Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0020448

Physical Location & Seq

Genomic Coordinates Reverse (-)

53613480 .. 53613878

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGACTTTGCGTGCCAAAAGATCACGGAGTTTTCTGACATTTCAGCCAGTAGATTATGAGCCTCCATTCTTCAGATGTTGCACAGAAGAAGAAACTCATAACCCATGGACAAAGAATCCTTTGAAAATGGAGGTCGGGCATGTGAACAGCAAGCATCTTGTCTTAGCTCTCAAGGTAAAGAGCATGCTTGATCCCTGTGAGGATGAAAATGATGATAATCAAGATGATGAAGTGAGCTTAGGAGCTGACTCCATGCAAAGGGATGACTCTTCTGAAACTGACAGTGAGGTAAAACTGATGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

101

Amino Acids

11.65

Weight (kDa)

4.65

Isoelectric Point (pI)

55.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HORMA	PF02301	16 - 52	2.6e-06	HORMA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0020448)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g10350
rosa_laevigata	RLG00000006973
rosa_roxburghii	Rroxscaffold_5G00371690 Rroxscaffold_5G00372150
rosa_samantha	Rh4CG317200
rosa_wichuraiana	Rw4G025580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	55
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	3 cut(s)	167, 237, 245
AluI	AGCT	3 cut(s)	167, 237, 245
AlwI	GGATC	1 cut(s)	185
BmsI	GCATC	2 cut(s)	163, 288
Bpu10I	CCTNAGC	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	155
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	47
Bse8I	GATNNNNATC	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	2 cut(s)	208, 268
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	20, 190
Bsp19I	CCATGG	1 cut(s)	104
BspPI	GGATC	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	2 cut(s)	20, 190
BssT1I	CCWWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	1 cut(s)	274
BstC8I	GCNNGC	3 cut(s)	12, 152, 185
BstDEI	CTNAG	2 cut(s)	163, 238
BstDSI	CCRYGG	1 cut(s)	104
BstF5I	GGATG	2 cut(s)	208, 268
BstKTI	GATC	2 cut(s)	23, 193
BstMBI	GATC	2 cut(s)	20, 190
BstNSI	RCATGY	2 cut(s)	143, 187
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	2 cut(s)	208, 268
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	3 cut(s)	12, 152, 185
CviAII	CATG	4 cut(s)	105, 140, 184, 253
CviJI	RGCY	5 cut(s)	46, 61, 167, 237, 245
CviKI_1	RGCY	5 cut(s)	46, 61, 167, 237, 245
DdeI	CTNAG	2 cut(s)	163, 238
DpnI	GATC	2 cut(s)	22, 192
DpnII	GATC	2 cut(s)	20, 190
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	4 cut(s)	108, 143, 187, 256
FaiI	YATR	7 cut(s)	57, 99, 106, 141, 185, 254, 304
FatI	CATG	4 cut(s)	104, 139, 183, 252
FokI	GGATG	2 cut(s)	215, 275
Hin1II	CATG	4 cut(s)	108, 143, 187, 256
HinfI	GANTC	3 cut(s)	115, 248, 266
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	36, 74, 274
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	2 cut(s)	81, 256
HpyF3I	CTNAG	2 cut(s)	163, 238
Hsp92II	CATG	4 cut(s)	108, 143, 187, 256
Kzo9I	GATC	2 cut(s)	20, 190
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	2 cut(s)	60, 208
LweI	GCATC	2 cut(s)	163, 288
MalI	GATC	2 cut(s)	22, 192
MboI	GATC	2 cut(s)	20, 190
MboII	GAAGA	4 cut(s)	61, 98, 101, 261
MlyI	GAGTC	2 cut(s)	242, 260
MnlI	CCTC	4 cut(s)	72, 124, 193, 280
NcoI	CCATGG	1 cut(s)	104
NdeII	GATC	2 cut(s)	20, 190
NlaIII	CATG	4 cut(s)	108, 143, 187, 256
NspI	RCATGY	2 cut(s)	143, 187
PaeI	GCATGC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	115
PleI	GAGTC	2 cut(s)	242, 260
PpsI	GAGTC	2 cut(s)	242, 260
Sau3AI	GATC	2 cut(s)	20, 190
SchI	GAGTC	2 cut(s)	242, 260
SetI	ASST	6 cut(s)	135, 169, 177, 239, 247, 291
SfaNI	GCATC	2 cut(s)	163, 288
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SphI	GCATGC	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	115
TscAI	CASTG	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	219, 243
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	289
XceI	RCATGY	2 cut(s)	143, 187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.