Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007176

Physical Location & Seq

Genomic Coordinates Forward (+)

8895243 .. 8897296

Gene Structure 2054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGGCGATGGCGATGGCGAGCTTGGCGCGGCGGAAGGCCTACCTTCTCTCTAGAAACTTGTCCAACACGTCATCGGAGGCCGTCAGGTACTCCTCCCTCACCTCCTTCTCCAGGGGCTTCGCCTCCGCCGGATCTGACGACAACGACGTCGTCGTCGTTGGCGGCGGTCCCGGCGGTTACGTTGCGGCAAACAAGGCCGCGCAGCTCGGCCTTAAGACCACCTGCATCGAGAAGCGCGGTGCTCTTGGCGGCACCTGCCTCAACGTCGGGTGCATACCCTCCAAGGCGCTTCTTCATTCCTCTCACATGTACTACGAAGCTAAGCATGCGTTTTCGCACCACGGAGTGAAGTTCTCCGATGTCGAAATAGATTTACCTGCCATGATGTCCCAGAAAGACAAAGCTGTTTCTAATCTTACACGAGGAATTGAAGGGCTGTTCAAGAAGAACAAGGTCACTTATGTTAAAGGTTATGGAAAGTTCATCTCCCCGTCTGAAATTTCAGTGGACACCATTGATGGCGAGAATACAGTTGTGAAGGGAAAGAATATCATAATTGCCACCGGTTCTGATGTCAAGTCTTTACCCGGAATTACCATTGATGAGAAGAAGATAGTGTCATCCACAGGAGCTCTGGCTTTGCAGGAAATCCCAAAGAAACTTGTGGTGGTTGGAGCAGGATATATCGGCCTAGAGATGGGCTCGGTGTGGGGCAGACTTGGTTCTGAGGTAACTGTTGTTGAGTTTGGTCCTGATATCGTCCCATCAATGGACTCGGAAATCCGCAAGCAATTTCAGCGTTCCCTTGAGAAGCAAGGGATGAAGTTCATGCTCAAAACAAAGGTGGTTGGAGTTGATACCTCTGGAGATGGTGTGAAGTTGACCCTTGAACCAGCATCTGGTGGCGACCAGACTTCCTTTGAAGCTGATGTCGTTCTTGTATCTGCTGGTAGGGTTCCATTCACTTCCGGGCTTGATTTGGACAAGATAGGAGTTGAAATGGACAAGGGAGGGAGAATTTTAGTGAATGAGAGGTTTTCTACAAATGTCTCGGGTGTTCATGCAATCGGAGATGTTATTCCTGGACCTATGTTGGCTCATAAGGCAGAAGAGGATGGGGTTGCATGCGTGGAGTTCCTAGCTGGTAAGGTTGGCCATGTGGACTATGACAAGGTCCCTGGGGTCGTCTACACGCACCCTGAGGTCGCGTCTGTTGGAAAGACTGAGGAACAAGTGAAGGCCTCTGGTGTTGCGTACCGAGTTGGAAAGTTCCCTTTCATGGCAAACAGCAGAGCCAAGGCAATAGACAATGCTGAAGGACTCGTCAAGATATTGGCCGAGAAGGAAACAGATAAGATATTGGGAGTTCATATCATGGCATCTAATGCTGGAGAGCTCATTCACGAGGCAGCCATAGCCTTGCAGTATGATGCATCGAGCGAGGACATTGCACGAGTTTGCCATGCACATCCGACCATGAGCGAGGCGTTGAAGGAAGCTGCCATGGCTACTTATGACAAGCCCATTCACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004148 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005759 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009507 GO:0009536 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0017076 GO:0019866 GO:0030554 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0050897 GO:0055114 GO:0070013 GO:0070469 GO:0097159 GO:0097367 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901265 GO:1901363 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00260 ko00280 ko00620 ko00630 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00260 map00280 map00620 map00630 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Pyr_redox_2 Pyr_redox_dim

