 cut(s) 52, 433
BsmFI GGGAC 1 cut(s) 369
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 1 cut(s) 350
Bso31I GGTCTC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 112
Bsp119I TTCGAA 1 cut(s) 895
Bsp143I GATC 4 cut(s) 281, 445, 564, 844
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 1 cut(s) 865
BspANI GGCC 1 cut(s) 350
BspFNI CGCG 1 cut(s) 865
BspHI TCATGA 1 cut(s) 829
BspLI GGNNCC 1 cut(s) 766
BspMAI CTGCAG 1 cut(s) 137
BspMI ACCTGC 2 cut(s) 5, 661
BspOI GCTAGC 1 cut(s) 921
BspPI GGATC 1 cut(s) 559
BspT104I TTCGAA 1 cut(s) 895
BspTNI GGTCTC 1 cut(s) 52
BsrI ACTGG 5 cut(s) 191, 363, 543, 660, 858
BssECI CCNNGG 2 cut(s) 162, 351
BssMI GATC 4 cut(s) 281, 445, 564, 844
BssNI GRCGYC 1 cut(s) 404
BssSI CACGAG 1 cut(s) 522
BssT1I CCWWGG 2 cut(s) 162, 351
Bst2BI CACGAG 1 cut(s) 522
Bst4CI ACNGT 1 cut(s) 908
BstACI GRCGYC 1 cut(s) 404
BstBI TTCGAA 1 cut(s) 895
BstC8I GCNNGC 1 cut(s) 919
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 158, 257
BstFNI CGCG 1 cut(s) 865
BstHHI GCGC 1 cut(s) 865
BstKTI GATC 4 cut(s) 284, 448, 567, 847
BstMAI GTCTC 2 cut(s) 52, 433
BstMBI GATC 4 cut(s) 281, 445, 564, 844
BstMWI GCNNNNNNNGC 4 cut(s) 135, 144, 630, 815
BstNSI RCATGY 1 cut(s) 426
BstPAI GACNNNNGTC 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 2 cut(s) 133, 637
BstUI CGCG 1 cut(s) 865
BstV1I GCAGC 5 cut(s) 147, 150, 421, 568, 590
BstV2I GAAGAC 1 cut(s) 884
BstXI CCANNNNNNTGG 1 cut(s) 358
BsuRI GGCC 1 cut(s) 350
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 2 cut(s) 158, 257
BtsIMutI CAGTG 1 cut(s) 865
BveI ACCTGC 2 cut(s) 5, 661
Cac8I GCNNGC 1 cut(s) 919
CaiI CAGNNNCTG 1 cut(s) 593
CciI TCATGA 1 cut(s) 829
CfoI GCGC 1 cut(s) 865
CseI GACGC 1 cut(s) 622
Csp6I GTAC 7 cut(s) 368, 540, 546, 653, 723, 904, 909
CviAII CATG 6 cut(s) 346, 352, 423, 621, 830, 914
CviQI GTAC 7 cut(s) 368, 540, 546, 653, 723, 904, 909
DpnI GATC 4 cut(s) 283, 447, 566, 846
DpnII GATC 4 cut(s) 281, 445, 564, 844
EaeI YGGCCR 1 cut(s) 348
Eco130I CCWWGG 2 cut(s) 162, 351
Eco31I GGTCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 392
Eco88I CYCGRG 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 744
EcoT14I CCWWGG 2 cut(s) 162, 351
ErhI CCWWGG 2 cut(s) 162, 351
FaeI CATG 6 cut(s) 349, 355, 426, 624, 833, 917
FaiI YATR 7 cut(s) 347, 353, 424, 622, 831, 849, 915
FaqI GGGAC 1 cut(s) 369
FatI CATG 6 cut(s) 345, 351, 422, 620, 829, 913
FbaI TGATCA 2 cut(s) 445, 844
Fnu4HI GCNGC 5 cut(s) 136, 139, 435, 579, 582
FokI GGATG 2 cut(s) 145, 244
Fsp4HI GCNGC 5 cut(s) 136, 139, 435, 579, 582
FspBI CTAG 3 cut(s) 486, 810, 918
GlaI GCGC 1 cut(s) 864
GluI GCNGC 5 cut(s) 136, 139, 435, 579, 582
HaeIII GGCC 1 cut(s) 350
HapII CCGG 1 cut(s) 92
HgaI GACGC 1 cut(s) 622
HhaI GCGC 1 cut(s) 865
Hin1I GRCGYC 1 cut(s) 404
Hin1II CATG 6 cut(s) 349, 355, 426, 624, 833, 917
Hin6I GCGC 1 cut(s) 863
HinP1I GCGC 1 cut(s) 863
HincII GTYRAC 2 cut(s) 265, 408
HindII GTYRAC 2 cut(s) 265, 408
HinfI GANTC 2 cut(s) 115, 556
HpaII CCGG 1 cut(s) 92
HphI GGTGA 5 cut(s) 100, 106, 317, 551, 618
Hpy166II GTNNAC 2 cut(s) 265, 408
Hpy188I TCNGA 3 cut(s) 213, 648, 873
Hpy188III TCNNGA 2 cut(s) 568, 830
Hpy8I GTNNAC 2 cut(s) 265, 408
Hpy99I CGWCG 2 cut(s) 343, 406
HpyCH4III ACNGT 1 cut(s) 908
HpyCH4IV ACGT 2 cut(s) 297, 404
HpyCH4V TGCA 6 cut(s) 14, 135, 584, 670, 676, 793
HpyF10VI GCNNNNNNNGC 4 cut(s) 135, 144, 630, 815
