Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0016312

Physical Location & Seq

Genomic Coordinates Forward (+)

7964720 .. 7967991

Gene Structure 3272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3093 bp

ATGAATACAATGGATTTCAATATCGGAATCGAGGATGTAGGAGTGGCAGTGCTGCAGGAATTATGGAATAAGGTTGCAATTCAAGCCACAGGGCTTGTCAACGAAACGAAGGATCTGTTGTTTGAAAAGGACAGCTTTCTGGAGTTCTCCAGGAGTATATCTGAGCTAAATATTCTCCTCGACAAGTTGAATGCCCGGAAGGTTGAAAATGCGCTGGGTTTGGAGTCCACAAAGGCTAAACTGACCACATTGAACCGTCAGTTGAAAAAAGCAAGCAAGATAATCAAGGATTACAAATGTGGAAGCCGCCTACGTCTCTTGCTTAAATCCCACTCAATGCTCTTGCAGATGCAGGATGTAGCCAAAGATATTGCTAATACCATCTCCTCATTTCAGCTGGTCAATCTTGATATCGCGCTGCACTTGAATTCGATGACTAACCAGATCATCAACAATCTGGAATCAATGGAGTTCAGGTCAGCAGCTGCAACAGAATCAATTGCTTCAGAGATGGAGAATTCGATGTCACAAAATGCTACAAATAGGGAGAATGCTCAAAAGCTTTTGGAGAAGATTGCAGATGCCCTTGGTGCTAGGGCGAATGCATCCTTGGTACAAAATGAGCTGCAACTTTTGAAGCAAGAGAAAGAAGAGATGGAAGCGCAAAAGAAGCAGGCAGAGGCACTTCAGCTATCGCAACTGATTGACTTCCTCTACACTACAGAAGTTGTTACTAGACCAGATGACGAGGGAACCTCTACTTACCACCAGCAGTACCCAATTGGTTCGTTCATATGCGAACTTTGCAACAAGATGATGACAGACCCCGTAGCAATTATTTGCGGTCACAGCTTTGAGAGGAAGGCAATTCAGGAACACTTTCGACGTGGAGAGAAGAACTGCCCCACCTGCAGACAGGAACTTTCATCTCTAGAGCTCACGCCTAACCTTTTGCTTCGAAACTCTATAGAAGAATGGAATCAAAGAGACCAGGACCTGAAATTCCTAGCTGCAGTTCATGGACTAAAATCCATTGACCACTCGAGACAGGACACGGCTTTAGAGGACATGCAATTTCTTTTAAAAATGCCAAGATATGTAACCAAAGCTGCAGAGGAAGGACTTGCAACAAAGCTGGTGGTAATCTTAAAAGATGAAGGGGTAAATGCTGTGGCAGCATTAAAATGTCTCTACTATTTAGCTAAACACAACGATGAACAAAAGGAAACCATTGTCAAAGCAGGGGGCATTCGGAGAATTGTGAAGCATATCTACAAAGGTGGAAGCAAACATGATGCCGTTGCAGTCTTGTTGGAGTTGTCAGCAAAGGAAACCCTTGGGGAGAAAATAGGAAATGCAAAAGATTGCATTCCTCTTCTCGTTTCTTTACTCCATAAAGATAACACTGAAGTGTCACAGAAATCTCATAAGGTATTGCAGAACCTCTCCTTGAACACACATTTTGTTGTCAAGATGGCTGAAGCAGGACACCTTCAACCTTTCGTTGCTCGCTTCAATGAAGCACCACAGGAGACCAGAACATTGATGGCTGCAGCCTTGACGAATATGCAACTCAAGGAGAATAGTGTTGAAGACTTAAAGGAGCCGCAATTTATACAGAATTTGGTTCAGATGCTGTCTTCAAGCTCTCCGGCATGCAAATCAGCTTGCCTTAAATCCATCAAGAAACTCGTAGCATATCCCAGGATCGTAAAACGACTTCTTAAAGACCCTGCCACTATACCACATTTGCTTGGTCTCATCTCATTTAACAAGTCTGATCCACACTTGAAACAAGAAGCAGCTGAGATTCTTGCTAACATGATTGGAGCGAGTCAACAATTTGAACAACTAAAATATCAGGGCTTGGAGGAGCTGCAATCGAAGTACAATGTCTGTGTACTATTGCAGCTTGTAACCAGCTCTGAAGATCAAACCAGGATTCAATTCTTGCACCTACTGGTTGAACTAAGCTATAAATCAGAGATAGCTCGAGATATAATACGATCTGAACAGGAGGCAACTGCTCACCTTTTCTCTTCCCTTTATAGCGATCATCCTGCGCCTGCAGTGAGAAGATGGGCAATGAAACTTATATATTGCATATCCAAGGGTCATCCAGATGGGGTTCCCCTTCCACCATCTCCTGCAAAAGAAACTGCCATTAACACCCTGTCAATGATCTTCATTAATTCACCGGATATTGAAGAAAGGTCAACTGCGGCAGGAATTATCAGCCAGCTTCCCAGGGACGATAGTAGTATTGATGAGATACTCCGAAAATCAGAAGTGCTAAAAGCCATTCATGAGGTAATTTGCAGCATGGATGAGGAAAATTGGGGGAACAGAGCACAATCCAACCAAGGCACATCTCTACTGGAGAATGCTCTAGCAGCCCTTTTGCGCTACACAGAACCCAACAAGCCCGAACTTCAGAAACAATTGGGCAGGCTTGAAGTGTACCCATCACTAGTTCGTGTTCTAACCCGTGGCAGCTCACTAGCTAAGCAGAGAACAGCCATTGCACTTGCCCAACTTTCCCAGTCTGCCAGCCTGTCAGTCTCCAATGAAACCATCAAGCAAACCAAGCACCCTGTGCCCCTCTTTGATTTGATGAAGAATGTTTCCATTATGTTGTGCTTTTCGGCATCATCAGAGAATGAAAACTCCTGTCCTGTTCATGGTGCTGCTTGTTCACCAAGAGATACCTTCTGCCTGGTTAAGGCAAATGCTGTGAGCCCGCTTGTGCGCACTTTGAGTGAGACGGAGTCTGGTGTGGCAGAGGCAGCTCTGACGGCACTTGAAACATTGCTAATTGACCACAGCACACTAACAGATGCAACTGCTGCCATTGTGGACAACCAGGGTGTGGTTGCCATTCTGCAACTCTTGGACAAAGGATCTTCATCTGCAAAAACCAAAGCCTTAGACCTGTTTCAGAAGATCCTGGAGCATACAACTATCGCTGAGACGTTAAAGAAGAGGTTTGAGAATATCCTTGTCCAACTTCTCCGGGACGATGAACTAAAGAAAAAAGCAGCTTTGGTACTTAGGCAGATGGGAATCATCCCCGATCAATCCTCATACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009894 GO:0009987 GO:0010115 GO:0010150 GO:0010271 GO:0010380 GO:0010565 GO:0016020 GO:0016567 GO:0016740 GO:0019216 GO:0019222 GO:0019538 GO:0019747 GO:0019787 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0032446 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043455 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0046890 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051055 GO:0051171 GO:0051193 GO:0062012 GO:0062014 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0071944 GO:0080090 GO:0090056 GO:0090359 GO:0090693 GO:0099402 GO:0140096 GO:1901401 GO:1901404 GO:1901463 GO:1901564 GO:1902930 GO:1902931

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

1031

Amino Acids

114.57

Weight (kDa)

6.45

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016312)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22300 FvH4_4g22300