Protein Analysis

512

Amino Acids

54.14

Weight (kDa)

6.55

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	49 - 373	9.9e-75	Pyridine nucleotide-disulphide oxidoreductase
FAD_oxidored	PF12831	49 - 87	8.2e-10	FAD dependent oxidoreductase
GIDA	PF01134	49 - 194	2.3e-09	Glucose inhibited division protein A
FAD_binding_2	PF00890	49 - 85	9e-06	FAD binding domain
NAD_binding_8	PF13450	52 - 87	9.9e-06	NAD(P)-binding Rossmann-like domain
Pyr_redox_3	PF13738	172 - 357	3.1e-08	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	220 - 296	2.6e-23	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim	PF02852	392 - 501	2.4e-41	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48030 AT1G48030 AT1G48030 AT1G48030 AT1G48030 AT3G17240 AT3G17240
fragaria_vesca	FvH4_4g20900
malus_domestica	MD13G1147400.v1.1 MD16G1145800.v1.1
prunus_persica	Prupe.1G110900_v2.0.a1 Prupe.1G110900_v2.0.a1
pyrus_communis	pycom13g12690 pycom16g12500
rosa_chinensis	RchiOBHm_Chr4g0426331
rosa_laevigata	RLG00000007302
rosa_multiflora	Rmu_sc0000730.1_g000046 Rmu_sc0007942.1_g000011
rosa_roxburghii	Rroxscaffold_5G00368340
rosa_rugosa	Rorug04G0210200
rosa_samantha	Rh4AG267200 Rh4BG273100 Rh4CG287300 Rh4DG269800
rosa_wichuraiana	Rw4G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	230, 263
AasI	GACNNNNNNGTC	2 cut(s)	146, 152
AatII	GACGTC	1 cut(s)	150
Acc36I	ACCTGC	3 cut(s)	230, 263, 385
AccB1I	GGYRCC	1 cut(s)	251
AccB7I	CCANNNNNTGG	1 cut(s)	899
AccI	GTMKAC	1 cut(s)	1188
AccII	CGCG	4 cut(s)	28, 200, 237, 1208
AclWI	GGATC	1 cut(s)	139
AcoI	YGGCCR	2 cut(s)	1153, 1335
AcsI	RAATTY	2 cut(s)	498, 1017
AcuI	CTGAAG	1 cut(s)	1335
AcyI	GRCGYC	1 cut(s)	147
AdeI	CACNNNGTG	1 cut(s)	346
AfaI	GTAC	3 cut(s)	89, 311, 1256
AfiI	CCNNNNNNNGG	5 cut(s)	111, 697, 769, 899, 1279
AflII	CTTAAG	1 cut(s)	212
AflIII	ACRYGT	2 cut(s)	66, 306
AgeI	ACCGGT	1 cut(s)	563
AgsI	TTSAA	6 cut(s)	431, 442, 890, 923, 998, 1492
AjiI	CACGTC	1 cut(s)	69
AjnI	CCWGG	3 cut(s)	110, 1081, 1177
AluBI	AGCT	9 cut(s)	21, 205, 320, 404, 632, 926, 1142, 1396, 1499
AluI	AGCT	9 cut(s)	21, 205, 320, 404, 632, 926, 1142, 1396, 1499
Alw21I	GWGCWC	3 cut(s)	244, 634, 1398
Alw26I	GTCTC	1 cut(s)	1054
AlwI	GGATC	1 cut(s)	139