HpySE526I ACGT 2 cut(s) 297, 404
Hsp92I GRCGYC 1 cut(s) 404
Hsp92II CATG 6 cut(s) 349, 355, 426, 624, 833, 917
HspAI GCGC 1 cut(s) 863
Ksp22I TGATCA 2 cut(s) 445, 844
Kzo9I GATC 4 cut(s) 281, 445, 564, 844
LmnI GCTCC 1 cut(s) 322
Lsp1109I GCAGC 5 cut(s) 147, 150, 421, 568, 590
LweI GCATC 4 cut(s) 138, 266, 540, 657
MaeI CTAG 3 cut(s) 486, 810, 918
MaeII ACGT 2 cut(s) 297, 404
MaeIII GTNAC 2 cut(s) 106, 820
MalI GATC 4 cut(s) 283, 447, 566, 846
MboI GATC 4 cut(s) 281, 445, 564, 844
MboII GAAGA 5 cut(s) 385, 753, 845, 884, 909
MfeI CAATTG 1 cut(s) 150
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 6 cut(s) 8, 150, 325, 453, 702, 744
MluNI TGGCCA 1 cut(s) 350
MlyI GAGTC 2 cut(s) 124, 550
MmeI TCCRAC 1 cut(s) 626
Mox20I TGGCCA 1 cut(s) 350
MscI TGGCCA 1 cut(s) 350
MseI TTAA 2 cut(s) 237, 876
MslI CAYNNNNRTG 2 cut(s) 152, 350
Msp20I TGGCCA 1 cut(s) 350
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 92
MunI CAATTG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 811
MvnI CGCG 1 cut(s) 865
MwoI GCNNNNNNNGC 4 cut(s) 135, 144, 630, 815
NciI CCSGG 1 cut(s) 92
NcoI CCATGG 1 cut(s) 351
NdeII GATC 4 cut(s) 281, 445, 564, 844
NheI GCTAGC 1 cut(s) 917
NlaIII CATG 6 cut(s) 349, 355, 426, 624, 833, 917
NlaIV GGNNCC 1 cut(s) 766
NmuCI GTSAC 1 cut(s) 106
NspI RCATGY 1 cut(s) 426
NspV TTCGAA 1 cut(s) 895
OliI CACNNNNGTG 1 cut(s) 152
PagI TCATGA 1 cut(s) 829
PaqCI CACCTGC 1 cut(s) 661
PciI ACATGT 1 cut(s) 422
PcsI WCGNNNNNNNCGW 1 cut(s) 529
PctI GAATGC 1 cut(s) 811
PflFI GACNNNGTC 1 cut(s) 534
PflMI CCANNNNNTGG 2 cut(s) 53, 775
PkrI GCNGC 5 cut(s) 137, 140, 436, 580, 583
PleI GAGTC 2 cut(s) 123, 550
PpsI GAGTC 2 cut(s) 123, 550
PscI ACATGT 1 cut(s) 422
PshAI GACNNNNGTC 1 cut(s) 191
PshBI ATTAAT 1 cut(s) 876
PspN4I GGNNCC 1 cut(s) 766
PstI CTGCAG 1 cut(s) 137
PstNI CAGNNNCTG 1 cut(s) 593
PsyI GACNNNGTC 1 cut(s) 534
PvuII CAGCTG 1 cut(s) 581
RsaI GTAC 7 cut(s) 369, 541, 547, 654, 724, 905, 910
RsaNI GTAC 7 cut(s) 368, 540, 546, 653, 723, 904, 909
RseI CAYNNNNRTG 2 cut(s) 152, 350
SaqAI TTAA 2 cut(s) 237, 876
SatI GCNGC 5 cut(s) 136, 139, 435, 579, 582
Sau3AI GATC 4 cut(s) 281, 445, 564, 844
ScaI AGTACT 3 cut(s) 369, 654, 724
SchI GAGTC 2 cut(s) 124, 550
ScrFI CCNGG 1 cut(s) 92
SfaNI GCATC 4 cut(s) 138, 266, 540, 657
SfcI CTRYAG 2 cut(s) 133, 637
SfuI TTCGAA 1 cut(s) 895
SmiMI CAYNNNNRTG 2 cut(s) 152, 350
Sse9I AATT 6 cut(s) 8, 150, 325, 453, 702, 744
SsiI CCGC 1 cut(s) 865
SspI AATATT 1 cut(s) 241
SspMI CTAG 3 cut(s) 486, 810, 918
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 2 cut(s) 162, 351
TaaI ACNGT 1 cut(s) 908
TaiI ACGT 2 cut(s) 300, 407
TaqI TCGA 1 cut(s) 895
TasI AATT 6 cut(s) 8, 150, 325, 453, 702, 744
TatI WGTACW 3 cut(s) 367, 652, 722
Tru1I TTAA 2 cut(s) 237, 876
Tru9I TTAA 2 cut(s) 237, 876
TscAI CASTG 1 cut(s) 865
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 5 cut(s) 135, 138, 434, 578, 581
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 3 cut(s) 818, 846, 894
TspGWI ACGGA 2 cut(s) 250, 777
TspRI CASTG 1 cut(s) 865
Tth111I GACNNNGTC 1 cut(s) 534
Van91I CCANNNNNTGG 2 cut(s) 53, 775
VspI ATTAAT 1 cut(s) 876
XapI RAATTY 3 cut(s) 8, 325, 744
XceI RCATGY 1 cut(s) 426
XspI CTAG 3 cut(s) 486, 810, 918
ZraI GACGTC 1 cut(s) 405
ZrmI AGTACT 3 cut(s) 369, 654, 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.