pycom13g11720

SNARE associated Golgi protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014570
Physical Location & Seq
Forward (+)
8085068 .. 8086913
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 828 bp
ATGCTACGTATATTCCGTATCCCGCGGAGAGAGAGAGTTGACGAGAGTAGGGAAGAAAGGAAAATGGCGAAGAGGTGGTGGACAATCGGAGCTGCGGTGGCGATAATCGGAACAGGGAGGGAGCTGAGCAAGCACTACGGGTTGGACAAGGACGCTTTGCTCAAGGTGTTTTCTGAATTGTCCGATCGGCTGGGAGTATGGGCGATCCCACTGTACGTTGCGATCCACACTCTCACTCTCGCTCTCTGCCTACCCTACGCCGTCTTCTTCGAGGCCGCCGCTTCTATGCTCTTCGGCTTCTTCCCGGCTATCCTCTGCGTCTTTGCCGCCAAGCTGCTCGGCGCTTCCCTCTCGTTCTGGATTGGCAGGTTAATATTCAAGAGCTCAAGTTCAGCAATGGACTGGGTCCAGAAGAATAAGTACTTCAATGTCCTATCAAGAGGAGTTGAGCGAGATGGTTGGAGGTTTGTCCTACTTGCCCGGTTCTCGCCGATGCCATCTTACATTATAAATTACGCCCTTGCTGCTACAAAAGTTCGGTTTGTTGTGGATTTTCTGCTGCCAACGGTTATTGGATGCATGCCGATGATTTTACAAAACACATCCATTGGCAGCCTGGCTGGTGCTGCTGTTTCTTCGGCATCTGGCTCTCAGAAATCACAAATTTGGTCGTACCTTTTTCCTCTACTAGGAATTGTGTCAAGCATTCTTATTTCCTTGAGAATTAAGAAGTACTCTACTGAAAATTTAGTGGCTAAATCATCTCCAAGTCACGACTCTAGTAACATAGTTAGCTCTAATGACAAGGACCTGAAAAAGGGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

276

Amino Acids

30.62

Weight (kDa)

