Rroxscaffold_5G00371690

HORMA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0020448
Physical Location & Seq
Forward (+)
53264242 .. 53267995
3754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00371690.1

Sequence Viewer

Length: 567 bp
ATGGACCAAGGATCCTTTGAGGTTGGCAACGTAAACAGAAAACATCTTCTATTGAATCTCAAGGTAAATAGTGTGTTTGATTCCTGCGAGGATGAAAATGATTGTATTCAAGATGATGAAAATACGATTTTGACACTAAACCTGCATGTTTTGTTACATTTCCCAGGTTCACTAATCATTAGAGGATCAGAGTTGCTCCTGGTACAGAAGATGCTTAGGATAAGTAGTCGCCGCATTGAAACTGTTGAAGTTATTGATGTTCTCGCAAACTTCCCAGACATCTCAATGGAGTCCGAATTTGCGATGGTAAAAATGAATGGTCAAGTAGTCGCAGGTGGTGATAAAGCTCGAAAGACTAACGTTCACATGTACATAAAGGTGATTTGCAATTCCTATCTTTTCATATTTGTCTGTGCGAGGAGTTATCATGACGGTGAGGATGCTTTAAACTCGCCTTTCGATGAGGAAATGTATGCCGATCTGAAAGTGTTTTTGATGGGTGAAGAGGTTGGGCGGTATCAATGTGCTTACAAGGTTAGAACTACTCATGGAAAGAAACACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HORMA NIF REF

Protein Analysis

188

Amino Acids

21.41

Weight (kDa)

5.47

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020448)

