Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0020448

Physical Location & Seq

Genomic Coordinates Forward (+)

6924226 .. 6925709

Gene Structure 1484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGACCAAGAATCCTTTGAGAATGGAGGTTGGGAATGTAAACAGCAAGCATCTTGTATTAGCGCTGAAGGTAGGGAATTGAGAATGTTTTTGGAATGTCTGATATTCAAATTCATGATTTGTGGTCCAGATTTCACTTTGTTTTACTTGTTACGTGTACAGGTAAAAAGCATCCTTGATCCTTGTGAGGACGAAAATGATGATATTCAAGATGATGAAGTGAGCTTAGGAGCTGATTCTATGCAAAGGGATGATTATTCGGGATCTGATTCTGACAGTGAGGTGAGGGTTCTGAGTCTATTGTATGGTTTGGCTTTGCACTGTAAACTTAAGAATGCACTTAAAGCTGCTGGTTTGCTTTATGTTCTCCTTTTTGTTTCAATTCTGAGGCCATATTTTATTGCTTTTGAGTCAAACTCTTTTTCCTCGATGCAGAAGTCAGATTATGAGTTCACTATGGTGAAAGAAGAAATGGATGCTCAAGTACCAGTTGCTGACAAAACTTTAAAGGTTAATGATCTCATGTACATAAAGGTGATTGCATTTCCTGTCTCGAAATTTTCTGTTCTCTGCAGTCTCCTCAAATATCTTGTCTCCCCAAGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

203

Amino Acids

22.88

Weight (kDa)

