Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0020448

Physical Location & Seq

Genomic Coordinates Forward (+)

51701662 .. 51704134

Gene Structure 2473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G025580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGACCAAGGATCCTTTGAGGTTGGCAACGTAAACAGAAAACATCTTCTATTAAATCTCAAGGTAAATAGTGTGTTTGATTCCTGCAAGGATGAAAATGATTGTATTCAAGATGATGAAGTGAGCCTAGGAGCTGATTCCTTGCAAATGGATGGGTCTTCTGAATGTGACAGTGAGATACGAAAGTTTTGTAGATTTTCATTTAGGCTAGGTGATTCATGTTGCAGTCTATTCTGGATGTGGATAACATTGAACCATAAAGCAAGTCAGATCTTCATCCAGTGGGTCATCTTAAGGAAGCAACAGCAGAGACACTCCACATGCGGTGTGCTCCACTCTATTGGATCATATCTCACATATCTCACACGCATGAGAATAAGGAATAATTCACATGAACACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

134

Amino Acids

15.55

Weight (kDa)

6.57

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020448)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g10350
rosa_laevigata	RLG00000006973
rosa_roxburghii	Rroxscaffold_5G00371690 Rroxscaffold_5G00372150
rosa_samantha	Rh4CG317200
rosa_wichuraiana	Rw4G025580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	3 cut(s)	6, 19, 352
AflII	CTTAAG	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	110, 253
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	3 cut(s)	6, 19, 352
AspA2I	CCTAGG	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	4
AvrII	CCTAGG	1 cut(s)	127
BaeI	ACNNNNGTAYC	2 cut(s)	170, 203
BamHI	GGATCC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	333
BccI	CCATC	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	2 cut(s)	128, 209
BfrI	CTTAAG	1 cut(s)	292
BglII	AGATCT	1 cut(s)	270
BlnI	CCTAGG	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	7, 127
Bse1I	ACTGG	1 cut(s)	280
Bse8I	GATNNNNATC	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	7, 127
BseGI	GGATG	4 cut(s)	97, 157, 243, 276
BseJI	GATNNNNATC	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	333
BsmAI	GTCTC	1 cut(s)	304
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	11, 270, 344
BspACI	CCGC	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	13
BspPI	GGATC	3 cut(s)	6, 19, 352
BspTI	CTTAAG	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	7, 127
BssMI	GATC	3 cut(s)	11, 270, 344
BssT1I	CCWWGG	2 cut(s)	7, 127
Bst4CI	ACNGT	2 cut(s)	173, 401
BstAFI	CTTAAG	1 cut(s)	292
BstF5I	GGATG	4 cut(s)	97, 157, 243, 276
BstKTI	GATC	3 cut(s)	14, 273, 347
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	3 cut(s)	11, 270, 344
BstNSI	RCATGY	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	2 cut(s)	11, 270
BstXI	CCANNNNNNTGG	1 cut(s)	341
BstYI	RGATCY	2 cut(s)	11, 270
BtsCI	GGATG	4 cut(s)	97, 157, 243, 276
BtsIMutI	CAGTG	3 cut(s)	178, 287, 397
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	4 cut(s)	219, 321, 370, 392
CviJI	RGCY	3 cut(s)	126, 134, 208
CviKI_1	RGCY	3 cut(s)	126, 134, 208
DpnI	GATC	3 cut(s)	13, 272, 346
DpnII	GATC	3 cut(s)	11, 270, 344
Eco130I	CCWWGG	2 cut(s)	7, 127
Eco47I	GGWCC	1 cut(s)	4
EcoT14I	CCWWGG	2 cut(s)	7, 127
ErhI	CCWWGG	2 cut(s)	7, 127
FaeI	CATG	4 cut(s)	222, 324, 373, 395
FaiI	YATR	7 cut(s)	220, 258, 322, 349, 358, 371, 393
FatI	CATG	4 cut(s)	218, 320, 369, 391
FokI	GGATG	4 cut(s)	104, 164, 250, 263
FspBI	CTAG	2 cut(s)	128, 209
Hin1II	CATG	4 cut(s)	222, 324, 373, 395
HinfI	GANTC	3 cut(s)	80, 137, 215
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	163, 270
Hpy188III	TCNNGA	2 cut(s)	110, 235
Hpy8I	GTNNAC	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	173, 401
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	3 cut(s)	87, 145, 225
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	4 cut(s)	222, 324, 373, 395
Kzo9I	GATC	3 cut(s)	11, 270, 344
LmnI	GCTCC	2 cut(s)	131, 336
LpnPI	CCDG	3 cut(s)	97, 220, 293
MaeI	CTAG	2 cut(s)	128, 209
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	3 cut(s)	13, 272, 346
MboI	GATC	3 cut(s)	11, 270, 344
MboII	GAAGA	3 cut(s)	38, 150, 265
MflI	RGATCY	2 cut(s)	11, 270
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	1 cut(s)	385
MnlI	CCTC	1 cut(s)	13
MseI	TTAA	3 cut(s)	53, 293, 403
MslI	CAYNNNNRTG	1 cut(s)	368
MspCI	CTTAAG	1 cut(s)	292
NdeII	GATC	3 cut(s)	11, 270, 344
NlaIII	CATG	4 cut(s)	222, 324, 373, 395
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	167
NspI	RCATGY	1 cut(s)	324
PfeI	GAWTC	3 cut(s)	80, 137, 215
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	11, 270
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	3 cut(s)	53, 293, 403
Sau3AI	GATC	3 cut(s)	11, 270, 344
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	5 cut(s)	24, 33, 66, 136, 214
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	59, 292
SmoI	CTYRAG	2 cut(s)	59, 292
Sse9I	AATT	1 cut(s)	385
SsiI	CCGC	1 cut(s)	324
SspMI	CTAG	2 cut(s)	128, 209
StyI	CCWWGG	2 cut(s)	7, 127
TaaI	ACNGT	2 cut(s)	173, 401
TaiI	ACGT	1 cut(s)	33
TasI	AATT	1 cut(s)	385
TfiI	GAWTC	3 cut(s)	80, 137, 215
Tru1I	TTAA	3 cut(s)	53, 293, 403
Tru9I	TTAA	3 cut(s)	53, 293, 403
TscAI	CASTG	3 cut(s)	178, 287, 404
TseFI	GTSAC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	5 cut(s)	108, 132, 189, 207, 265
TspRI	CASTG	3 cut(s)	178, 287, 404
Vha464I	CTTAAG	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	1 cut(s)	324
XmaJI	CCTAGG	1 cut(s)	127
XspI	CTAG	2 cut(s)	128, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.