malus_domestica	MD13G1133000.v1.1
prunus_persica	Prupe.1G212500_v2.0.a1
pyrus_communis	pycom13g11540
rosa_chinensis	RchiOBHm_Chr4g0428541
rosa_laevigata	RLG00000007144
rosa_multiflora	Rmu_sc0002072.1_g000017
rosa_roxburghii	Rroxscaffold_5G00370240
rosa_rugosa	Rorug04G0226100
rosa_samantha	Rh4AG283600 Rh4BG289300 Rh4CG305200 Rh4DG286300
rosa_wichuraiana	Rw4G024620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	917
Acc16I	TGCGCA	1 cut(s)	2750
Acc36I	ACCTGC	1 cut(s)	917
AccB7I	CCANNNNNTGG	1 cut(s)	2869
AccII	CGCG	1 cut(s)	416
AciI	CCGC	5 cut(s)	307, 843, 1607, 2222, 2741
AclWI	GGATC	5 cut(s)	120, 1715, 1775, 2908, 2938
AcsI	RAATTY	4 cut(s)	427, 517, 1001, 1621
AcuI	CTGAAG	6 cut(s)	489, 671, 1428, 1500, 1947, 2417
AdeI	CACNNNGTG	1 cut(s)	2596
AfaI	GTAC	6 cut(s)	615, 776, 1889, 1902, 2462, 3048
AfiI	CCNNNNNNNGG	3 cut(s)	2681, 2722, 2869
AhlI	ACTAGT	1 cut(s)	2470
AjiI	CACGTC	1 cut(s)	887
AjnI	CCWGG	8 cut(s)	149, 990, 1703, 1937, 2246, 2715, 2862, 2946
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AleI	CACNNNNGTG	1 cut(s)	1409
Alw21I	GWGCWC	2 cut(s)	939, 2353
Alw26I	GTCTC	9 cut(s)	320, 981, 1039, 1193, 1526, 1763, 2566, 2756, 2963
AlwI	GGATC	5 cut(s)	120, 1715, 1775, 2908, 2938
AlwNI	CAGNNNCTG	3 cut(s)	485, 997, 1636
Ama87I	CYCGRG	2 cut(s)	1042, 1992
ApoI	RAATTY	4 cut(s)	427, 517, 1001, 1621
AseI	ATTAAT	1 cut(s)	2190
Asp700I	GAANNNNTTC	1 cut(s)	879
AspLEI	GCGC	6 cut(s)	214, 418, 664, 2065, 2406, 2751
AspS9I	GGNCC	1 cut(s)	994
AsuC2I	CCSGG	2 cut(s)	196, 3014
AsuHPI	GGTGA	3 cut(s)	2021, 2187, 2688
AsuII	TTCGAA	1 cut(s)	958
AvaI	CYCGRG	2 cut(s)	1042, 1992
AvaII	GGWCC	1 cut(s)	994
BaeGI	GKGCMC	1 cut(s)	2601
BanII	GRGCYC	2 cut(s)	939, 2741
BarI	GAAGNNNNNNTAC	4 cut(s)	1256, 1288, 1704, 1736
BbsI	GAAGAC	2 cut(s)	1599, 1632
Bbv12I	GWGCWC	2 cut(s)	939, 2353
BceAI	ACGGC	3 cut(s)	1071, 1283, 2811
BcgI	CGANNNNNNTGC	2 cut(s)	2042, 2076
BciT130I	CCWGG	8 cut(s)	151, 992, 1705, 1939, 2248, 2717, 2864, 2948
BcnI	CCSGG	2 cut(s)	196, 3014
BcoDI	GTCTC	9 cut(s)	320, 981, 1039, 1193, 1526, 1763, 2566, 2756, 2963
BcuI	ACTAGT	1 cut(s)	2470