AlwNI	CAGNNNCTG	1 cut(s)	899
Ama87I	CYCGRG	1 cut(s)	1051
AoxI	GGCC	8 cut(s)	36, 78, 195, 208, 688, 1153, 1239, 1335
ApeKI	GCWGC	3 cut(s)	202, 1409, 1499
ApoI	RAATTY	2 cut(s)	498, 1017
AsiGI	ACCGGT	1 cut(s)	563
AspLEI	GCGC	4 cut(s)	28, 202, 237, 289
AspS9I	GGNCC	4 cut(s)	167, 749, 1085, 1174
AsuC2I	CCSGG	3 cut(s)	171, 588, 970
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	1051
AvaII	GGWCC	4 cut(s)	167, 749, 1085, 1174
AxyI	CCTNAGG	1 cut(s)	1200
BalI	TGGCCA	1 cut(s)	1155
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	3 cut(s)	634, 704, 1398
BauI	CACGAG	3 cut(s)	420, 1403, 1452
Bbv12I	GWGCWC	3 cut(s)	244, 634, 1398
BbvI	GCAGC	3 cut(s)	214, 1421, 1486
BccI	CCATC	6 cut(s)	7, 512, 691, 772, 863, 1109
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	1430, 1464
BciT130I	CCWGG	3 cut(s)	112, 1083, 1179
BcnI	CCSGG	3 cut(s)	171, 588, 970
BcoDI	GTCTC	1 cut(s)	1054
BfaI	CTAG	4 cut(s)	51, 692, 1139, 1534
BfoI	RGCGCY	1 cut(s)	290
BfrI	CTTAAG	1 cut(s)	212
BfuAI	ACCTGC	3 cut(s)	230, 263, 385
BisI	GCNGC	8 cut(s)	29, 163, 186, 198, 203, 250, 1410, 1500
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	8 cut(s)	30, 164, 187, 199, 204, 251, 1411, 1501
Bme1390I	CCNGG	6 cut(s)	112, 171, 588, 970, 1083, 1179
Bme18I	GGWCC	4 cut(s)	167, 749, 1085, 1174
BmeT110I	CYCGRG	1 cut(s)	1051
BmgBI	CACGTC	1 cut(s)	69
BmgT120I	GGNCC	4 cut(s)	167, 749, 1085, 1174
BmiI	GGNNCC	4 cut(s)	169, 253, 957, 1176
BmrFI	CCNGG	6 cut(s)	112, 171, 588, 970, 1083, 1179
BmsI	GCATC	5 cut(s)	234, 905, 1388, 1420, 1442
BplI	GAGNNNNNCTC	2 cut(s)	686, 718
BpmI	CTGGAG	3 cut(s)	94, 885, 1410
Bpu1102I	GCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	827
BpuMI	CCSGG	3 cut(s)	171, 588, 970
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	7 cut(s)	111, 282, 340, 1177, 1178, 1296, 1503
BsaWI	WCCGGW	1 cut(s)	563
BsaXI	ACNNNNNCTCC	2 cut(s)	858, 888
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 697, 769, 899, 1279
Bse118I	RCCGGY	1 cut(s)	563
Bse21I	CCTNAGG	1 cut(s)	1200
Bse3DI	GCAATG	1 cut(s)	1446
BseBI	CCWGG	3 cut(s)	112, 1083, 1179
BseDI	CCNNGG	7 cut(s)	111, 282, 340, 1177, 1178, 1296, 1503
BseGI	GGATG	4 cut(s)	620, 825, 1120, 1468
BseLI	CCNNNNNNNGG	5 cut(s)	111, 697, 769, 899, 1279
BseMI	GCAATG	1 cut(s)	1446
BseMII	CTCAG	3 cut(s)	717, 1191, 1215