9.91

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 85 - 205 5.7e-25 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014570)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44960
fragaria_vesca FvH4_4g22120
malus_domestica MD13G1134400.v1.1 MD16G1145000.v1.1
prunus_persica Prupe.1G211100_v2.0.a1
pyrus_communis pycom13g11720 pycom16g11460
rosa_chinensis RchiOBHm_Chr4g0428371
rosa_laevigata RLG00000007157
rosa_multiflora Rmu_sc0004698.1_g000011
rosa_roxburghii Rroxscaffold_5G00370030
rosa_rugosa Rorug04G0225100
rosa_samantha Rh4AG282100 Rh4BG287700 Rh4CG303400 Rh4DG284700
rosa_wichuraiana Rw4G024480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 509
Acc36I ACCTGC 1 cut(s) 357
AccII CGCG 1 cut(s) 25
AciI CCGC 6 cut(s) 23, 25, 95, 276, 279, 327
AclWI GGATC 2 cut(s) 199, 217
AcsI RAATTY 2 cut(s) 663, 745
AfaI GTAC 4 cut(s) 215, 422, 674, 734
AfiI CCNNNNNNNGG 2 cut(s) 689, 817
AgsI TTSAA 2 cut(s) 379, 427
AjnI CCWGG 1 cut(s) 615
AluBI AGCT 5 cut(s) 92, 124, 334, 384, 795
AluI AGCT 5 cut(s) 92, 124, 334, 384, 795
Alw21I GWGCWC 1 cut(s) 386
AlwI GGATC 2 cut(s) 199, 217
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 6 cut(s) 92, 334, 524, 559, 612, 626
ApoI RAATTY 2 cut(s) 663, 745
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 2 cut(s) 406, 808
AsuC2I CCSGG 2 cut(s) 305, 481
AvaII GGWCC 2 cut(s) 406, 808
BanII GRGCYC 1 cut(s) 386
BarI GAAGNNNNNNTAC 2 cut(s) 404, 436
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 386
BbvI GCAGC 6 cut(s) 79, 321, 511, 546, 613, 624
BccI CCATC 2 cut(s) 449, 505
BceAI ACGGC 1 cut(s) 245
BciT130I CCWGG 1 cut(s) 617
BciVI GTATCC 1 cut(s) 29
BcnI CCSGG 2 cut(s) 305, 481
BfaI CTAG 2 cut(s) 689, 780
BfoI RGCGCY 1 cut(s) 345
BfuAI ACCTGC 1 cut(s) 357
BfuI GTATCC 1 cut(s) 29
BisI GCNGC 9 cut(s) 93, 276, 279, 327, 335, 525, 560, 613, 627
BlpI GCTNAGC 1 cut(s) 125
BlsI GCNGC 9 cut(s) 94, 277, 280, 328, 336, 526, 561, 614, 628
BmcAI AGTACT 2 cut(s) 422, 734
Bme1390I CCNGG 3 cut(s) 305, 481, 617
Bme18I GGWCC 2 cut(s) 406, 808
BmgT120I GGNCC 2 cut(s) 406, 808
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 3 cut(s) 305, 481, 617
BmrI ACTGGG 1 cut(s) 412
BmsI GCATC 3 cut(s) 483, 566, 650
BmuI ACTGGG 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 256
Bpu1102I GCTNAGC 1 cut(s) 125
BpuEI CTTGAG 3 cut(s) 146, 370, 739
BpuMI CCSGG 2 cut(s) 305, 481
BsaAI YACGTR 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 2 cut(s) 689, 817
Bse1I ACTGG 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 402
BseBI CCWGG 1 cut(s) 617
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 2 cut(s) 581, 602
BseLI CCNNNNNNNGG 2 cut(s) 689, 817
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 2 cut(s) 116, 665
BseNI ACTGG 1 cut(s) 407
BseRI GAGGAG 1 cut(s) 456
BseXI GCAGC 6 cut(s) 79, 321, 511, 546, 613, 624
BseYI CCCAGC 1 cut(s) 190
Bsh1236I CGCG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 1 cut(s) 275
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 386
BsiSI CCGG 2 cut(s) 305, 481
BslI CCNNNNNNNGG 2 cut(s) 689, 817
BsmI GAATGC 1 cut(s) 705
BsnI GGCC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 3 cut(s) 184, 204, 222
Bsp1720I GCTNAGC 1 cut(s) 125
BspACI CCGC 6 cut(s) 23, 25, 95, 276, 279, 327
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 2 cut(s) 117, 664