Species Orthologous Gene IDs
pyrus_communis pycom13g10350
rosa_laevigata RLG00000006973
rosa_roxburghii Rroxscaffold_5G00371690 Rroxscaffold_5G00372150
rosa_samantha Rh4CG317200
rosa_wichuraiana Rw4G025580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 323
Acc36I ACCTGC 2 cut(s) 150, 323
AciI CCGC 2 cut(s) 232, 514
AclI AACGTT 1 cut(s) 360
AclWI GGATC 3 cut(s) 6, 19, 193
AcsI RAATTY 1 cut(s) 296
AfaI GTAC 2 cut(s) 204, 371
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 4 cut(s) 55, 110, 239, 248
AjnI CCWGG 2 cut(s) 163, 198
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
AlwI GGATC 3 cut(s) 6, 19, 193
ApoI RAATTY 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 4 cut(s) 350, 391, 446, 512
AvaII GGWCC 1 cut(s) 4
BamHI GGATCC 1 cut(s) 11
BccI CCATC 2 cut(s) 298, 490
BciT130I CCWGG 2 cut(s) 165, 200
BfuAI ACCTGC 2 cut(s) 150, 323
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
Bme1390I CCNGG 2 cut(s) 165, 200
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 2 cut(s) 165, 200
BmsI GCATC 2 cut(s) 201, 430
Bpu10I CCTNAGC 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 7, 163
BseBI CCWGG 2 cut(s) 165, 200
BseDI CCNNGG 2 cut(s) 7, 163
BseGI GGATG 2 cut(s) 97, 445
BseRI GAGGAG 1 cut(s) 433
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 3 cut(s) 11, 185, 478
BspACI CCGC 2 cut(s) 232, 514
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 13
BspMI ACCTGC 2 cut(s) 150, 323
BspPI GGATC 3 cut(s) 6, 19, 193
BsrGI TGTACA 1 cut(s) 369
BssECI CCNNGG 2 cut(s) 7, 163
BssMI GATC 3 cut(s) 11, 185, 478
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 2 cut(s) 165, 200
Bst4CI ACNGT 2 cut(s) 244, 434
Bst6I CTCTTC 1 cut(s) 498
BstAUI TGTACA 1 cut(s) 369
BstDEI CTNAG 1 cut(s) 215
BstF5I GGATG 2 cut(s) 97, 445
BstKTI GATC 3 cut(s) 14, 188, 481
BstMBI GATC 3 cut(s) 11, 185, 478
BstNI CCWGG 2 cut(s) 165, 200
BstNSI RCATGY 2 cut(s) 149, 370
BstSCI CCNGG 2 cut(s) 163, 198
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BtgZI GCGATG 1 cut(s) 317
BtsCI GGATG 2 cut(s) 97, 445
BveI ACCTGC 2 cut(s) 150, 323
CciI TCATGA 1 cut(s) 427
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 203, 370
CviAII CATG 4 cut(s) 146, 367, 428, 548
CviJI RGCY 1 cut(s) 347
CviKI_1 RGCY 1 cut(s) 347
CviQI GTAC 2 cut(s) 203, 370
DdeI CTNAG 1 cut(s) 215
DpnI GATC 3 cut(s) 13, 187, 480
DpnII GATC 3 cut(s) 11, 185, 478
DraI TTTAAA 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Eco130I CCWWGG 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 163, 198
EcoT14I CCWWGG 1 cut(s) 7
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 4 cut(s) 149, 370, 431, 551
FaiI YATR 7 cut(s) 147, 368, 374, 404, 429, 474, 549
FatI CATG 4 cut(s) 145, 366, 427, 547
Fnu4HI GCNGC 1 cut(s) 232
FokI GGATG 2 cut(s) 104, 452
Fsp4HI GCNGC 1 cut(s) 232
GluI GCNGC 1 cut(s) 232
Hin1II CATG 4 cut(s) 149, 370, 431, 551
HinfI GANTC 3 cut(s) 55, 80, 290
HphI GGTGA 4 cut(s) 350, 391, 446, 512
Hpy166II GTNNAC 3 cut(s) 34, 170, 364
Hpy188I TCNGA 3 cut(s) 190, 295, 483
Hpy188III TCNNGA 2 cut(s) 110, 428
Hpy8I GTNNAC 3 cut(s) 34, 170, 364
HpyCH4III ACNGT 2 cut(s) 244, 434
HpyCH4IV ACGT 2 cut(s) 30, 360
HpyCH4V TGCA 2 cut(s) 145, 387
HpyF3I CTNAG 1 cut(s) 215
HpySE526I ACGT 2 cut(s) 30, 360
Hsp92II CATG 4 cut(s) 149, 370, 431, 551
Kzo9I GATC 3 cut(s) 11, 185, 478
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 8 cut(s) 97, 150, 155, 177, 185, 212, 288, 318
LweI GCATC 2 cut(s) 201, 430
MaeII ACGT 2 cut(s) 30, 360
MaeIII GTNAC 1 cut(s) 153
MalI GATC 3 cut(s) 13, 187, 480
MboI GATC 3 cut(s) 11, 185, 478
MboII GAAGA 3 cut(s) 38, 220, 515
MflI RGATCY 1 cut(s) 11
MluCI AATT 2 cut(s) 296, 388
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 7 cut(s) 13, 82, 176, 411, 430, 457, 499
MseI TTAA 1 cut(s) 446
MslI CAYNNNNRTG 3 cut(s) 284, 377, 432
MspR9I CCNGG 2 cut(s) 165, 200
MvaI CCWGG 2 cut(s) 165, 200
NdeII GATC 3 cut(s) 11, 185, 478
NlaIII CATG 4 cut(s) 149, 370, 431, 551
NlaIV GGNNCC 1 cut(s) 13
NspI RCATGY 2 cut(s) 149, 370
PagI TCATGA 1 cut(s) 427
PaqCI CACCTGC 1 cut(s) 323
PciI ACATGT 1 cut(s) 366
PfeI GAWTC 2 cut(s) 55, 80
PkrI GCNGC 1 cut(s) 233
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PscI ACATGT 1 cut(s) 366
Psp1406I AACGTT 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 163, 198
PspGI CCWGG 2 cut(s) 163, 198
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 11
RsaI GTAC 2 cut(s) 204, 371
RsaNI GTAC 2 cut(s) 203, 370
RseI CAYNNNNRTG 3 cut(s) 284, 377, 432
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 3 cut(s) 11, 185, 478
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 2 cut(s) 165, 200
SfaNI GCATC 2 cut(s) 201, 430
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 3 cut(s) 284, 377, 432
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 296, 388
SsiI CCGC 2 cut(s) 232, 514
StyD4I CCNGG 2 cut(s) 163, 198
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 2 cut(s) 244, 434
TaiI ACGT 2 cut(s) 33, 363
TaqI TCGA 2 cut(s) 349, 459
TasI AATT 2 cut(s) 296, 388
TatI WGTACW 1 cut(s) 369
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 2 cut(s) 55, 80
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TspDTI ATGAA 4 cut(s) 108, 132, 329, 391
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 296
XceI RCATGY 2 cut(s) 149, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.