Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006301.1

Orthogroup ID

OG0018282

Physical Location & Seq

Genomic Coordinates Reverse (-)

9514 .. 9813

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006301.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atggcttcttcttcttcttcttcttcttgttcgaaatcaaaatacctttcgattctctttctagttcttctattaataggttcgtgcgcggctacaaggcaaggcaagaccctggtggatcatgatcagagagtttacatgaacatggagcatacgaaagagctcaatctgaaaaagcaccagacggcttttcgatttcgtggagagatattcagcttcttccccaaagggtctcccgtccctccttctggtccttccaagaggcacaactctgtggtgaactctacccccaagaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009838 GO:0009908 GO:0010227 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.97

Weight (kDa)

10.09

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68765 AT3G25655
prunus_persica	Prupe.1G303500_v2.0.a1
pyrus_communis	pycom13g04300 pycom16g04370
rosa_chinensis	RchiOBHm_Chr4g0436131
rosa_multiflora	Rmu_sc0006301.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377230
rosa_rugosa	Rorug04G0292100
rosa_wichuraiana	Rw4G030260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	89
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	2 cut(s)	163, 216
AluI	AGCT	2 cut(s)	163, 216
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	126
AseI	ATTAAT	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	289
AsuII	TTCGAA	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	165
BceAI	ACGGC	1 cut(s)	201
BciT130I	CCWGG	1 cut(s)	113
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	113
Bpu14I	TTCGAA	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse8I	GATNNNNATC	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	111
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	224
Bso31I	GGTCTC	1 cut(s)	237
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	118, 124
BspACI	CCGC	1 cut(s)	89
BspFNI	CGCG	1 cut(s)	89
BspHI	TCATGA	1 cut(s)	121
BspPI	GGATC	1 cut(s)	126
BspT104I	TTCGAA	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	2 cut(s)	118, 124
Bst2UI	CCWGG	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	121, 127
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	2 cut(s)	118, 124
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	111
BstUI	CGCG	1 cut(s)	89
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	251
CviAII	CATG	3 cut(s)	122, 139, 145
CviJI	RGCY	5 cut(s)	5, 92, 163, 188, 216
CviKI_1	RGCY	5 cut(s)	5, 92, 163, 188, 216
DpnI	GATC	2 cut(s)	120, 126
DpnII	GATC	2 cut(s)	118, 124
Ecl136II	GAGCTC	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	163
EcoICRI	GAGCTC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	165
FaeI	CATG	3 cut(s)	125, 142, 148
FaiI	YATR	4 cut(s)	123, 140, 146, 153
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	3 cut(s)	121, 138, 144
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	90
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	90
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	125, 142, 148
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	1 cut(s)	52
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	136, 280
Hpy188I	TCNGA	2 cut(s)	129, 171
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	2 cut(s)	136, 280
HpyAV	CCTTC	2 cut(s)	255, 264
Hsp92II	CATG	3 cut(s)	125, 142, 148
HspAI	GCGC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	118, 124
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	4 cut(s)	98, 125, 194, 234
MaeI	CTAG	1 cut(s)	62
MalI	GATC	2 cut(s)	120, 126
MboI	GATC	2 cut(s)	118, 124
MboII	GAAGA	7 cut(s)	3, 6, 9, 12, 15, 59, 211
MhlI	GDGCHC	1 cut(s)	165
MnlI	CCTC	2 cut(s)	252, 255
MseI	TTAA	1 cut(s)	74
MslI	CAYNNNNRTG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	89
NdeII	GATC	2 cut(s)	118, 124
NlaIII	CATG	3 cut(s)	125, 142, 148
NspV	TTCGAA	1 cut(s)	32
PagI	TCATGA	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	91
PshBI	ATTAAT	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	118, 124
Sau96I	GGNCC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	4 cut(s)	48, 82, 165, 218
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	143
SsiI	CCGC	1 cut(s)	89
SspMI	CTAG	1 cut(s)	62
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	111
TaqI	TCGA	3 cut(s)	32, 50, 193
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	251
VspI	ATTAAT	1 cut(s)	74
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.