pycom13g24850

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0019242
Physical Location & Seq
Forward (+)
21857803 .. 21862091
4289 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3390 bp
ATGAATGAGATTTTTAATCCATACAGTCACTTTTCGATTGTTTATATCGATGATGTGTTAATCTTTTCAAAATCAATAGATGAGCATTGGAAGCATTTGCATATGTTTGCTAGAATCATCAAGACCAATGGATTAGTTGTTTCAGCTACCAAGATTAAGTTATTCCAGACCAAGTTTGCCGAAAAATTTCCAGATCAGATTACTGATAAAACTCAACTCCAACGTTTTCTTGGATCTCTTAATTGTGTTTCTGAATTTTATCCTCATCTTCAACAGCAATGCAAACCTTTATTTGATCGTCTTAAGGAGAATCCTCCATCATGGTCTCAAATTCATACTTCCATTGTTAAACAGATTAAAAATCATGTCAAGACTTTGCCTTGCCTTGGCATTCCAACTCCCAACTCATTCAAGATAAAAACTTCTTCCAAAACTCCTGAACAAATTGTTCGTTTCCATTCAGGAATTTGGAATCCTACTCAACATAACTATAGTACTATTAAGAAAGAAATATTATCTATTGTATTATGCATTAGCAAATTTCAAGATGATTTATTAAATCAAAAATTTTTGGTTCGTGTTGATTGCAAATCTGCAAAACATGTTTTACAAAAAGATGTTCAAAACATTGCATCAAAACAGATTTTTGCACGCTGGCAAGCCATATTAAGTATTTTTGATTTTGAAATTGAATACATTAATGGCAGCCAGAATTGCATCCCTGATTTTCTAACCAGAGAATTTTTGCAGGGGAAGAATGGCACTAGTAAAACAAGAATCTATTCCCGATTCCTCATCGGCCTTAGCCATTACAAACAGATTTACTCCCTTGGGATCAACTATAGGAAATATCCTCTTCAGATCGATCTCCATCTCCTTCAATCCCAAAAACACCTAGCTTTGCTAAAACATCACCCTATCTCAAAAATCCAAACTCAGAAAGGCTTTTTAGCATACCATACCATATTGATAAAAATCAACCTCCAGAGTGCATTGCCAAAATTCTCCTTCCCCCAAACTATCATTTTCTTCCAACCGAATCTTTCAAAAGTCTTAAATATTACCAAGCCATTCTCTCTGAGACAGAAAGCATTGCTATCAAATCCATTTTCAGCACCACCCATGAAAACAAAATATTGTACCATTCCCTCCACATCGGAAAATTCCTTACTGAACAAGAATGGGGAATCCCCCTCTATCATACCAAACCTCTTCACACATAACATGTTCTCATCCCGAACAACCATTACAATTATTATGATTATATCCAAGCATGGACTAATATTTTTCTCTATCAGACAACTGATTTCACATGGTTTACAGAATGGTGGGCTTCTCATGGCCCAAATGTTTCTCTTATCCCAGATGACCTTCGTCAAGCACTCATCAATAGCTTCCAAAACAAATTTAATCGCAGTTGTTTCGACAGCAGGGTTTCTCTCTTTTCATTATTCATGGCCAAACAATGGCGGCATTTACAGGACCCAATGGGTGAAATGGTGGGACAAATTCAACCATCAGAAGATTATCGATTTAGTAAAATCAGAATTTCCTAAGTCCCAGCTCCATCGATTTCTGCTCCGTCAACACAGGCTTTGCCAGAAGACCAGCAATTTCCTGAATTACCAAAAGCTTAGGAACAAGTTCAATCGCTCTCAGATATCAGCCCTTCATCCTCTCTTAAGGGAAAATCCAAGTCTTCCAAATCCTCCAGTTCTAAGAAGAAAGAGAAATCCTCAAAATCTTCCCAACACTTGGATTTGGCCCAGCAACTTATGGCAGATGCAGCAATGCTTCACAAAAGAGGAAGTTCAGACTCCGACTCAGATGTTTCGGACGCTTCATCTCAGCTTCCCGCCAAGTGGGCAGATCGACCGGATGCCTAAGATCCATTTGAATTTTGAATTTCAGAGTTGTAATAATTTCCCATGCGATCGTATCCAAAATAGCATCATCAGCAGTAGCAGTCATCATTTCAGATTCCTGACAAGCCACTATTCATCAACAGTAAAAGCAGACAAATTATTGTTCATACAAATTCACCAGCCTTTACCAGGTAAGAGCACATGCAAGCGGGATTCCTGGCTCAATTATCTCATCCCCAATCATTCCTCTTCACAGCATAAAAGAGGAACTCAATCTCAGAAAAAGGGGACTTTAGTCGAAAAGAATTCTCTGCGTATTCGAAAGAACAGAGAACATTTCAGTAGAAAATCAAACACTTTTAATATTATTATCAAGGATGCCTTTTTAATAAAAACTTATTTTCACAACCTATCTGCATCATTAATTTTAATTCATTATTTTCATGGAAATATCATTCATATTCAATTTAATTTTATGCCTTCATGTTATAATCTGCCATCCATGGATATTTCATCTTTTACTTCTGCATTCTTGATTCTATGGACGGTTTTACCGCCTGAGTTAGTTCCGCCCCATTTGGTATCAAATTCTGATTTCATATCTCTTTTATCCTATCTTCAATTTCTTATTTATCAATCCTCACTTGTTCAAACTCCCAACCAAATAGTAAGGCGTGGTCCAAACAGTAAGGCCCGAGGAGAGCAGAGGAATGTGAATCATTTAAGTTTTGCCTATAGAATATTAAATTCAATGGCCAGCACTAGCTCCAGATCCAACTTAGGAACTATACCAGACATTATAAATGAAGAACAAAAACTTGATTTTCAAACTGATGAAAGTATTGATTTTGGAGATTGGAATATTCCAAAAGTTTCAAGCAAAAATATTTACAAGAAAAAATGGTCGTTGACCTCTTTTAAATCTGAACATCATGTTAAAACTGTTGAAAAAACTTATAAAGCTCACTTTGTAATGTATTTCAACGATCTGAATCGTCTATATTTTAGTGCATCATTCATAAATCATCATTCCAAGAAATTAGATAAAGTCAAATCTATTAAGATATTCATTTGTAGTAATCCAACGGTTATATGGTTTCGAATTTGGAAGATTTTTCGTAGACATGAATTTTTATCTAACTACAATTTAGATAAAAGGCTTGACGGTGTGTCAATGTCAACAAATAATAAAAATATAGAATCATATTTATGTGACTTTGTTAACCTATTTCCTTGCATTTACTCAGTTAGTTTCTTTTTATTAGCGTGTTTTAAGCCATTTTTGTGTGTTTGTAGGTTCAAATGGCAAAAGTGGCAAGAAAAGGCATTTTGGAGCATTTTAGAACAGTTTTGGCTGGAGAAATTAATTCAAGACTTAGAAGATAAGGAATCAGCTAAAAAGAAGGAAACATTATCCAAATTACCTTATCTTATCCAAACCTTATCCAAGCTTATCTTATCTTATCCTATCCTAACCTTATCCTACCTTAATTCCAATTGCAAGGGGGAATCAATTTCACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP RVT_1 zf-CCHC