BspFNI CGCG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 407
BspMI ACCTGC 1 cut(s) 357
BspPI GGATC 2 cut(s) 199, 217
BspQI GCTCTTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 402
BsrI ACTGG 1 cut(s) 407
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 3 cut(s) 184, 204, 222
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 2 cut(s) 213, 568
Bst6I CTCTTC 2 cut(s) 65, 296
BstBAI YACGTR 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 131, 581
BstDEI CTNAG 2 cut(s) 125, 651
BstDSI CCRYGG 1 cut(s) 23
BstENI CCTNNNNNAGG 2 cut(s) 687, 815
BstF5I GGATG 2 cut(s) 581, 602
BstFNI CGCG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 3 cut(s) 187, 207, 225
BstMBI GATC 3 cut(s) 184, 204, 222
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 4 cut(s) 98, 130, 524, 626
BstNI CCWGG 1 cut(s) 617
BstNSI RCATGY 1 cut(s) 583
BstSCI CCNGG 3 cut(s) 303, 479, 615
BstSNI TACGTA 1 cut(s) 8
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 6 cut(s) 79, 321, 511, 546, 613, 624
BstV2I GAAGAC 1 cut(s) 256
BsuI GTATCC 1 cut(s) 29
BsuRI GGCC 1 cut(s) 275
BtgI CCRYGG 1 cut(s) 23
BtsCI GGATG 2 cut(s) 581, 602
BtsIMutI CAGTG 1 cut(s) 209
BveI ACCTGC 1 cut(s) 357
Cac8I GCNNGC 2 cut(s) 131, 581
CfoI GCGC 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 406, 808
Cfr42I CCGCGG 1 cut(s) 26
CseI GACGC 2 cut(s) 161, 307
Csp6I GTAC 4 cut(s) 214, 421, 673, 733
CviAII CATG 1 cut(s) 580
CviQI GTAC 4 cut(s) 214, 421, 673, 733
DdeI CTNAG 2 cut(s) 125, 651
DpnI GATC 3 cut(s) 186, 206, 224
DpnII GATC 3 cut(s) 184, 204, 222
Eam1104I CTCTTC 2 cut(s) 65, 296
EarI CTCTTC 2 cut(s) 65, 296
Ecl136II GAGCTC 1 cut(s) 384
Eco105I TACGTA 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 386
Eco47I GGWCC 2 cut(s) 406, 808
Eco53kI GAGCTC 1 cut(s) 384
EcoICRI GAGCTC 1 cut(s) 384
EcoNI CCTNNNNNAGG 2 cut(s) 687, 815
EcoO109I RGGNCCY 1 cut(s) 808
EcoRII CCWGG 1 cut(s) 615
EcoT22I ATGCAT 1 cut(s) 581
EcoT38I GRGCYC 1 cut(s) 386
FaeI CATG 1 cut(s) 583
FaiI YATR 6 cut(s) 11, 199, 287, 509, 581, 788
FatI CATG 1 cut(s) 579
FauI CCCGC 1 cut(s) 30
Fnu4HI GCNGC 9 cut(s) 93, 276, 279, 327, 335, 525, 560, 613, 627
FokI GGATG 2 cut(s) 588, 589
FriOI GRGCYC 1 cut(s) 386
Fsp4HI GCNGC 9 cut(s) 93, 276, 279, 327, 335, 525, 560, 613, 627
FspBI CTAG 2 cut(s) 689, 780
GlaI GCGC 1 cut(s) 343
GluI GCNGC 9 cut(s) 93, 276, 279, 327, 335, 525, 560, 613, 627
GsaI CCCAGC 1 cut(s) 194
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 1 cut(s) 275
HapII CCGG 2 cut(s) 305, 481
HgaI GACGC 2 cut(s) 161, 307
HhaI GCGC 1 cut(s) 344
Hin1II CATG 1 cut(s) 583
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 1 cut(s) 776
HpaII CCGG 2 cut(s) 305, 481
Hpy166II GTNNAC 2 cut(s) 40, 81
Hpy188I TCNGA 5 cut(s) 89, 110, 175, 184, 654
Hpy188III TCNNGA 5 cut(s) 358, 379, 409, 438, 773
Hpy8I GTNNAC 2 cut(s) 40, 81
HpyCH4III ACNGT 2 cut(s) 213, 568
HpyCH4IV ACGT 2 cut(s) 7, 216
HpyCH4V TGCA 1 cut(s) 579
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 130, 524, 626
HpyF3I CTNAG 2 cut(s) 125, 651
HpySE526I ACGT 2 cut(s) 7, 216
Hsp92II CATG 1 cut(s) 583
HspAI GCGC 1 cut(s) 342
KspI CCGCGG 1 cut(s) 26
Kzo9I GATC 3 cut(s) 184, 204, 222
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 2 cut(s) 89, 121
Lsp1109I GCAGC 6 cut(s) 79, 321, 511, 546, 613, 624
LweI GCATC 3 cut(s) 483, 566, 650
