Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0016312

Physical Location & Seq

Genomic Coordinates Forward (+)

38834153 .. 38835421

Gene Structure 1269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0226100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCTTCCACCACCAAAGAAATAGCTTCAGAGATCCCCAATATCATCAAGCATTACAAAGATGGCACAGTCGAACGCTTCTTCGGTTTTCCGTACGTCCCCCCATCTCTTAACGACCCCCAAACCGGTGTCTCCTCCAAAGACATCACCATCTCACACAACCCTTTAGTCTCTGCTCGCCTCTACCTCCCTCGAAACAAATCTCAAAAACTTCCCATCTTGGTTTACTTCCACTGCGGCGGCTTTTGCTTAGAATCGGCCTTCTCGTCCATCCACCACCGCTACCTCAACCGCCTGGTCTCCGAAGCTCAAGTTCTCGCCGTCTCAGTCGAGTATAGGCTCGCCCCGGAAAGCCCACTTCCTGCTGCTTATGAAGATTGTTGGACCGCTCTTCAATGGGTTGCTTCTCACTCAATCCATCAAGATGGTACTTCTCACAAAGAGCCCTGGGTAGTCGATTTCGGGGACTTTGATAGGCTTTACATTGGTGGAGATAGTGCTGGTGGAAATCTTGCACATAACATTGCTATGAAGGCAGGGGCTGAGAGCTTGAATGGCGGTGTGAAAATTTTGGGGGCTATTGTGTCGCACTCGTATTTCTGGGGATCCAAGCCAATCGGGTCGGAGCCTAAAGGAGAAGACATTGAGAAGTCTCCGCAGTGTCTGTGTTGGAATATTGTTTACCCTGGTGCTGATGGAGGCATTGACAATCCATTGATTAATCCGATGGTTTCGGGTGCTCCGAGTTTGGCCGGGCTTGGGTGCTCTAGATTGCTTGTTTGTGTTGCAGGCAAGGATGAGCTGAGGGATCGAAGTGTCTGGTATTATGATTTGGTGAAGGAAAGTGGGTGGAAAGGAGAAGCGGAGTTGTTATTTGAAGTGGAAGAAGAGGGGCATTGCTTCCATATCTTGTATGAGAAAGAGACCGAGAATGTTGCAAAAATGATCAAACGCTTGGCTGCTTTTCTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009894 GO:0009987 GO:0010115 GO:0010150 GO:0010271 GO:0010380 GO:0010565 GO:0016020 GO:0016567 GO:0016740 GO:0019216 GO:0019222 GO:0019538 GO:0019747 GO:0019787 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0032446 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043455 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0046890 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051055 GO:0051171 GO:0051193 GO:0062012 GO:0062014 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0071944 GO:0080090 GO:0090056 GO:0090359 GO:0090693 GO:0099402 GO:0140096 GO:1901401 GO:1901404 GO:1901463 GO:1901564 GO:1902930 GO:1902931

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

324

Amino Acids

35.68

Weight (kDa)