Protein Analysis

1130

Amino Acids

131.82

Weight (kDa)

9.85

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 1 - 58 1.7e-08 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 143 - 192 4.3e-08 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 144 - 224 2.5e-13 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39761
prunus_persica Prupe.4G270900_v2.0.a1
pyrus_communis pycom01g03940 pycom03g01680 pycom13g24850
rosa_multiflora Rmu_sc0000235.1_g000028 Rmu_sc0000365.1_g000044 Rmu_sc0006558.1_g000026

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 2355, 2666, 2823
AccB7I CCANNNNNTGG 2 cut(s) 1466, 1755
AccI GTMKAC 1 cut(s) 2986
AciI CCGC 5 cut(s) 1470, 1856, 2074, 2420, 2435
AclI AACGTT 1 cut(s) 223
AclWI GGATC 4 cut(s) 241, 842, 1882, 2631
AcoI YGGCCR 2 cut(s) 1457, 2619
AcuI CTGAAG 1 cut(s) 842
AfaI GTAC 2 cut(s) 496, 1141
AfiI CCNNNNNNNGG 5 cut(s) 386, 1466, 1755, 1862, 2054
AflII CTTAAG 2 cut(s) 302, 1681
AflIII ACRYGT 2 cut(s) 601, 1224
AhdI GACNNNNNGTC 1 cut(s) 3034
AhlI ACTAGT 1 cut(s) 764
AjnI CCWGG 2 cut(s) 2053, 2081
Alw21I GWGCWC 1 cut(s) 2066
Alw26I GTCTC 2 cut(s) 330, 1075
AlwI GGATC 4 cut(s) 241, 842, 1882, 2631
Ama87I CYCGRG 1 cut(s) 2559
AoxI GGCC 6 cut(s) 799, 1341, 1457, 1763, 2556, 2619
ApeKI GCWGC 2 cut(s) 705, 1786
AseI ATTAAT 3 cut(s) 699, 2288, 3230
Asp700I GAANNNNTTC 3 cut(s) 186, 781, 1643
AspS9I GGNCC 5 cut(s) 1342, 1482, 1764, 2543, 2557
AsuHPI GGTGA 3 cut(s) 905, 1504, 2033
AsuII TTCGAA 2 cut(s) 2185, 2965
AvaI CYCGRG 1 cut(s) 2559
AvaII GGWCC 2 cut(s) 1482, 2543
BalI TGGCCA 2 cut(s) 1459, 2621
BbsI GAAGAC 2 cut(s) 1610, 1691
Bbv12I GWGCWC 1 cut(s) 2066
BbvI GCAGC 2 cut(s) 717, 1798
BccI CCATC 5 cut(s) 325, 879, 1524, 1575, 2371
BcgI CGANNNNNNTGC 2 cut(s) 1404, 1438
BciT130I CCWGG 2 cut(s) 2055, 2083
BciVI GTATCC 1 cut(s) 1949
BcoDI GTCTC 2 cut(s) 330, 1075
BcuI ACTAGT 1 cut(s) 764
BfaI CTAG 4 cut(s) 111, 765, 896, 2628
BfmI CTRYAG 3 cut(s) 490, 841, 2599
BfrI CTTAAG 2 cut(s) 302, 1681
BfuI GTATCC 1 cut(s) 1949
BglI GCCNNNNNGGC 1 cut(s) 1864
BisI GCNGC 3 cut(s) 706, 1471, 1787
BlsI GCNGC 3 cut(s) 707, 1472, 1788
BmcAI AGTACT 1 cut(s) 496
Bme1390I CCNGG 2 cut(s) 2055, 2083
Bme18I GGWCC 2 cut(s) 1482, 2543
BmeRI GACNNNNNGTC 1 cut(s) 3034
BmeT110I CYCGRG 1 cut(s) 2559
BmgT120I GGNCC 5 cut(s) 1342, 1482, 1764, 2543, 2557
BmiI GGNNCC 1 cut(s) 1484
BmrFI CCNGG 2 cut(s) 2055, 2083
BmsI GCATC 8 cut(s) 641, 726, 1773, 1869, 1959, 2233, 2291, 2885
BoxI GACNNNNGTC 2 cut(s) 1373, 2159
BpiI GAAGAC 2 cut(s) 1610, 1691
BplI GAGNNNNNCTC 2 cut(s) 1720, 1752
BpmI CTGGAG 4 cut(s) 968, 1695, 2617, 3242
Bpu10I CCTNAGC 2 cut(s) 803, 1634