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	3 cut(s)	214, 1421, 1486
Bsh1236I	CGCG	4 cut(s)	28, 200, 237, 1208
BshFI	GGCC	8 cut(s)	38, 80, 197, 210, 690, 1155, 1241, 1337
BshNI	GGYRCC	1 cut(s)	251
BshTI	ACCGGT	1 cut(s)	563
BsiHKAI	GWGCWC	3 cut(s)	244, 634, 1398
BsiHKCI	CYCGRG	1 cut(s)	1051
BsiSI	CCGG	5 cut(s)	129, 171, 564, 588, 969
BslFI	GGGAC	4 cut(s)	153, 373, 746, 1160
BslI	CCNNNNNNNGG	5 cut(s)	111, 697, 769, 899, 1279
BsmAI	GTCTC	1 cut(s)	1054
BsmFI	GGGAC	4 cut(s)	153, 373, 746, 1160
BsnI	GGCC	8 cut(s)	38, 80, 197, 210, 690, 1155, 1241, 1337
BsoBI	CYCGRG	1 cut(s)	1051
Bsp1286I	GDGCHC	4 cut(s)	244, 634, 704, 1398
Bsp143I	GATC	1 cut(s)	131
Bsp1720I	GCTNAGC	1 cut(s)	321
Bsp19I	CCATGG	1 cut(s)	1503
BspANI	GGCC	8 cut(s)	38, 80, 197, 210, 690, 1155, 1241, 1337
BspCNI	CTCAG	3 cut(s)	718, 1192, 1216
BspFNI	CGCG	4 cut(s)	28, 200, 237, 1208
BspLI	GGNNCC	4 cut(s)	169, 253, 957, 1176
BspMI	ACCTGC	3 cut(s)	230, 263, 385
BspPI	GGATC	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	251
BspTI	CTTAAG	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	1446
BsrFI	RCCGGY	1 cut(s)	563
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	7 cut(s)	111, 282, 340, 1177, 1178, 1296, 1503
BssMI	GATC	1 cut(s)	131
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	3 cut(s)	420, 1403, 1452
BssT1I	CCWWGG	3 cut(s)	282, 1296, 1503
Bst2BI	CACGAG	3 cut(s)	420, 1403, 1452
Bst2UI	CCWGG	3 cut(s)	112, 1083, 1179
Bst4CI	ACNGT	2 cut(s)	532, 736
Bst6I	CTCTTC	1 cut(s)	1104
BstACI	GRCGYC	1 cut(s)	147
BstAFI	CTTAAG	1 cut(s)	212
BstAPI	GCANNNNNTGC	1 cut(s)	1385
BstC8I	GCNNGC	4 cut(s)	19, 327, 788, 1126
BstDEI	CTNAG	4 cut(s)	321, 726, 1200, 1224
BstDSI	CCRYGG	2 cut(s)	340, 1503
BstENI	CCTNNNNNAGG	1 cut(s)	109
BstF5I	GGATG	4 cut(s)	620, 825, 1120, 1468
BstFNI	CGCG	4 cut(s)	28, 200, 237, 1208
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	4 cut(s)	28, 202, 237, 289
BstKTI	GATC	1 cut(s)	134
BstMAI	GTCTC	1 cut(s)	1054
BstMBI	GATC	1 cut(s)	131
BstNI	CCWGG	3 cut(s)	112, 1083, 1179
BstNSI	RCATGY	3 cut(s)	310, 329, 1128
BstSCI	CCNGG	6 cut(s)	110, 169, 586, 968, 1081, 1177
BstUI	CGCG	4 cut(s)	28, 200, 237, 1208
BstV1I	GCAGC	3 cut(s)	214, 1421, 1486
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
Bsu36I	CCTNAGG	1 cut(s)	1200
BsuRI	GGCC	8 cut(s)	38, 80, 197, 210, 690, 1155, 1241, 1337
BtgI	CCRYGG	2 cut(s)	340, 1503