5.64

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	61 - 188	3e-13	BD-FAE
COesterase	PF00135	62 - 134	8.9e-06	Carboxylesterase family
Abhydrolase_3	PF07859	74 - 302	1e-43	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016312)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22300 FvH4_4g22300
malus_domestica	MD13G1133000.v1.1
prunus_persica	Prupe.1G212500_v2.0.a1
pyrus_communis	pycom13g11540
rosa_chinensis	RchiOBHm_Chr4g0428541
rosa_laevigata	RLG00000007144
rosa_multiflora	Rmu_sc0002072.1_g000017
rosa_roxburghii	Rroxscaffold_5G00370240
rosa_rugosa	Rorug04G0226100
rosa_samantha	Rh4AG283600 Rh4BG289300 Rh4CG305200 Rh4DG286300
rosa_wichuraiana	Rw4G024620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	389
AciI	CCGC	8 cut(s)	237, 240, 280, 292, 387, 558, 656, 863
AclWI	GGATC	4 cut(s)	28, 600, 613, 816
AcoI	YGGCCR	1 cut(s)	750
AcsI	RAATTY	1 cut(s)	567
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	2 cut(s)	95, 430
AfiI	CCNNNNNNNGG	2 cut(s)	125, 759
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	395, 553, 878
AjnI	CCWGG	3 cut(s)	294, 446, 685
AluBI	AGCT	4 cut(s)	26, 308, 549, 802
AluI	AGCT	4 cut(s)	26, 308, 549, 802
Alw21I	GWGCWC	2 cut(s)	742, 767
Alw26I	GTCTC	6 cut(s)	136, 175, 304, 328, 657, 917
AlwI	GGATC	4 cut(s)	28, 600, 613, 816
AlwNI	CAGNNNCTG	2 cut(s)	542, 664
AoxI	GGCC	2 cut(s)	258, 750
ApeKI	GCWGC	2 cut(s)	365, 959
ApoI	RAATTY	1 cut(s)	567
AseI	ATTAAT	1 cut(s)	720
AsiGI	ACCGGT	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	384
AsuC2I	CCSGG	2 cut(s)	347, 754
AsuHPI	GGTGA	2 cut(s)	139, 847
AvaII	GGWCC	1 cut(s)	384
BamHI	GGATCC	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	645
Bbv12I	GWGCWC	2 cut(s)	742, 767
BbvCI	CCTCAGC	1 cut(s)	803
BbvI	GCAGC	2 cut(s)	352, 946
BccI	CCATC	9 cut(s)	56, 112, 158, 224, 278, 419, 426, 689, 721
BceAI	ACGGC	1 cut(s)	305
BcgI	CGANNNNNNTGC	2 cut(s)	917, 951
BciT130I	CCWGG	3 cut(s)	296, 448, 687
BclI	TGATCA	1 cut(s)	945
BcnI	CCSGG	2 cut(s)	347, 754
BcoDI	GTCTC	6 cut(s)	136, 175, 304, 328, 657, 917
BfaI	CTAG	2 cut(s)	768, 973
BisI	GCNGC	4 cut(s)	238, 241, 366, 960
BlsI	GCNGC	4 cut(s)	239, 242, 367, 961
Bme1390I	CCNGG	5 cut(s)	296, 347, 448, 687, 754
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	2 cut(s)	607, 627
BmrFI	CCNGG	5 cut(s)	296, 347, 448, 687, 754
BpiI	GAAGAC	1 cut(s)	645
Bpu10I	CCTNAGC	1 cut(s)	803
BpuEI	CTTGAG	1 cut(s)	294
BpuMI	CCSGG	2 cut(s)	347, 754
BsaI	GGTCTC	2 cut(s)	304, 917
BsaJI	CCNNGG	4 cut(s)	345, 446, 447, 685
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 759
Bse118I	RCCGGY	1 cut(s)	125
Bse3DI	GCAATG	2 cut(s)	522, 895
BseBI	CCWGG	3 cut(s)	296, 448, 687
BseDI	CCNNGG	4 cut(s)	345, 446, 447, 685
BseGI	GGATG	2 cut(s)	270, 802
BseLI	CCNNNNNNNGG	2 cut(s)	125, 759
BseMI	GCAATG	2 cut(s)	522, 895
BseMII	CTCAG	3 cut(s)	339, 534, 794
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	352, 946
BshFI	GGCC	2 cut(s)	260, 752