BfaI	CTAG	7 cut(s)	594, 735, 932, 1007, 2390, 2471, 2501
BfmI	CTRYAG	8 cut(s)	53, 720, 910, 966, 1011, 1110, 1551, 2067
BfuAI	ACCTGC	1 cut(s)	917
BlpI	GCTNAGC	1 cut(s)	2505
Bme18I	GGWCC	1 cut(s)	994
BmeT110I	CYCGRG	2 cut(s)	1042, 1992
BmgBI	CACGTC	1 cut(s)	887
BmgT120I	GGNCC	1 cut(s)	994
BmiI	GGNNCC	3 cut(s)	754, 1605, 2130
BmrI	ACTGGG	1 cut(s)	2536
BmsI	GCATC	7 cut(s)	339, 571, 614, 1285, 1623, 2657, 2827
BmuI	ACTGGG	1 cut(s)	2536
BpiI	GAAGAC	2 cut(s)	1599, 1632
BplI	GAGNNNNNCTC	2 cut(s)	740, 772
BpmI	CTGGAG	4 cut(s)	133, 161, 2399, 2969
Bpu1102I	GCTNAGC	1 cut(s)	2505
Bpu14I	TTCGAA	1 cut(s)	958
BpuEI	CTTGAG	1 cut(s)	1559
BpuMI	CCSGG	2 cut(s)	196, 3014
BsaBI	GATNNNNATC	2 cut(s)	2905, 3062
BsaI	GGTCTC	3 cut(s)	981, 1526, 1763
BsaWI	WCCGGW	1 cut(s)	2197
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 461, 491
Bsc4I	CCNNNNNNNGG	3 cut(s)	2681, 2722, 2869
Bse1I	ACTGG	3 cut(s)	1965, 2382, 2542
Bse3DI	GCAATG	3 cut(s)	2091, 2520, 2807
Bse8I	GATNNNNATC	2 cut(s)	2905, 3062
BseBI	CCWGG	8 cut(s)	151, 992, 1705, 1939, 2248, 2717, 2864, 2948
BseGI	GGATG	7 cut(s)	40, 361, 605, 2056, 2116, 2332, 3066
BseJI	GATNNNNATC	2 cut(s)	2905, 3062
BseLI	CCNNNNNNNGG	3 cut(s)	2681, 2722, 2869
BseMI	GCAATG	3 cut(s)	2091, 2520, 2807
BseMII	CTCAG	3 cut(s)	153, 1797, 2958
BseNI	ACTGG	3 cut(s)	1965, 2382, 2542
BseRI	GAGGAG	3 cut(s)	167, 376, 1886
BseSI	GKGCMC	1 cut(s)	2601
BseYI	CCCAGC	1 cut(s)	214
BsgI	GTGCAG	1 cut(s)	404
Bsh1236I	CGCG	1 cut(s)	416
BsiHKAI	GWGCWC	2 cut(s)	939, 2353
BsiHKCI	CYCGRG	2 cut(s)	1042, 1992
BsiSI	CCGG	4 cut(s)	196, 1652, 2198, 3013
BslFI	GGGAC	2 cut(s)	2264, 3029
BslI	CCNNNNNNNGG	3 cut(s)	2681, 2722, 2869
BsmAI	GTCTC	9 cut(s)	320, 981, 1039, 1193, 1526, 1763, 2566, 2756, 2963
BsmBI	CGTCTC	3 cut(s)	320, 2756, 2963
BsmFI	GGGAC	2 cut(s)	2264, 3029
BsmI	GAATGC	6 cut(s)	196, 556, 607, 1248, 1368, 2389
Bso31I	GGTCTC	3 cut(s)	981, 1526, 1763
BsoBI	CYCGRG	2 cut(s)	1042, 1992
Bsp119I	TTCGAA	1 cut(s)	958
Bsp1286I	GDGCHC	4 cut(s)	939, 2353, 2601, 2741
Bsp1720I	GCTNAGC	1 cut(s)	2505
BspACI	CCGC	5 cut(s)	307, 843, 1607, 2222, 2741
BspCNI	CTCAG	3 cut(s)	154, 1798, 2959