4.51

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020448)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g10350
rosa_laevigata	RLG00000006973
rosa_roxburghii	Rroxscaffold_5G00371690 Rroxscaffold_5G00372150
rosa_samantha	Rh4CG317200
rosa_wichuraiana	Rw4G025580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	173, 271
AcsI	RAATTY	2 cut(s)	110, 557
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	4 cut(s)	159, 486, 527, 604
AfeI	AGCGCT	1 cut(s)	64
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	109, 209, 381
AleI	CACNNNNGTG	1 cut(s)	458
AluBI	AGCT	3 cut(s)	225, 233, 347
AluI	AGCT	3 cut(s)	225, 233, 347
Alw26I	GTCTC	3 cut(s)	556, 581, 598
AlwI	GGATC	2 cut(s)	173, 271
AlwNI	CAGNNNCTG	1 cut(s)	494
Aor51HI	AGCGCT	1 cut(s)	64
AoxI	GGCC	1 cut(s)	389
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	2 cut(s)	110, 557
ArsI	GACNNNNNNTTYG	2 cut(s)	576, 608
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	2 cut(s)	4, 125
AsuHPI	GGTGA	3 cut(s)	295, 472, 547
AvaII	GGWCC	2 cut(s)	4, 125
BbvI	GCAGC	1 cut(s)	334
BcoDI	GTCTC	3 cut(s)	556, 581, 598
BfmI	CTRYAG	1 cut(s)	571
BfoI	RGCGCY	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme18I	GGWCC	2 cut(s)	4, 125
BmgT120I	GGNCC	2 cut(s)	4, 125
BmsI	GCATC	4 cut(s)	59, 180, 420, 466
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
Bpu10I	CCTNAGC	1 cut(s)	226
BpuEI	CTTGAG	1 cut(s)	465
BsaAI	YACGTR	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	488
BseGI	GGATG	3 cut(s)	171, 256, 481
BseMII	CTCAG	2 cut(s)	284, 377
BseNI	ACTGG	1 cut(s)	488
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	334
BshFI	GGCC	1 cut(s)	391
BsmAI	GTCTC	3 cut(s)	556, 581, 598
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	391
Bsp1407I	TGTACA	2 cut(s)	157, 525
Bsp143I	GATC	3 cut(s)	178, 263, 517
BspANI	GGCC	1 cut(s)	391
BspCNI	CTCAG	2 cut(s)	285, 378
BspHI	TCATGA	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	575
BspPI	GGATC	2 cut(s)	173, 271
BspTI	CTTAAG	1 cut(s)	329
BsrGI	TGTACA	2 cut(s)	157, 525
BsrI	ACTGG	1 cut(s)	488
BssMI	GATC	3 cut(s)	178, 263, 517
Bst4CI	ACNGT	2 cut(s)	278, 323
BstAFI	CTTAAG	1 cut(s)	329
BstAUI	TGTACA	2 cut(s)	157, 525
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	3 cut(s)	226, 293, 386
BstF5I	GGATG	3 cut(s)	171, 256, 481
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	3 cut(s)	181, 266, 520
BstMAI	GTCTC	3 cut(s)	556, 581, 598
BstMBI	GATC	3 cut(s)	178, 263, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	571
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	391
BtsCI	GGATG	3 cut(s)	171, 256, 481
BtsIMutI	CAGTG	2 cut(s)	283, 319
Cac8I	GCNNGC	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	494
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	4, 125
Csp6I	GTAC	4 cut(s)	158, 485, 526, 603
CviAII	CATG	2 cut(s)	115, 523
CviJI	RGCY	5 cut(s)	225, 233, 314, 347, 391
CviKI_1	RGCY	5 cut(s)	225, 233, 314, 347, 391
CviQI	GTAC	4 cut(s)	158, 485, 526, 603
DdeI	CTNAG	3 cut(s)	226, 293, 386
DpnI	GATC	3 cut(s)	180, 265, 519
DpnII	GATC	3 cut(s)	178, 263, 517
DraI	TTTAAA	1 cut(s)	507
Eco47I	GGWCC	2 cut(s)	4, 125
Eco47III	AGCGCT	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	87
FaeI	CATG	2 cut(s)	118, 526
FaiI	YATR	9 cut(s)	116, 242, 306, 363, 394, 447, 458, 524, 530
FatI	CATG	2 cut(s)	114, 522
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	3 cut(s)	158, 263, 488
Fsp4HI	GCNGC	1 cut(s)	348
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	391
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	118, 526
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HinfI	GANTC	5 cut(s)	11, 236, 269, 295, 410
HphI	GGTGA	3 cut(s)	295, 472, 547
Hpy166II	GTNNAC	4 cut(s)	41, 158, 326, 453
Hpy188I	TCNGA	6 cut(s)	102, 268, 274, 294, 387, 442
Hpy188III	TCNNGA	5 cut(s)	115, 128, 209, 261, 553
Hpy8I	GTNNAC	4 cut(s)	41, 158, 326, 453
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	2 cut(s)	278, 323
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	6 cut(s)	244, 319, 338, 433, 542, 573
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	3 cut(s)	226, 293, 386
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	118, 526
HspAI	GCGC	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	178, 263, 517
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	5 cut(s)	141, 146, 336, 501, 561
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	4 cut(s)	59, 180, 420, 466
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	150
MalI	GATC	3 cut(s)	180, 265, 519
MboI	GATC	3 cut(s)	178, 263, 517
MboII	GAAGA	1 cut(s)	479
MflI	RGATCY	1 cut(s)	263
MluCI	AATT	4 cut(s)	77, 110, 381, 557
MlyI	GAGTC	2 cut(s)	304, 419
MnlI	CCTC	7 cut(s)	20, 181, 274, 279, 381, 436, 590
MseI	TTAA	4 cut(s)	330, 342, 506, 513
MslI	CAYNNNNRTG	2 cut(s)	458, 533
MspCI	CTTAAG	1 cut(s)	329
Mva1269I	GAATGC	1 cut(s)	340
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	3 cut(s)	178, 263, 517
NlaIII	CATG	2 cut(s)	118, 526
OliI	CACNNNNGTG	1 cut(s)	458
PagI	TCATGA	1 cut(s)	114
PctI	GAATGC	1 cut(s)	340
PfeI	GAWTC	3 cut(s)	11, 236, 269
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	2 cut(s)	303, 418
PpsI	GAGTC	2 cut(s)	303, 418
Ppu21I	YACGTR	1 cut(s)	155
PspPI	GGNCC	2 cut(s)	4, 125
PstI	CTGCAG	1 cut(s)	575
PstNI	CAGNNNCTG	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	263
RsaI	GTAC	4 cut(s)	159, 486, 527, 604
RsaNI	GTAC	4 cut(s)	158, 485, 526, 603
RseI	CAYNNNNRTG	2 cut(s)	458, 533
SaqAI	TTAA	4 cut(s)	330, 342, 506, 513
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	3 cut(s)	178, 263, 517
Sau96I	GGNCC	2 cut(s)	4, 125
SchI	GAGTC	2 cut(s)	304, 419
SfaNI	GCATC	4 cut(s)	59, 180, 420, 466
SfcI	CTRYAG	1 cut(s)	571
SinI	GGWCC	2 cut(s)	4, 125
SmiMI	CAYNNNNRTG	2 cut(s)	458, 533
SmlI	CTYRAG	2 cut(s)	329, 480
SmoI	CTYRAG	2 cut(s)	329, 480
Sse9I	AATT	4 cut(s)	77, 110, 381, 557
TaaI	ACNGT	2 cut(s)	278, 323
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	2 cut(s)	428, 554
TasI	AATT	4 cut(s)	77, 110, 381, 557
TatI	WGTACW	2 cut(s)	157, 525
TfiI	GAWTC	3 cut(s)	11, 236, 269
Tru1I	TTAA	4 cut(s)	330, 342, 506, 513
Tru9I	TTAA	4 cut(s)	330, 342, 506, 513
TscAI	CASTG	2 cut(s)	283, 326
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	2 cut(s)	103, 231
TspRI	CASTG	2 cut(s)	283, 326
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	4, 125
XapI	RAATTY	2 cut(s)	110, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.