Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009911

Physical Location & Seq

Genomic Coordinates Forward (+)

13307493 .. 13308978

Gene Structure 1486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCGTCCATGGCCACCCTTTTCGTCAACACCCCCTACCCCTCTCACTCTTTCCCCAAGCCGTCATCCGCCCATTACGCCCCCGTCCTCAAGCTCTCAACCCATCTCGGGTCCAAGCCCAGGACCCGCCAAAGGCTCCGAATTTCAAACGGCTTGATCGAGCCGGACGGCGGGAAGCTGGCGGAGCTCTTCGTCGAGGAGTCGAAGAAAGGCGAGACGAAGAAAGAGGCGGCGGCGCTGCCCAGGATCAATCTTTCAAGGATCGACCTCCAATGGGTTCACGTGATCAGCGAAGGCTGGTCGAGTCCTCTCCGCGGATTCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTCAATTCGCTCCGACTCGATGACGGGTCGGTCGTGAATATGTCGGTGCCAATAGTCCTGGCCATCGACGACGCGCAGAAACGCCGTATCGGCGAGTCGACCCGTGTCGCGCTCCTCGACTCGGATGATAATCTGATCGCTATTTTGAAAGATATTGAGATCTATAAGCACCTTAAAGAAGAACGGATTGCCCGCACTTGGGGAACAACTGCCCCTGGTTTGCCTTATGTTGATCAAGCCATAACCAATGCTGGAAACTGGCTGATTGGAGGTGACCTAGAGGTTCTAGACCCTATAAAGTACAATGATGGCAAAATAGCCGCAGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0001887 GO:0003674 GO:0003824 GO:0004020 GO:0004779 GO:0004781 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006790 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009719 GO:0009725 GO:0009735 GO:0009970 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051259 GO:0051716 GO:0065003 GO:0070206 GO:0070566 GO:0071496 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00230 ko00261 ko00450 ko00920 ko01100 ko01120 ko01130 map00230 map00261 map00450 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

ATP-sulfurylase PUA_2

Protein Analysis

229

Amino Acids

25.34

Weight (kDa)