BspFNI	CGCG	1 cut(s)	416
BspHI	TCATGA	1 cut(s)	2305
BspLI	GGNNCC	3 cut(s)	754, 1605, 2130
BspMAI	CTGCAG	6 cut(s)	57, 914, 1015, 1114, 1555, 2071
BspMI	ACCTGC	1 cut(s)	917
BspPI	GGATC	5 cut(s)	120, 1715, 1775, 2908, 2938
BspT104I	TTCGAA	1 cut(s)	958
BspTNI	GGTCTC	3 cut(s)	981, 1526, 1763
BsrDI	GCAATG	3 cut(s)	2091, 2520, 2807
BsrI	ACTGG	3 cut(s)	1965, 2382, 2542
BssT1I	CCWWGG	5 cut(s)	586, 609, 1336, 2109, 2362
Bst2UI	CCWGG	8 cut(s)	151, 992, 1705, 1939, 2248, 2717, 2864, 2948
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	4 cut(s)	645, 1380, 2044, 2975
BstAPI	GCANNNNNTGC	2 cut(s)	2596, 2846
BstBI	TTCGAA	1 cut(s)	958
BstDEI	CTNAG	7 cut(s)	162, 1806, 1970, 2505, 2926, 2967, 3050
BstDSI	CCRYGG	1 cut(s)	2488
BstENI	CCTNNNNNAGG	1 cut(s)	2720
BstF5I	GGATG	7 cut(s)	40, 361, 605, 2056, 2116, 2332, 3066
BstFNI	CGCG	1 cut(s)	416
BstHHI	GCGC	6 cut(s)	214, 418, 664, 2065, 2406, 2751
BstMAI	GTCTC	9 cut(s)	320, 981, 1039, 1193, 1526, 1763, 2566, 2756, 2963
BstNI	CCWGG	8 cut(s)	151, 992, 1705, 1939, 2248, 2717, 2864, 2948
BstNSI	RCATGY	2 cut(s)	1072, 1659
BstSFI	CTRYAG	8 cut(s)	53, 720, 910, 966, 1011, 1110, 1551, 2067
BstSLI	GKGCMC	1 cut(s)	2601
BstUI	CGCG	1 cut(s)	416
BstV2I	GAAGAC	2 cut(s)	1599, 1632
BstX2I	RGATCY	3 cut(s)	112, 2900, 2943
BstYI	RGATCY	3 cut(s)	112, 2900, 2943
BtgI	CCRYGG	1 cut(s)	2488
BtrI	CACGTC	1 cut(s)	887
BtsCI	GGATG	7 cut(s)	40, 361, 605, 2056, 2116, 2332, 3066
BtsI	GCAGTG	2 cut(s)	54, 2076
BtsIMutI	CAGTG	3 cut(s)	54, 1404, 2076
BveI	ACCTGC	1 cut(s)	917
CaiI	CAGNNNCTG	3 cut(s)	485, 997, 1636
CciI	TCATGA	1 cut(s)	2305
CfoI	GCGC	6 cut(s)	214, 418, 664, 2065, 2406, 2751
Cfr13I	GGNCC	1 cut(s)	994
Csp6I	GTAC	6 cut(s)	614, 775, 1888, 1901, 2461, 3047
CspCI	CAANNNNNGTGG	4 cut(s)	76, 111, 1119, 1154
CviAII	CATG	8 cut(s)	1019, 1069, 1292, 1656, 1822, 2306, 2323, 2681
CviQI	GTAC	6 cut(s)	614, 775, 1888, 1901, 2461, 3047
DdeI	CTNAG	7 cut(s)	162, 1806, 1970, 2505, 2926, 2967, 3050
DraI	TTTAAA	1 cut(s)	1083
DraIII	CACNNNGTG	1 cut(s)	2596
Eam1104I	CTCTTC	4 cut(s)	645, 1380, 2044, 2975
EarI	CTCTTC	4 cut(s)	645, 1380, 2044, 2975
Ecl136II	GAGCTC	1 cut(s)	937