BtgZI	GCGATG	2 cut(s)	20, 26
BtrI	CACGTC	1 cut(s)	69
BtsCI	GGATG	4 cut(s)	620, 825, 1120, 1468
BtsIMutI	CAGTG	1 cut(s)	510
BveI	ACCTGC	3 cut(s)	230, 263, 385
Cac8I	GCNNGC	4 cut(s)	19, 327, 788, 1126
CaiI	CAGNNNCTG	1 cut(s)	899
CfoI	GCGC	4 cut(s)	28, 202, 237, 289
Cfr10I	RCCGGY	1 cut(s)	563
Cfr13I	GGNCC	4 cut(s)	167, 749, 1085, 1174
CseI	GACGC	1 cut(s)	1197
Csp6I	GTAC	3 cut(s)	88, 310, 1255
CspAI	ACCGGT	1 cut(s)	563
CviQI	GTAC	3 cut(s)	88, 310, 1255
DdeI	CTNAG	4 cut(s)	321, 726, 1200, 1224
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
DraIII	CACNNNGTG	1 cut(s)	346
DrdI	GACNNNNNNGTC	2 cut(s)	146, 152
DseDI	GACNNNNNNGTC	2 cut(s)	146, 152
EaeI	YGGCCR	2 cut(s)	1153, 1335
Eam1104I	CTCTTC	1 cut(s)	1104
EarI	CTCTTC	1 cut(s)	1104
EciI	GGCGGA	2 cut(s)	46, 115
Ecl136II	GAGCTC	2 cut(s)	632, 1396
Eco130I	CCWWGG	3 cut(s)	282, 1296, 1503
Eco147I	AGGCCT	2 cut(s)	38, 1241
Eco24I	GRGCYC	3 cut(s)	634, 704, 1398
Eco32I	GATATC	1 cut(s)	757
Eco47I	GGWCC	4 cut(s)	167, 749, 1085, 1174
Eco53kI	GAGCTC	2 cut(s)	632, 1396
Eco57I	CTGAAG	1 cut(s)	1335
Eco81I	CCTNAGG	1 cut(s)	1200
Eco88I	CYCGRG	1 cut(s)	1051
EcoICRI	GAGCTC	2 cut(s)	632, 1396
EcoNI	CCTNNNNNAGG	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	1174
EcoRII	CCWGG	3 cut(s)	110, 1081, 1177
EcoRV	GATATC	1 cut(s)	757
EcoT14I	CCWWGG	3 cut(s)	282, 1296, 1503
EcoT22I	ATGCAT	1 cut(s)	1435
EcoT38I	GRGCYC	3 cut(s)	634, 704, 1398
ErhI	CCWWGG	3 cut(s)	282, 1296, 1503
FaqI	GGGAC	4 cut(s)	153, 373, 746, 1160
FblI	GTMKAC	1 cut(s)	1188
Fnu4HI	GCNGC	8 cut(s)	29, 163, 186, 198, 203, 250, 1410, 1500
FokI	GGATG	4 cut(s)	607, 832, 1127, 1455
FriOI	GRGCYC	3 cut(s)	634, 704, 1398
Fsp4HI	GCNGC	8 cut(s)	29, 163, 186, 198, 203, 250, 1410, 1500
FspBI	CTAG	4 cut(s)	51, 692, 1139, 1534
GlaI	GCGC	4 cut(s)	27, 201, 236, 288
GluI	GCNGC	8 cut(s)	29, 163, 186, 198, 203, 250, 1410, 1500
GsuI	CTGGAG	3 cut(s)	94, 885, 1410
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	8 cut(s)	38, 80, 197, 210, 690, 1155, 1241, 1337
HapII	CCGG	5 cut(s)	129, 171, 564, 588, 969
HgaI	GACGC	1 cut(s)	1197
HhaI	GCGC	4 cut(s)	28, 202, 237, 289
Hin1I	GRCGYC	1 cut(s)	147
Hin6I	GCGC	4 cut(s)	26, 200, 235, 287
HinP1I	GCGC	4 cut(s)	26, 200, 235, 287
HincII	GTYRAC	1 cut(s)	882
HindII	GTYRAC	1 cut(s)	882
HinfI	GANTC	2 cut(s)	773, 1320
HpaII	CCGG	5 cut(s)	129, 171, 564, 588, 969