6.32

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA_2	PF14306	53 - 215	2.4e-46	PUA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22890 AT4G14680 AT4G14680 AT5G43780
fragaria_vesca	FvH4_4g01660
malus_domestica	MD13G1201500.v1.1 MD16G1201400.v1.1
prunus_persica	Prupe.1G023000_v2.0.a1
pyrus_communis	pycom13g17480 pycom16g17000
rosa_chinensis	RchiOBHm_Chr4g0388281
rosa_laevigata	RLG00000010068
rosa_multiflora	Rmu_sc0000753.1_g000031 Rmu_sc0001949.1_g000019
rosa_roxburghii	Rroxscaffold_5G00334740
rosa_rugosa	Rorug03G0316600
rosa_samantha	Rh4AG022000 Rh4BG015900 Rh4CG022500 Rh4DG016800
rosa_wichuraiana	Rw4G001450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	400
AccI	GTMKAC	1 cut(s)	452
AccII	CGCG	3 cut(s)	315, 428, 464
AclWI	GGATC	2 cut(s)	254, 269
AcoI	YGGCCR	2 cut(s)	12, 414
AcsI	RAATTY	1 cut(s)	141
AcvI	CACGTG	1 cut(s)	283
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	656
AfiI	CCNNNNNNNGG	9 cut(s)	108, 120, 132, 170, 274, 314, 475, 552, 553
AgsI	TTSAA	4 cut(s)	147, 258, 358, 502
AjnI	CCWGG	4 cut(s)	119, 242, 411, 568
AluBI	AGCT	3 cut(s)	94, 178, 187
AluI	AGCT	3 cut(s)	94, 178, 187
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	2 cut(s)	254, 269
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	12, 414
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	141
AspLEI	GCGC	3 cut(s)	238, 430, 466
AspS9I	GGNCC	2 cut(s)	111, 123
AsuHPI	GGTGA	1 cut(s)	638
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	111, 123
BalI	TGGCCA	2 cut(s)	14, 416
BanI	GGYRCC	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	189
BbrPI	CACGTG	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	3 cut(s)	111, 425, 656
BceAI	ACGGC	4 cut(s)	46, 166, 184, 423
BciT130I	CCWGG	4 cut(s)	121, 244, 413, 570
BclI	TGATCA	2 cut(s)	285, 586
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	632, 641
BfoI	RGCGCY	1 cut(s)	239
BglI	GCCNNNNNGGC	1 cut(s)	444
BglII	AGATCT	1 cut(s)	513
BisI	GCNGC	4 cut(s)	231, 234, 239, 675
BlsI	GCNGC	4 cut(s)	232, 235, 240, 676
Bme1390I	CCNGG	4 cut(s)	121, 244, 413, 570
Bme18I	GGWCC	2 cut(s)	111, 123
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	111, 123
BmiI	GGNNCC	4 cut(s)	112, 125, 137, 402
BmrFI	CCNGG	4 cut(s)	121, 244, 413, 570
BoxI	GACNNNNGTC	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	483
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	5 cut(s)	9, 119, 242, 313, 568
Bsc4I	CCNNNNNNNGG	9 cut(s)	108, 120, 132, 170, 274, 314, 475, 552, 553
Bse1I	ACTGG	1 cut(s)	617
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	4 cut(s)	121, 244, 413, 570
BseDI	CCNNGG	5 cut(s)	9, 119, 242, 313, 568
BseGI	GGATG	2 cut(s)	65, 484
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	9 cut(s)	108, 120, 132, 170, 274, 314, 475, 552, 553
BseNI	ACTGG	1 cut(s)	617
BseRI	GAGGAG	2 cut(s)	212, 458
BseXI	GCAGC	1 cut(s)	225
Bsh1236I	CGCG	3 cut(s)	315, 428, 464
Bsh1285I	CGRYCG	1 cut(s)	387
BshFI	GGCC	2 cut(s)	14, 416
BshNI	GGYRCC	1 cut(s)	400
BsiEI	CGRYCG	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	9 cut(s)	108, 120, 132, 170, 274, 314, 475, 552, 553
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	14, 416
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	7 cut(s)	156, 246, 261, 285, 489, 513, 586
Bsp19I	CCATGG	1 cut(s)	9
BspANI	GGCC	2 cut(s)	14, 416
BspFNI	CGCG	3 cut(s)	315, 428, 464