MaeI CTAG 2 cut(s) 689, 780
MaeII ACGT 2 cut(s) 7, 216
MaeIII GTNAC 2 cut(s) 770, 782
MalI GATC 3 cut(s) 186, 206, 224
MboI GATC 3 cut(s) 184, 204, 222
MboII GAAGA 8 cut(s) 65, 82, 256, 259, 283, 292, 424, 627
MhlI GDGCHC 1 cut(s) 386
MluCI AATT 6 cut(s) 176, 511, 663, 693, 723, 745
MlyI GAGTC 1 cut(s) 770
MmeI TCCRAC 2 cut(s) 123, 440
MnlI CCTC 8 cut(s) 66, 111, 265, 323, 359, 434, 456, 693
Mph1103I ATGCAT 1 cut(s) 581
MseI TTAA 2 cut(s) 371, 726
MslI CAYNNNNRTG 1 cut(s) 584
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 2 cut(s) 305, 481
MspR9I CCNGG 3 cut(s) 305, 481, 617
Mva1269I GAATGC 1 cut(s) 705
MvaI CCWGG 1 cut(s) 617
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 4 cut(s) 98, 130, 524, 626
NciI CCSGG 2 cut(s) 305, 481
NdeII GATC 3 cut(s) 184, 204, 222
NlaIII CATG 1 cut(s) 583
NlaIV GGNNCC 1 cut(s) 407
NmeAIII GCCGAG 1 cut(s) 318
NmuCI GTSAC 1 cut(s) 770
NsiI ATGCAT 1 cut(s) 581
NspI RCATGY 1 cut(s) 583
PaeI GCATGC 1 cut(s) 583
PciSI GCTCTTC 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PctI GAATGC 1 cut(s) 705
PflFI GACNNNGTC 1 cut(s) 404
PkrI GCNGC 9 cut(s) 94, 277, 280, 328, 336, 526, 561, 614, 628
Ple19I CGATCG 1 cut(s) 187
PleI GAGTC 1 cut(s) 770
PpsI GAGTC 1 cut(s) 770
Ppu21I YACGTR 1 cut(s) 8
PpuMI RGGWCCY 1 cut(s) 808
PsiI TTATAA 1 cut(s) 509
Psp124BI GAGCTC 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 808
Psp6I CCWGG 1 cut(s) 615
PspFI CCCAGC 1 cut(s) 190
PspGI CCWGG 1 cut(s) 615
PspN4I GGNNCC 1 cut(s) 407
PspPI GGNCC 2 cut(s) 406, 808
PspPPI RGGWCCY 1 cut(s) 808
PsyI GACNNNGTC 1 cut(s) 404
PvuI CGATCG 1 cut(s) 187
RsaI GTAC 4 cut(s) 215, 422, 674, 734
RsaNI GTAC 4 cut(s) 214, 421, 673, 733
RseI CAYNNNNRTG 1 cut(s) 584
SacI GAGCTC 1 cut(s) 386
SacII CCGCGG 1 cut(s) 26
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 2 cut(s) 371, 726
SatI GCNGC 9 cut(s) 93, 276, 279, 327, 335, 525, 560, 613, 627
Sau3AI GATC 3 cut(s) 184, 204, 222
Sau96I GGNCC 2 cut(s) 406, 808
ScaI AGTACT 2 cut(s) 422, 734
SchI GAGTC 1 cut(s) 770
ScrFI CCNGG 3 cut(s) 305, 481, 617
SduI GDGCHC 1 cut(s) 386
SfaNI GCATC 3 cut(s) 483, 566, 650
Sfr303I CCGCGG 1 cut(s) 26
SgrBI CCGCGG 1 cut(s) 26
SinI GGWCC 2 cut(s) 406, 808
SmiMI CAYNNNNRTG 1 cut(s) 584
SmlI CTYRAG 3 cut(s) 161, 385, 718
SmoI CTYRAG 3 cut(s) 161, 385, 718
SnaBI TACGTA 1 cut(s) 8
SphI GCATGC 1 cut(s) 583
Sse9I AATT 6 cut(s) 176, 511, 663, 693, 723, 745
SsiI CCGC 6 cut(s) 23, 25, 95, 276, 279, 327
SspI AATATT 1 cut(s) 375
SspMI CTAG 2 cut(s) 689, 780
SstI GAGCTC 1 cut(s) 386
StyD4I CCNGG 3 cut(s) 303, 479, 615
TaaI ACNGT 2 cut(s) 213, 568
TaiI ACGT 2 cut(s) 10, 219
TaqI TCGA 1 cut(s) 270
TasI AATT 6 cut(s) 176, 511, 663, 693, 723, 745
TatI WGTACW 2 cut(s) 420, 732
TauI GCSGC 3 cut(s) 278, 281, 329
Tru1I TTAA 2 cut(s) 371, 726
Tru9I TTAA 2 cut(s) 371, 726
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 770
TseI GCWGC 6 cut(s) 92, 334, 524, 559, 612, 626
Tsp45I GTSAC 1 cut(s) 770
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 1 cut(s) 216
Tth111I GACNNNGTC 1 cut(s) 404
VpaK11BI GGWCC 2 cut(s) 406, 808
XagI CCTNNNNNAGG 2 cut(s) 687, 815
XapI RAATTY 2 cut(s) 663, 745
XceI RCATGY 1 cut(s) 583
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XspI CTAG 2 cut(s) 689, 780
ZrmI AGTACT 2 cut(s) 422, 734
Zsp2I ATGCAT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.