Eco130I	CCWWGG	5 cut(s)	586, 609, 1336, 2109, 2362
Eco24I	GRGCYC	2 cut(s)	939, 2741
Eco31I	GGTCTC	3 cut(s)	981, 1526, 1763
Eco32I	GATATC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	994
Eco53kI	GAGCTC	1 cut(s)	937
Eco57I	CTGAAG	6 cut(s)	489, 671, 1428, 1500, 1947, 2417
Eco88I	CYCGRG	2 cut(s)	1042, 1992
EcoICRI	GAGCTC	1 cut(s)	937
EcoNI	CCTNNNNNAGG	1 cut(s)	2720
EcoO109I	RGGNCCY	1 cut(s)	994
EcoRI	GAATTC	2 cut(s)	427, 517
EcoRII	CCWGG	8 cut(s)	149, 990, 1703, 1937, 2246, 2715, 2862, 2946
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	5 cut(s)	586, 609, 1336, 2109, 2362
EcoT22I	ATGCAT	1 cut(s)	607
EcoT38I	GRGCYC	2 cut(s)	939, 2741
ErhI	CCWWGG	5 cut(s)	586, 609, 1336, 2109, 2362
Esp3I	CGTCTC	3 cut(s)	320, 2756, 2963
FaeI	CATG	8 cut(s)	1022, 1072, 1295, 1659, 1825, 2309, 2326, 2684
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	2 cut(s)	2264, 3029
FatI	CATG	8 cut(s)	1018, 1068, 1291, 1655, 1821, 2305, 2322, 2680
FauI	CCCGC	1 cut(s)	2748
FauNDI	CATATG	1 cut(s)	794
FokI	GGATG	7 cut(s)	47, 368, 592, 2043, 2103, 2339, 3053
FriOI	GRGCYC	2 cut(s)	939, 2741
FspAI	RTGCGCAY	1 cut(s)	2750
FspBI	CTAG	7 cut(s)	594, 735, 932, 1007, 2390, 2471, 2501
FspI	TGCGCA	1 cut(s)	2750
GlaI	GCGC	6 cut(s)	213, 417, 663, 2064, 2405, 2750
GsaI	CCCAGC	1 cut(s)	218
GsuI	CTGGAG	4 cut(s)	133, 161, 2399, 2969
HapII	CCGG	4 cut(s)	196, 1652, 2198, 3013
HhaI	GCGC	6 cut(s)	214, 418, 664, 2065, 2406, 2751
Hin1II	CATG	8 cut(s)	1022, 1072, 1295, 1659, 1825, 2309, 2326, 2684
Hin6I	GCGC	6 cut(s)	212, 416, 662, 2063, 2404, 2749
HinP1I	GCGC	6 cut(s)	212, 416, 662, 2063, 2404, 2749
HincII	GTYRAC	3 cut(s)	100, 1838, 2217
HindII	GTYRAC	3 cut(s)	100, 1838, 2217
HindIII	AAGCTT	1 cut(s)	560
HpaII	CCGG	4 cut(s)	196, 1652, 2198, 3013
HphI	GGTGA	3 cut(s)	2021, 2187, 2688
Hpy166II	GTNNAC	8 cut(s)	100, 228, 1838, 1901, 2217, 2461, 2696, 2857
Hpy8I	GTNNAC	8 cut(s)	100, 228, 1838, 1901, 2217, 2461, 2696, 2857
Hpy99I	CGWCG	1 cut(s)	888
HpyAV	CCTTC	8 cut(s)	103, 193, 856, 1112, 1151, 1502, 2144, 2719
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	3 cut(s)	313, 886, 2972