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	4 cut(s)	112, 125, 137, 402
BspPI	GGATC	2 cut(s)	254, 269
BspQI	GCTCTTC	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	617
BssECI	CCNNGG	5 cut(s)	9, 119, 242, 313, 568
BssMI	GATC	7 cut(s)	156, 246, 261, 285, 489, 513, 586
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	4 cut(s)	121, 244, 413, 570
Bst6I	CTCTTC	2 cut(s)	194, 354
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	180, 547
BstDSI	CCRYGG	2 cut(s)	9, 313
BstEII	GGTNACC	1 cut(s)	626
BstF5I	GGATG	2 cut(s)	65, 484
BstFNI	CGCG	3 cut(s)	315, 428, 464
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	3 cut(s)	238, 430, 466
BstKTI	GATC	7 cut(s)	159, 249, 264, 288, 492, 516, 589
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	7 cut(s)	156, 246, 261, 285, 489, 513, 586
BstMCI	CGRYCG	1 cut(s)	387
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 77, 184, 444
BstNI	CCWGG	4 cut(s)	121, 244, 413, 570
BstPAI	GACNNNNGTC	1 cut(s)	458
BstPI	GGTNACC	1 cut(s)	626
BstSCI	CCNGG	4 cut(s)	119, 242, 411, 568
BstUI	CGCG	3 cut(s)	315, 428, 464
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	513
BstYI	RGATCY	1 cut(s)	513
BsuRI	GGCC	2 cut(s)	14, 416
BtgI	CCRYGG	2 cut(s)	9, 313
BtsCI	GGATG	2 cut(s)	65, 484
Cac8I	GCNNGC	2 cut(s)	180, 547
CciI	TCATGA	1 cut(s)	321
CfoI	GCGC	3 cut(s)	238, 430, 466
Cfr13I	GGNCC	2 cut(s)	111, 123
Cfr42I	CCGCGG	1 cut(s)	316
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	1 cut(s)	655
CviAII	CATG	2 cut(s)	10, 322
CviQI	GTAC	1 cut(s)	655
DpnI	GATC	7 cut(s)	158, 248, 263, 287, 491, 515, 588
DpnII	GATC	7 cut(s)	156, 246, 261, 285, 489, 513, 586
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
EaeI	YGGCCR	2 cut(s)	12, 414
Eam1104I	CTCTTC	2 cut(s)	194, 354
EarI	CTCTTC	2 cut(s)	194, 354
EciI	GGCGGA	2 cut(s)	58, 197
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	2 cut(s)	111, 123
Eco53kI	GAGCTC	1 cut(s)	187
Eco72I	CACGTG	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	107
Eco91I	GGTNACC	1 cut(s)	626
EcoICRI	GAGCTC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	123
EcoO65I	GGTNACC	1 cut(s)	626
EcoRII	CCWGG	4 cut(s)	119, 242, 411, 568
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	2 cut(s)	13, 325
FaiI	YATR	7 cut(s)	11, 323, 395, 519, 582, 596, 650
FatI	CATG	2 cut(s)	9, 321
FauI	CCCGC	3 cut(s)	134, 164, 554
FbaI	TGATCA	2 cut(s)	285, 586
FblI	GTMKAC	1 cut(s)	452
Fnu4HI	GCNGC	4 cut(s)	231, 234, 239, 675
FokI	GGATG	2 cut(s)	52, 491
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	4 cut(s)	231, 234, 239, 675
FspBI	CTAG	2 cut(s)	632, 641
GlaI	GCGC	3 cut(s)	237, 429, 465
GluI	GCNGC	4 cut(s)	231, 234, 239, 675
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	14, 416
HapII	CCGG	1 cut(s)	164
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	3 cut(s)	238, 430, 466
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	13, 325
Hin6I	GCGC	3 cut(s)	236, 428, 464
HinP1I	GCGC	3 cut(s)	236, 428, 464
HincII	GTYRAC	2 cut(s)	28, 453
HindII	GTYRAC	2 cut(s)	28, 453
HinfI	GANTC	7 cut(s)	200, 304, 318, 329, 369, 449, 473
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	1 cut(s)	638
Hpy166II	GTNNAC	3 cut(s)	28, 280, 453
Hpy188I	TCNGA	5 cut(s)	140, 334, 368, 478, 489
Hpy188III	TCNNGA	3 cut(s)	322, 388, 641
Hpy8I	GTNNAC	3 cut(s)	28, 280, 453
Hpy99I	CGWCG	3 cut(s)	197, 425, 428
HpyAV	CCTTC	1 cut(s)	287
HpyCH4IV	ACGT	1 cut(s)	282