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	4 cut(s)	508, 882, 1162, 1189
Hpy188I	TCNGA	9 cut(s)	76, 136, 358, 496, 571, 727, 778, 1070, 1473
Hpy188III	TCNNGA	7 cut(s)	51, 229, 442, 752, 864, 1327, 1403
Hpy8I	GTNNAC	4 cut(s)	508, 882, 1162, 1189
Hpy99I	CGWCG	5 cut(s)	149, 152, 155, 158, 269
HpyAV	CCTTC	9 cut(s)	28, 53, 115, 425, 532, 1231, 1310, 1336, 1486
HpyCH4III	ACNGT	2 cut(s)	532, 736
HpyCH4IV	ACGT	4 cut(s)	68, 147, 180, 264
HpyCH4V	TGCA	9 cut(s)	225, 273, 643, 1064, 1124, 1423, 1433, 1451, 1466
HpyF3I	CTNAG	4 cut(s)	321, 726, 1200, 1224
HpySE526I	ACGT	4 cut(s)	68, 147, 180, 264
Hsp92I	GRCGYC	1 cut(s)	147
HspAI	GCGC	4 cut(s)	26, 200, 235, 287
Kzo9I	GATC	1 cut(s)	131
LmnI	GCTCC	2 cut(s)	629, 674
Lsp1109I	GCAGC	3 cut(s)	214, 1421, 1486
LweI	GCATC	5 cut(s)	234, 905, 1388, 1420, 1442
MaeI	CTAG	4 cut(s)	51, 692, 1139, 1534
MaeII	ACGT	4 cut(s)	68, 147, 180, 264
MaeIII	GTNAC	3 cut(s)	176, 454, 730
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	5 cut(s)	284, 457, 619, 622, 1121
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	4 cut(s)	244, 634, 704, 1398
MlsI	TGGCCA	1 cut(s)	1155
MluCI	AATT	6 cut(s)	426, 498, 555, 591, 791, 1017
MluNI	TGGCCA	1 cut(s)	1155
MlyI	GAGTC	2 cut(s)	767, 1314
MmeI	TCCRAC	6 cut(s)	87, 652, 829, 1195, 1243, 1496
Mox20I	TGGCCA	1 cut(s)	1155
Mph1103I	ATGCAT	1 cut(s)	1435
MscI	TGGCCA	1 cut(s)	1155
MseI	TTAA	2 cut(s)	213, 465
Msp20I	TGGCCA	1 cut(s)	1155
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	5 cut(s)	129, 171, 564, 588, 969
MspR9I	CCNGG	6 cut(s)	112, 171, 588, 970, 1083, 1179
MvaI	CCWGG	3 cut(s)	112, 1083, 1179
MvnI	CGCG	4 cut(s)	28, 200, 237, 1208
NciI	CCSGG	3 cut(s)	171, 588, 970
NcoI	CCATGG	1 cut(s)	1503
NdeII	GATC	1 cut(s)	131
NlaIV	GGNNCC	4 cut(s)	169, 253, 957, 1176
NmeAIII	GCCGAG	2 cut(s)	186, 1363
NmuCI	GTSAC	1 cut(s)	454
NsiI	ATGCAT	1 cut(s)	1435
NspI	RCATGY	3 cut(s)	310, 329, 1128
PaeI	GCATGC	2 cut(s)	329, 1128
PaqCI	CACCTGC	2 cut(s)	230, 263
PasI	CCCWGGG	1 cut(s)	1178
PceI	AGGCCT	2 cut(s)	38, 1241
PciI	ACATGT	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 150, 153
PflFI	GACNNNGTC	2 cut(s)	149, 1172
PflMI	CCANNNNNTGG	1 cut(s)	899
PfoI	TCCNGGA	1 cut(s)	1081
PinAI	ACCGGT	1 cut(s)	563
PkrI	GCNGC	8 cut(s)	30, 164, 187, 199, 204, 251, 1411, 1501
PleI	GAGTC	2 cut(s)	767, 1314
PpsI	GAGTC	2 cut(s)	767, 1314