HpyF3I	CTNAG	7 cut(s)	162, 1806, 1970, 2505, 2926, 2967, 3050
HpySE526I	ACGT	3 cut(s)	313, 886, 2972
Hsp92II	CATG	8 cut(s)	1022, 1072, 1295, 1659, 1825, 2309, 2326, 2684
HspAI	GCGC	6 cut(s)	212, 416, 662, 2063, 2404, 2749
LmnI	GCTCC	4 cut(s)	1603, 1829, 1873, 2950
LweI	GCATC	7 cut(s)	339, 571, 614, 1285, 1623, 2657, 2827
MaeI	CTAG	7 cut(s)	594, 735, 932, 1007, 2390, 2471, 2501
MaeII	ACGT	3 cut(s)	313, 886, 2972
MaeIII	GTNAC	6 cut(s)	525, 730, 845, 1099, 1413, 1915
MfeI	CAATTG	3 cut(s)	498, 780, 2441
MflI	RGATCY	3 cut(s)	112, 2900, 2943
MhlI	GDGCHC	4 cut(s)	939, 2353, 2601, 2741
MlyI	GAGTC	3 cut(s)	233, 1843, 2777
MmeI	TCCRAC	3 cut(s)	1293, 2382, 3028
Mph1103I	ATGCAT	1 cut(s)	607
MroXI	GAANNNNTTC	1 cut(s)	879
MslI	CAYNNNNRTG	4 cut(s)	1183, 1212, 1409, 2121
MspA1I	CMGCKG	3 cut(s)	397, 485, 1805
MspI	CCGG	4 cut(s)	196, 1652, 2198, 3013
MunI	CAATTG	3 cut(s)	498, 780, 2441
Mva1269I	GAATGC	6 cut(s)	196, 556, 607, 1248, 1368, 2389
MvaI	CCWGG	8 cut(s)	151, 992, 1705, 1939, 2248, 2717, 2864, 2948
MvnI	CGCG	1 cut(s)	416
NciI	CCSGG	2 cut(s)	196, 3014
NdeI	CATATG	1 cut(s)	794
NlaIII	CATG	8 cut(s)	1022, 1072, 1295, 1659, 1825, 2309, 2326, 2684
NlaIV	GGNNCC	3 cut(s)	754, 1605, 2130
NmuCI	GTSAC	3 cut(s)	525, 845, 1413
NsbI	TGCGCA	1 cut(s)	2750
NsiI	ATGCAT	1 cut(s)	607
NspI	RCATGY	2 cut(s)	1072, 1659
NspV	TTCGAA	1 cut(s)	958
OliI	CACNNNNGTG	1 cut(s)	1409
PaeI	GCATGC	1 cut(s)	1659
PaeR7I	CTCGAG	2 cut(s)	1042, 1992
PagI	TCATGA	1 cut(s)	2305
PaqCI	CACCTGC	1 cut(s)	917
PasI	CCCWGGG	1 cut(s)	2247
PctI	GAATGC	6 cut(s)	196, 556, 607, 1248, 1368, 2389
PdmI	GAANNNNTTC	1 cut(s)	879
PfeI	GAWTC	7 cut(s)	27, 461, 494, 979, 1810, 1942, 3063
PflFI	GACNNNGTC	1 cut(s)	2767
PflMI	CCANNNNNTGG	1 cut(s)	2869
PfoI	TCCNGGA	3 cut(s)	149, 2946, 3012
PleI	GAGTC	3 cut(s)	232, 1842, 2776
PpsI	GAGTC	3 cut(s)	232, 1842, 2776
PpuMI	RGGWCCY	1 cut(s)	994
PshBI	ATTAAT	1 cut(s)	2190
Psp124BI	GAGCTC	1 cut(s)	939
Psp5II	RGGWCCY	1 cut(s)	994
Psp6I	CCWGG	8 cut(s)	149, 990, 1703, 1937, 2246, 2715, 2862, 2946
PspFI	CCCAGC	1 cut(s)	214
PspGI	CCWGG	8 cut(s)	149, 990, 1703, 1937, 2246, 2715, 2862, 2946
PspN4I	GGNNCC	3 cut(s)	754, 1605, 2130