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 77, 184, 444
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	13, 325
HspAI	GCGC	3 cut(s)	236, 428, 464
Ksp22I	TGATCA	2 cut(s)	285, 586
KspI	CCGCGG	1 cut(s)	316
Kzo9I	GATC	7 cut(s)	156, 246, 261, 285, 489, 513, 586
LguI	GCTCTTC	1 cut(s)	194
LmnI	GCTCC	4 cut(s)	141, 184, 369, 471
Lsp1109I	GCAGC	1 cut(s)	225
MaeI	CTAG	2 cut(s)	632, 641
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	626
MalI	GATC	7 cut(s)	158, 248, 263, 287, 491, 515, 588
MboI	GATC	7 cut(s)	156, 246, 261, 285, 489, 513, 586
MboII	GAAGA	5 cut(s)	181, 217, 232, 341, 545
MflI	RGATCY	1 cut(s)	513
MhlI	GDGCHC	1 cut(s)	189
MlsI	TGGCCA	2 cut(s)	14, 416
MluCI	AATT	2 cut(s)	141, 358
MluNI	TGGCCA	2 cut(s)	14, 416
MlyI	GAGTC	5 cut(s)	209, 313, 363, 458, 467
MmeI	TCCRAC	1 cut(s)	391
Mox20I	TGGCCA	2 cut(s)	14, 416
MscI	TGGCCA	2 cut(s)	14, 416
MseI	TTAA	1 cut(s)	528
Msp20I	TGGCCA	2 cut(s)	14, 416
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	4 cut(s)	121, 244, 413, 570
MvaI	CCWGG	4 cut(s)	121, 244, 413, 570
MvnI	CGCG	3 cut(s)	315, 428, 464
MwoI	GCNNNNNNNGC	4 cut(s)	11, 77, 184, 444
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	7 cut(s)	156, 246, 261, 285, 489, 513, 586
NlaIII	CATG	2 cut(s)	13, 325
NlaIV	GGNNCC	4 cut(s)	112, 125, 137, 402
NmuCI	GTSAC	1 cut(s)	626
PagI	TCATGA	1 cut(s)	321
PciSI	GCTCTTC	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	4 cut(s)	156, 288, 384, 468
PfeI	GAWTC	2 cut(s)	318, 329
PkrI	GCNGC	4 cut(s)	232, 235, 240, 676
PleI	GAGTC	5 cut(s)	208, 312, 363, 457, 467
PmaCI	CACGTG	1 cut(s)	283
PmlI	CACGTG	1 cut(s)	283
PpsI	GAGTC	5 cut(s)	208, 312, 363, 457, 467
Ppu21I	YACGTR	1 cut(s)	283
PpuMI	RGGWCCY	1 cut(s)	123
PshAI	GACNNNNGTC	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	123
Psp6I	CCWGG	4 cut(s)	119, 242, 411, 568
PspCI	CACGTG	1 cut(s)	283
PspEI	GGTNACC	1 cut(s)	626
PspGI	CCWGG	4 cut(s)	119, 242, 411, 568
PspN4I	GGNNCC	4 cut(s)	112, 125, 137, 402
PspPI	GGNCC	2 cut(s)	111, 123
PspPPI	RGGWCCY	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	513
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
SacI	GAGCTC	1 cut(s)	189
SacII	CCGCGG	1 cut(s)	316
SalI	GTCGAC	1 cut(s)	451
SapI	GCTCTTC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	4 cut(s)	231, 234, 239, 675
Sau3AI	GATC	7 cut(s)	156, 246, 261, 285, 489, 513, 586
Sau96I	GGNCC	2 cut(s)	111, 123
SchI	GAGTC	5 cut(s)	209, 313, 363, 458, 467
ScrFI	CCNGG	4 cut(s)	121, 244, 413, 570
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	9 cut(s)	96, 180, 189, 270, 285, 528, 628, 633, 639
Sfr303I	CCGCGG	1 cut(s)	316
SgrBI	CCGCGG	1 cut(s)	316
SinI	GGWCC	2 cut(s)	111, 123
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	141, 358
SspMI	CTAG	2 cut(s)	632, 641
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	4 cut(s)	119, 242, 411, 568
StyI	CCWWGG	1 cut(s)	9
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	9 cut(s)	159, 195, 203, 264, 302, 372, 420, 452, 471
TaqII	GACCGA	1 cut(s)	373
TasI	AATT	2 cut(s)	141, 358
TatI	WGTACW	1 cut(s)	654
TauI	GCSGC	3 cut(s)	233, 236, 677
TfiI	GAWTC	2 cut(s)	318, 329
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	2 cut(s)	310, 341
TspGWI	ACGGA	1 cut(s)	553
VpaK11BI	GGWCC	2 cut(s)	111, 123
XapI	RAATTY	1 cut(s)	141
XbaI	TCTAGA	1 cut(s)	640
XmiI	GTMKAC	1 cut(s)	452
XspI	CTAG	2 cut(s)	632, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.