PpuMI	RGGWCCY	1 cut(s)	1174
PscI	ACATGT	1 cut(s)	306
Psp124BI	GAGCTC	2 cut(s)	634, 1398
Psp5II	RGGWCCY	1 cut(s)	1174
Psp6I	CCWGG	3 cut(s)	110, 1081, 1177
PspGI	CCWGG	3 cut(s)	110, 1081, 1177
PspN4I	GGNNCC	4 cut(s)	169, 253, 957, 1176
PspPI	GGNCC	4 cut(s)	167, 749, 1085, 1174
PspPPI	RGGWCCY	1 cut(s)	1174
PstNI	CAGNNNCTG	1 cut(s)	899
PsuI	RGATCY	1 cut(s)	131
PsyI	GACNNNGTC	2 cut(s)	149, 1172
RsaI	GTAC	3 cut(s)	89, 311, 1256
RsaNI	GTAC	3 cut(s)	88, 310, 1255
SacI	GAGCTC	2 cut(s)	634, 1398
SaqAI	TTAA	2 cut(s)	213, 465
SatI	GCNGC	8 cut(s)	29, 163, 186, 198, 203, 250, 1410, 1500
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	4 cut(s)	167, 749, 1085, 1174
SchI	GAGTC	2 cut(s)	767, 1314
ScrFI	CCNGG	6 cut(s)	112, 171, 588, 970, 1083, 1179
SduI	GDGCHC	4 cut(s)	244, 634, 704, 1398
SfaNI	GCATC	5 cut(s)	234, 905, 1388, 1420, 1442
SinI	GGWCC	4 cut(s)	167, 749, 1085, 1174
SmlI	CTYRAG	2 cut(s)	212, 806
SmoI	CTYRAG	2 cut(s)	212, 806
SphI	GCATGC	2 cut(s)	329, 1128
Sse9I	AATT	6 cut(s)	426, 498, 555, 591, 791, 1017
SseBI	AGGCCT	2 cut(s)	38, 1241
SspMI	CTAG	4 cut(s)	51, 692, 1139, 1534
SstI	GAGCTC	2 cut(s)	634, 1398
StuI	AGGCCT	2 cut(s)	38, 1241
StyD4I	CCNGG	6 cut(s)	110, 169, 586, 968, 1081, 1177
StyI	CCWWGG	3 cut(s)	282, 1296, 1503
TaaI	ACNGT	2 cut(s)	532, 736
TaiI	ACGT	4 cut(s)	71, 150, 183, 267
TaqI	TCGA	3 cut(s)	228, 363, 1436
TasI	AATT	6 cut(s)	426, 498, 555, 591, 791, 1017
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	5 cut(s)	31, 165, 188, 200, 252
Tru1I	TTAA	2 cut(s)	213, 465
Tru9I	TTAA	2 cut(s)	213, 465
TscAI	CASTG	1 cut(s)	510
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	3 cut(s)	202, 1409, 1499
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	7 cut(s)	284, 472, 817, 836, 1049, 1267, 1358
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	510
Tth111I	GACNNNGTC	2 cut(s)	149, 1172
Van91I	CCANNNNNTGG	1 cut(s)	899
Vha464I	CTTAAG	1 cut(s)	212
VpaK11BI	GGWCC	4 cut(s)	167, 749, 1085, 1174
XagI	CCTNNNNNAGG	1 cut(s)	109
XapI	RAATTY	2 cut(s)	498, 1017
XbaI	TCTAGA	1 cut(s)	50
XceI	RCATGY	3 cut(s)	310, 329, 1128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	631
XmiI	GTMKAC	1 cut(s)	1188
XspI	CTAG	4 cut(s)	51, 692, 1139, 1534
ZraI	GACGTC	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	1435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.