pycom13g04300

floral organ abscission

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
2899530 .. 2899841
312 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g04300.1

Sequence Viewer

Length: 312 bp
ATGGCTTCGAATCCCTCATCGAAATCGAAACACCTTTCGTCGTGCAAAACCGTATTTGTTGTTCTTCTCGTTCTCAATCTTCTTACGGGGTCCTGCACTGCAACAAGGCTAGCGAAGACTGTGGTGGTGAGGCTGGATGGGAAGGCTTTGATGAATCTGGATCACGCGAAAACGTTTAATCCCCGAAAACACGAGACGGGTTTTCGATACAGAGGTCAGATATTCAGCTACTTCCCCAAAGGGACTCCCATCCCTCCTTCTGGTCCTTCCAAAAGGCACAACTCAGCGGTGGACTCTACACCTAGAAATTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.28

Weight (kDa)

10.6

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018282)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68765 AT3G25655
prunus_persica Prupe.1G303500_v2.0.a1
pyrus_communis pycom13g04300 pycom16g04370
rosa_chinensis RchiOBHm_Chr4g0436131
rosa_multiflora Rmu_sc0006301.1_g000002
rosa_roxburghii Rroxscaffold_5G00377230
rosa_rugosa Rorug04G0292100
rosa_wichuraiana Rw4G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 167
AciI CCGC 1 cut(s) 287
AclI AACGTT 1 cut(s) 173
AclWI GGATC 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 260
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 1 cut(s) 168
AspS9I GGNCC 2 cut(s) 90, 263
AsuHPI GGTGA 1 cut(s) 139
AsuII TTCGAA 1 cut(s) 8
AsuNHI GCTAGC 1 cut(s) 109
AvaII GGWCC 2 cut(s) 90, 263
BaeI ACNNNNGTAYC 2 cut(s) 199, 232
BauI CACGAG 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 122
BccI CCATC 2 cut(s) 131, 257
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 2 cut(s) 110, 303
Bme18I GGWCC 2 cut(s) 90, 263
BmgT120I GGNCC 2 cut(s) 90, 263
BmiI GGNNCC 1 cut(s) 91
BmtI GCTAGC 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 122
Bpu14I TTCGAA 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 260
BseGI GGATG 2 cut(s) 142, 249
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 79
Bsh1236I CGCG 1 cut(s) 167
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 188
BsmBI CGTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 256
Bsp119I TTCGAA 1 cut(s) 8
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 1 cut(s) 287
BspCNI CTCAG 1 cut(s) 296
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 91
BspOI GCTAGC 1 cut(s) 113
BspPI GGATC 1 cut(s) 168
BspT104I TTCGAA 1 cut(s) 8
BssMI GATC 1 cut(s) 160
BssSI CACGAG 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 191
Bst4CI ACNGT 2 cut(s) 52, 121
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 283
BstF5I GGATG 2 cut(s) 142, 249
BstFNI CGCG 1 cut(s) 167
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 1 cut(s) 160
BstUI CGCG 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 122
BtsCI GGATG 2 cut(s) 142, 249
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 111
Cfr13I GGNCC 2 cut(s) 90, 263
CviJI RGCY 5 cut(s) 5, 109, 133, 146, 228
CviKI_1 RGCY 5 cut(s) 5, 109, 133, 146, 228
DdeI CTNAG 1 cut(s) 283
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 90, 263
EcoO109I RGGNCCY 1 cut(s) 90
Esp3I CGTCTC 1 cut(s) 188
FaqI GGGAC 1 cut(s) 256
FokI GGATG 2 cut(s) 149, 236
FspBI CTAG 2 cut(s) 110, 303
HinfI GANTC 4 cut(s) 10, 154, 244, 293
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 3 cut(s) 136, 267, 276
HpyCH4III ACNGT 2 cut(s) 52, 121
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 3 cut(s) 45, 96, 101
HpyF3I CTNAG 1 cut(s) 283
HpySE526I ACGT 1 cut(s) 173
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 4 cut(s) 106, 119, 143, 246
MaeI CTAG 2 cut(s) 110, 303
MaeII ACGT 1 cut(s) 173
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 3 cut(s) 56, 71, 127
MluCI AATT 1 cut(s) 307
MlyI GAGTC 2 cut(s) 238, 287
MnlI CCTC 4 cut(s) 25, 123, 206, 264
MseI TTAA 2 cut(s) 177, 310
MspA1I CMGCKG 1 cut(s) 287
MvnI CGCG 1 cut(s) 167
NdeII GATC 1 cut(s) 160
NheI GCTAGC 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 91
NspV TTCGAA 1 cut(s) 8
PfeI GAWTC 2 cut(s) 10, 154
PleI GAGTC 2 cut(s) 238, 287
PpsI GAGTC 2 cut(s) 238, 287
PpuMI RGGWCCY 1 cut(s) 90
Psp1406I AACGTT 1 cut(s) 173
Psp5II RGGWCCY 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 2 cut(s) 90, 263
PspPPI RGGWCCY 1 cut(s) 90
PsrI GAACNNNNNNTAC 2 cut(s) 45, 77
SaqAI TTAA 2 cut(s) 177, 310
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 2 cut(s) 90, 263
SchI GAGTC 2 cut(s) 238, 287
SetI ASST 5 cut(s) 36, 176, 217, 230, 304
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 2 cut(s) 90, 263
Sse9I AATT 1 cut(s) 307
SsiI CCGC 1 cut(s) 287
SspMI CTAG 2 cut(s) 110, 303
TaaI ACNGT 2 cut(s) 52, 121
TaiI ACGT 1 cut(s) 176
TaqI TCGA 4 cut(s) 8, 20, 26, 205
TasI AATT 1 cut(s) 307
TfiI GAWTC 2 cut(s) 10, 154
Tru1I TTAA 2 cut(s) 177, 310
Tru9I TTAA 2 cut(s) 177, 310
TscAI CASTG 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 167
TspRI CASTG 1 cut(s) 103
VpaK11BI GGWCC 2 cut(s) 90, 263
XspI CTAG 2 cut(s) 110, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.