PspPI	GGNCC	1 cut(s)	994
PspPPI	RGGWCCY	1 cut(s)	994
PstI	CTGCAG	6 cut(s)	57, 914, 1015, 1114, 1555, 2071
PstNI	CAGNNNCTG	3 cut(s)	485, 997, 1636
PsuI	RGATCY	3 cut(s)	112, 2900, 2943
PsyI	GACNNNGTC	1 cut(s)	2767
PvuII	CAGCTG	3 cut(s)	397, 485, 1805
RsaI	GTAC	6 cut(s)	615, 776, 1889, 1902, 2462, 3048
RsaNI	GTAC	6 cut(s)	614, 775, 1888, 1901, 2461, 3047
RseI	CAYNNNNRTG	4 cut(s)	1183, 1212, 1409, 2121
SacI	GAGCTC	1 cut(s)	939
Sau96I	GGNCC	1 cut(s)	994
SchI	GAGTC	3 cut(s)	233, 1843, 2777
SduI	GDGCHC	4 cut(s)	939, 2353, 2601, 2741
SfaNI	GCATC	7 cut(s)	339, 571, 614, 1285, 1623, 2657, 2827
SfcI	CTRYAG	8 cut(s)	53, 720, 910, 966, 1011, 1110, 1551, 2067
Sfr274I	CTCGAG	2 cut(s)	1042, 1992
SfuI	TTCGAA	1 cut(s)	958
SinI	GGWCC	1 cut(s)	994
SlaI	CTCGAG	2 cut(s)	1042, 1992
SmiMI	CAYNNNNRTG	4 cut(s)	1183, 1212, 1409, 2121
SmlI	CTYRAG	3 cut(s)	1042, 1574, 1992
SmoI	CTYRAG	3 cut(s)	1042, 1574, 1992
SpeI	ACTAGT	1 cut(s)	2470
SphI	GCATGC	1 cut(s)	1659
SsiI	CCGC	5 cut(s)	307, 843, 1607, 2222, 2741
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	7 cut(s)	594, 735, 932, 1007, 2390, 2471, 2501
SstI	GAGCTC	1 cut(s)	939
StyI	CCWWGG	5 cut(s)	586, 609, 1336, 2109, 2362
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	3 cut(s)	316, 889, 2975
TaqI	TCGA	9 cut(s)	30, 180, 431, 521, 883, 958, 1043, 1883, 1993
TatI	WGTACW	2 cut(s)	1887, 1900
TauI	GCSGC	3 cut(s)	309, 1609, 2225
TfiI	GAWTC	7 cut(s)	27, 461, 494, 979, 1810, 1942, 3063
TscAI	CASTG	3 cut(s)	54, 1411, 2076
TseFI	GTSAC	3 cut(s)	525, 845, 1413
Tsp45I	GTSAC	3 cut(s)	525, 845, 1413
TspGWI	ACGGA	1 cut(s)	2780
TspRI	CASTG	3 cut(s)	54, 1411, 2076
Tth111I	GACNNNGTC	1 cut(s)	2767
Van91I	CCANNNNNTGG	1 cut(s)	2869
VpaK11BI	GGWCC	1 cut(s)	994
VspI	ATTAAT	1 cut(s)	2190
XagI	CCTNNNNNAGG	1 cut(s)	2720
XapI	RAATTY	4 cut(s)	427, 517, 1001, 1621
XbaI	TCTAGA	1 cut(s)	931
XceI	RCATGY	2 cut(s)	1072, 1659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1543
XhoI	CTCGAG	2 cut(s)	1042, 1992
XmnI	GAANNNNTTC	1 cut(s)	879
XspI	CTAG	7 cut(s)	594, 735, 932, 1007, 2390, 2471, 2501
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.