BshTI	ACCGGT	1 cut(s)	125
BsiHKAI	GWGCWC	2 cut(s)	742, 767
BsiSI	CCGG	3 cut(s)	126, 347, 753
BsiWI	CGTACG	1 cut(s)	93
BslFI	GGGAC	2 cut(s)	83, 479
BslI	CCNNNNNNNGG	2 cut(s)	125, 759
BsmAI	GTCTC	6 cut(s)	136, 175, 304, 328, 657, 917
BsmBI	CGTCTC	1 cut(s)	328
BsmFI	GGGAC	2 cut(s)	83, 479
BsnI	GGCC	2 cut(s)	260, 752
Bso31I	GGTCTC	2 cut(s)	304, 917
Bsp1286I	GDGCHC	3 cut(s)	447, 742, 767
Bsp143I	GATC	4 cut(s)	33, 605, 808, 945
BspACI	CCGC	8 cut(s)	237, 240, 280, 292, 387, 558, 656, 863
BspANI	GGCC	2 cut(s)	260, 752
BspCNI	CTCAG	3 cut(s)	338, 535, 795
BspLI	GGNNCC	2 cut(s)	607, 627
BspPI	GGATC	4 cut(s)	28, 600, 613, 816
BspQI	GCTCTTC	1 cut(s)	396
BspTNI	GGTCTC	2 cut(s)	304, 917
BsrBI	CCGCTC	1 cut(s)	389
BsrDI	GCAATG	2 cut(s)	522, 895
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	4 cut(s)	345, 446, 447, 685
BssMI	GATC	4 cut(s)	33, 605, 808, 945
Bst2UI	CCWGG	3 cut(s)	296, 448, 687
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	2 cut(s)	396, 882
BstC8I	GCNNGC	3 cut(s)	178, 342, 790
BstDEI	CTNAG	4 cut(s)	250, 325, 543, 803
BstF5I	GGATG	2 cut(s)	270, 802
BstKTI	GATC	4 cut(s)	36, 608, 811, 948
BstMAI	GTCTC	6 cut(s)	136, 175, 304, 328, 657, 917
BstMBI	GATC	4 cut(s)	33, 605, 808, 945
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 533, 555
BstNI	CCWGG	3 cut(s)	296, 448, 687
BstSCI	CCNGG	5 cut(s)	294, 345, 446, 685, 752
BstV1I	GCAGC	2 cut(s)	352, 946
BstV2I	GAAGAC	1 cut(s)	645
BstX2I	RGATCY	2 cut(s)	33, 605
BstXI	CCANNNNNNTGG	1 cut(s)	425
BstYI	RGATCY	2 cut(s)	33, 605
BsuRI	GGCC	2 cut(s)	260, 752
BtsCI	GGATG	2 cut(s)	270, 802
BtsI	GCAGTG	2 cut(s)	232, 665
BtsIMutI	CAGTG	2 cut(s)	232, 665
Cac8I	GCNNGC	3 cut(s)	178, 342, 790
CaiI	CAGNNNCTG	2 cut(s)	542, 664
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	94, 429
CspAI	ACCGGT	1 cut(s)	125
CviQI	GTAC	2 cut(s)	94, 429
DdeI	CTNAG	4 cut(s)	250, 325, 543, 803
DpnI	GATC	4 cut(s)	35, 607, 810, 947
DpnII	GATC	4 cut(s)	33, 605, 808, 945
EaeI	YGGCCR	1 cut(s)	750
Eam1104I	CTCTTC	2 cut(s)	396, 882
EarI	CTCTTC	2 cut(s)	396, 882
Eco24I	GRGCYC	1 cut(s)	447
Eco31I	GGTCTC	2 cut(s)	304, 917
Eco47I	GGWCC	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	12
EcoRII	CCWGG	3 cut(s)	294, 446, 685
EcoT38I	GRGCYC	1 cut(s)	447
Esp3I	CGTCTC	1 cut(s)	328
FaiI	YATR	7 cut(s)	336, 372, 519, 530, 828, 906, 915
FaqI	GGGAC	2 cut(s)	83, 479
FbaI	TGATCA	1 cut(s)	945
Fnu4HI	GCNGC	4 cut(s)	238, 241, 366, 960
FokI	GGATG	2 cut(s)	257, 809
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	4 cut(s)	238, 241, 366, 960
FspBI	CTAG	2 cut(s)	768, 973
GluI	GCNGC	4 cut(s)	238, 241, 366, 960
HaeIII	GGCC	2 cut(s)	260, 752
HapII	CCGG	3 cut(s)	126, 347, 753
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	3 cut(s)	126, 347, 753
HphI	GGTGA	2 cut(s)	139, 847
Hpy166II	GTNNAC	2 cut(s)	226, 682
Hpy188I	TCNGA	5 cut(s)	31, 304, 625, 726, 744
Hpy188III	TCNNGA	2 cut(s)	422, 768
Hpy8I	GTNNAC	2 cut(s)	226, 682
