RchiOBHm_Chr4g0436131

floral organ abscission

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
59477454 .. 59478275
822 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40450

Sequence Viewer

Length: 306 bp
ATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTTCGAAATCAAAATACCTTTCGTTTCTCTTTCTAGTTCTTCTATTAATAGGTTCGTGCGCGGCTACAAGGCAAGGCAAGACTCTGGTGGATCATGATCAGAGAGTTTACATGAACATGGAGCATACGAAAGAGCTCAATCTGAAAAAGCACCAGACGGCTTTTCGATTTCGTGGAGAGATATTCAGCTTCTTCCCCAAAGGGTCTCCCGTCCCTCCTTCTGGTCCTTCCAAGAGGCACAACTCTGTGGTGAACTCTACGCCCAAGAACTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.18

Weight (kDa)

10.09

Isoelectric Point (pI)

56.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018282)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68765 AT3G25655
prunus_persica Prupe.1G303500_v2.0.a1
pyrus_communis pycom13g04300 pycom16g04370
rosa_chinensis RchiOBHm_Chr4g0436131
rosa_multiflora Rmu_sc0006301.1_g000002
rosa_roxburghii Rroxscaffold_5G00377230
rosa_rugosa Rorug04G0292100
rosa_wichuraiana Rw4G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 95
AciI CCGC 1 cut(s) 95
AclWI GGATC 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 254
AluBI AGCT 2 cut(s) 169, 222
AluI AGCT 2 cut(s) 169, 222
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 1 cut(s) 132
AseI ATTAAT 1 cut(s) 80
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 295
AsuII TTCGAA 1 cut(s) 38
AvaII GGWCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 171
BceAI ACGGC 1 cut(s) 207
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 1 cut(s) 68
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
Bpu14I TTCGAA 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse8I GATNNNNATC 1 cut(s) 129
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 254
Bsh1236I CGCG 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 171
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 230
Bso31I GGTCTC 1 cut(s) 243
Bsp119I TTCGAA 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 124, 130
BspACI CCGC 1 cut(s) 95
BspFNI CGCG 1 cut(s) 95
BspHI TCATGA 1 cut(s) 127
BspPI GGATC 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 243
BssMI GATC 2 cut(s) 124, 130
BstBI TTCGAA 1 cut(s) 38
BstFNI CGCG 1 cut(s) 95
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 2 cut(s) 127, 133
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 2 cut(s) 124, 130
BstUI CGCG 1 cut(s) 95
CciI TCATGA 1 cut(s) 127
CfoI GCGC 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 257
CviAII CATG 3 cut(s) 128, 145, 151
CviJI RGCY 5 cut(s) 5, 98, 169, 194, 222
CviKI_1 RGCY 5 cut(s) 5, 98, 169, 194, 222
DpnI GATC 2 cut(s) 126, 132
DpnII GATC 2 cut(s) 124, 130
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 171
Eco31I GGTCTC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 257
Eco53kI GAGCTC 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 171
FaeI CATG 3 cut(s) 131, 148, 154
FaiI YATR 4 cut(s) 129, 146, 152, 159
FaqI GGGAC 1 cut(s) 230
FatI CATG 3 cut(s) 127, 144, 150
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 68
GlaI GCGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 95
Hin1II CATG 3 cut(s) 131, 148, 154
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HinfI GANTC 1 cut(s) 115
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 2 cut(s) 142, 286
Hpy188I TCNGA 2 cut(s) 135, 177
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 2 cut(s) 142, 286
HpyAV CCTTC 2 cut(s) 261, 270
Hsp92II CATG 3 cut(s) 131, 148, 154
HspAI GCGC 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 2 cut(s) 124, 130
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 104, 200, 240
MaeI CTAG 1 cut(s) 68
MalI GATC 2 cut(s) 126, 132
MboI GATC 2 cut(s) 124, 130
MboII GAAGA 9 cut(s) 3, 6, 9, 12, 15, 18, 21, 65, 217
MhlI GDGCHC 1 cut(s) 171
MlyI GAGTC 1 cut(s) 109
MnlI CCTC 2 cut(s) 258, 261
MseI TTAA 1 cut(s) 80
MslI CAYNNNNRTG 1 cut(s) 149
MvnI CGCG 1 cut(s) 95
NdeII GATC 2 cut(s) 124, 130
NlaIII CATG 3 cut(s) 131, 148, 154
NspV TTCGAA 1 cut(s) 38
PagI TCATGA 1 cut(s) 127
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PshBI ATTAAT 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 149
SacI GAGCTC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 124, 130
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 1 cut(s) 109
SduI GDGCHC 1 cut(s) 171
SetI ASST 4 cut(s) 54, 88, 171, 224
SfuI TTCGAA 1 cut(s) 38
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 149
SsiI CCGC 1 cut(s) 95
SspMI CTAG 1 cut(s) 68
SstI GAGCTC 1 cut(s) 171
TaqI TCGA 2 cut(s) 38, 199
TauI GCSGC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 257
VspI ATTAAT 1 cut(s) 80
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.