Rroxscaffold_5G00377230

floral organ abscission

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
57758516 .. 57758812
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00377230.1

Sequence Viewer

Length: 297 bp
ATGGCTTCTTCTTCTTCTTCTTCTTGTTCGAAATCAAAATACCTTTCGATTCTCTTTCTAGTTCTTCTATTAATAGGTTCGTGCGCGGCTACAAGGCAAGGCAAGACTCTGGTGGATCATGATCAGAGAGTTTACATGAACATGGAGCATACAAAAGAGCTCAATTTGAAAAAGCACCAGACGGCTTTTCGATTTCGTGGAGAGATATTCAGCTTCTTCCCCAAAGGGTCTCCCGTCCCTCCTTCTGGTCCTTCCAAGAGGCACAACTCTGTGGTGAACTCTACGCCTAAGAACTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.89

Weight (kDa)

10.09

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018282)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68765 AT3G25655
prunus_persica Prupe.1G303500_v2.0.a1
pyrus_communis pycom13g04300 pycom16g04370
rosa_chinensis RchiOBHm_Chr4g0436131
rosa_multiflora Rmu_sc0006301.1_g000002
rosa_roxburghii Rroxscaffold_5G00377230
rosa_rugosa Rorug04G0292100
rosa_wichuraiana Rw4G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 2 cut(s) 160, 213
AluI AGCT 2 cut(s) 160, 213
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 123
AseI ATTAAT 1 cut(s) 71
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 286
AsuII TTCGAA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 162
BceAI ACGGC 1 cut(s) 198
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
Bpu14I TTCGAA 1 cut(s) 29
BsaBI GATNNNNATC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse8I GATNNNNATC 1 cut(s) 120
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 162
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 221
Bso31I GGTCTC 1 cut(s) 234
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 2 cut(s) 115, 121
BspACI CCGC 1 cut(s) 86
BspFNI CGCG 1 cut(s) 86
BspHI TCATGA 1 cut(s) 118
BspPI GGATC 1 cut(s) 123
BspT104I TTCGAA 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 234
BssMI GATC 2 cut(s) 115, 121
BstBI TTCGAA 1 cut(s) 29
BstDEI CTNAG 1 cut(s) 288
BstFNI CGCG 1 cut(s) 86
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 2 cut(s) 118, 124
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 2 cut(s) 115, 121
BstUI CGCG 1 cut(s) 86
CciI TCATGA 1 cut(s) 118
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 248
CviAII CATG 3 cut(s) 119, 136, 142
CviJI RGCY 5 cut(s) 5, 89, 160, 185, 213
CviKI_1 RGCY 5 cut(s) 5, 89, 160, 185, 213
DdeI CTNAG 1 cut(s) 288
DpnI GATC 2 cut(s) 117, 123
DpnII GATC 2 cut(s) 115, 121
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 248
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 3 cut(s) 122, 139, 145
FaiI YATR 4 cut(s) 120, 137, 143, 150
FaqI GGGAC 1 cut(s) 221
FatI CATG 3 cut(s) 118, 135, 141
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 87
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 59
GlaI GCGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 87
HhaI GCGC 1 cut(s) 86
Hin1II CATG 3 cut(s) 122, 139, 145
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 2 cut(s) 49, 106
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 133, 277
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 2 cut(s) 133, 277
HpyAV CCTTC 2 cut(s) 252, 261
HpyF3I CTNAG 1 cut(s) 288
Hsp92II CATG 3 cut(s) 122, 139, 145
HspAI GCGC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 2 cut(s) 115, 121
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 3 cut(s) 95, 191, 231
MaeI CTAG 1 cut(s) 59
MalI GATC 2 cut(s) 117, 123
MboI GATC 2 cut(s) 115, 121
MboII GAAGA 6 cut(s) 3, 6, 9, 12, 56, 208
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 1 cut(s) 163
MlyI GAGTC 1 cut(s) 100
MnlI CCTC 2 cut(s) 249, 252
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 140
MvnI CGCG 1 cut(s) 86
NdeII GATC 2 cut(s) 115, 121
NlaIII CATG 3 cut(s) 122, 139, 145
NspV TTCGAA 1 cut(s) 29
PagI TCATGA 1 cut(s) 118
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PshBI ATTAAT 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 140
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 2 cut(s) 115, 121
Sau96I GGNCC 1 cut(s) 248
SchI GAGTC 1 cut(s) 100
SduI GDGCHC 1 cut(s) 162
SetI ASST 4 cut(s) 45, 79, 162, 215
SfuI TTCGAA 1 cut(s) 29
SinI GGWCC 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 1 cut(s) 163
SsiI CCGC 1 cut(s) 86
SspMI CTAG 1 cut(s) 59
SstI GAGCTC 1 cut(s) 162
TaqI TCGA 3 cut(s) 29, 47, 190
TasI AATT 1 cut(s) 163
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 248
VspI ATTAAT 1 cut(s) 71
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.