HpyAV	CCTTC	3 cut(s)	271, 526, 832
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	3 cut(s)	515, 788, 938
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 533, 555
HpyF3I	CTNAG	4 cut(s)	250, 325, 543, 803
HpySE526I	ACGT	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	945
Kzo9I	GATC	4 cut(s)	33, 605, 808, 945
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	625, 745
Lsp1109I	GCAGC	2 cut(s)	352, 946
MaeI	CTAG	2 cut(s)	768, 973
MaeII	ACGT	1 cut(s)	96
MalI	GATC	4 cut(s)	35, 607, 810, 947
MbiI	CCGCTC	1 cut(s)	389
MboI	GATC	4 cut(s)	33, 605, 808, 945
MboII	GAAGA	6 cut(s)	73, 383, 386, 650, 896, 899
MflI	RGATCY	2 cut(s)	33, 605
MhlI	GDGCHC	3 cut(s)	447, 742, 767
MluCI	AATT	1 cut(s)	567
MmeI	TCCRAC	3 cut(s)	362, 603, 650
MnlI	CCTC	8 cut(s)	145, 191, 197, 201, 296, 692, 798, 883
MseI	TTAA	2 cut(s)	111, 720
MslI	CAYNNNNRTG	2 cut(s)	423, 527
MspI	CCGG	3 cut(s)	126, 347, 753
MspR9I	CCNGG	5 cut(s)	296, 347, 448, 687, 754
MvaI	CCWGG	3 cut(s)	296, 448, 687
MwoI	GCNNNNNNNGC	3 cut(s)	246, 533, 555
NciI	CCSGG	2 cut(s)	347, 754
NdeII	GATC	4 cut(s)	33, 605, 808, 945
NlaIV	GGNNCC	2 cut(s)	607, 627
PasI	CCCWGGG	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	2 cut(s)	263, 740
PfeI	GAWTC	1 cut(s)	254
Pfl23II	CGTACG	1 cut(s)	93
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	4 cut(s)	239, 242, 367, 961
PshBI	ATTAAT	1 cut(s)	720
Psp6I	CCWGG	3 cut(s)	294, 446, 685
PspGI	CCWGG	3 cut(s)	294, 446, 685
PspLI	CGTACG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	607, 627
PspPI	GGNCC	1 cut(s)	384
PstNI	CAGNNNCTG	2 cut(s)	542, 664
PsuI	RGATCY	2 cut(s)	33, 605
RsaI	GTAC	2 cut(s)	95, 430
RsaNI	GTAC	2 cut(s)	94, 429
RseI	CAYNNNNRTG	2 cut(s)	423, 527
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	111, 720
SatI	GCNGC	4 cut(s)	238, 241, 366, 960
Sau3AI	GATC	4 cut(s)	33, 605, 808, 945
Sau96I	GGNCC	1 cut(s)	384
ScrFI	CCNGG	5 cut(s)	296, 347, 448, 687, 754
SduI	GDGCHC	3 cut(s)	447, 742, 767
SetI	ASST	7 cut(s)	28, 99, 189, 288, 310, 551, 804
SinI	GGWCC	1 cut(s)	384
SmiMI	CAYNNNNRTG	2 cut(s)	423, 527
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	1 cut(s)	567
SsiI	CCGC	8 cut(s)	237, 240, 280, 292, 387, 558, 656, 863
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	2 cut(s)	768, 973
StyD4I	CCNGG	5 cut(s)	294, 345, 446, 685, 752
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	5 cut(s)	72, 193, 330, 456, 811
TaqII	GACCGA	1 cut(s)	941
TasI	AATT	1 cut(s)	567
TauI	GCSGC	2 cut(s)	240, 243
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	111, 720
Tru9I	TTAA	2 cut(s)	111, 720
TscAI	CASTG	2 cut(s)	239, 665
TseI	GCWGC	2 cut(s)	365, 959
TspDTI	ATGAA	2 cut(s)	387, 545
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	2 cut(s)	239, 665
VpaK11BI	GGWCC	1 cut(s)	384
VspI	ATTAAT	1 cut(s)	720
XapI	RAATTY	1 cut(s)	567
XbaI	TCTAGA	1 cut(s)	767
XspI	CTAG	2 cut(s)	768, 973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.