Bpu14I TTCGAA 2 cut(s) 2185, 2965
Bsa29I ATCGAT 4 cut(s) 48, 864, 1530, 1570
BsaBI GATNNNNATC 3 cut(s) 870, 974, 2856
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 4 cut(s) 385, 829, 2367, 2560
BsaWI WCCGGW 1 cut(s) 1875
Bsc4I CCNNNNNNNGG 5 cut(s) 386, 1466, 1755, 1862, 2054
Bse1I ACTGG 1 cut(s) 1712
Bse3DI GCAATG 5 cut(s) 284, 627, 992, 1091, 1796
Bse8I GATNNNNATC 3 cut(s) 870, 974, 2856
BseBI CCWGG 2 cut(s) 2055, 2083
BseCI ATCGAT 4 cut(s) 48, 864, 1530, 1570
BseDI CCNNGG 4 cut(s) 385, 829, 2367, 2560
BseGI GGATG 7 cut(s) 717, 1232, 1672, 1884, 2097, 2248, 2363
BseJI GATNNNNATC 3 cut(s) 870, 974, 2856
BseLI CCNNNNNNNGG 5 cut(s) 386, 1466, 1755, 1862, 2054
BseMI GCAATG 5 cut(s) 284, 627, 992, 1091, 1796
BseMII CTCAG 8 cut(s) 950, 1070, 1670, 1838, 1861, 2156, 2415, 3123
BseNI ACTGG 1 cut(s) 1712
BseRI GAGGAG 1 cut(s) 2577
BseXI GCAGC 2 cut(s) 717, 1798
BseYI CCCAGC 2 cut(s) 1560, 1766
Bsh1285I CGRYCG 2 cut(s) 1876, 1936
BshFI GGCC 6 cut(s) 801, 1343, 1459, 1765, 2558, 2621
BshVI ATCGAT 4 cut(s) 48, 864, 1530, 1570
BsiEI CGRYCG 2 cut(s) 1876, 1936
BsiHKAI GWGCWC 1 cut(s) 2066
BsiHKCI CYCGRG 1 cut(s) 2559
BsiSI CCGG 1 cut(s) 1876
BslFI GGGAC 3 cut(s) 1517, 1543, 2167
BslI CCNNNNNNNGG 5 cut(s) 386, 1466, 1755, 1862, 2054
BsmAI GTCTC 2 cut(s) 330, 1075
BsmFI GGGAC 3 cut(s) 1517, 1543, 2167
BsmI GAATGC 2 cut(s) 390, 2393
BsnI GGCC 6 cut(s) 801, 1343, 1459, 1765, 2558, 2621
Bso31I GGTCTC 1 cut(s) 330
BsoBI CYCGRG 1 cut(s) 2559
Bsp119I TTCGAA 2 cut(s) 2185, 2965
Bsp1286I GDGCHC 1 cut(s) 2066
Bsp19I CCATGG 1 cut(s) 2367
BspACI CCGC 5 cut(s) 1470, 1856, 2074, 2420, 2435
BspANI GGCC 6 cut(s) 801, 1343, 1459, 1765, 2558, 2621
BspCNI CTCAG 8 cut(s) 949, 1071, 1669, 1837, 1860, 2155, 2416, 3122
BspDI ATCGAT 4 cut(s) 48, 864, 1530, 1570
BspLI GGNNCC 1 cut(s) 1484
BspPI GGATC 4 cut(s) 241, 842, 1882, 2631
BspT104I TTCGAA 2 cut(s) 2185, 2965
BspTI CTTAAG 2 cut(s) 302, 1681
BspTNI GGTCTC 1 cut(s) 330
BsrDI GCAATG 5 cut(s) 284, 627, 992, 1091, 1796
BsrI ACTGG 1 cut(s) 1712
BssECI CCNNGG 4 cut(s) 385, 829, 2367, 2560
BssT1I CCWWGG 3 cut(s) 385, 829, 2367
Bst2UI CCWGG 2 cut(s) 2055, 2083
Bst4CI ACNGT 8 cut(s) 26, 2008, 2413, 2552, 2809, 2953, 3032, 3213
Bst6I CTCTTC 3 cut(s) 861, 1217, 2119
BstAFI CTTAAG 2 cut(s) 302, 1681
BstBI TTCGAA 2 cut(s) 2185, 2965
BstC8I GCNNGC 5 cut(s) 652, 656, 660, 2072, 2623
BstDSI CCRYGG 1 cut(s) 2367
BstENI CCTNNNNNAGG 1 cut(s) 2052
BstF5I GGATG 7 cut(s) 717, 1232, 1672, 1884, 2097, 2248, 2363
BstMAI GTCTC 2 cut(s) 330, 1075
BstMCI CGRYCG 2 cut(s) 1876, 1936
BstMWI GCNNNNNNNGC 6 cut(s) 91, 714, 1786, 1864, 1956, 3178
BstNI CCWGG 2 cut(s) 2055, 2083
BstNSI RCATGY 3 cut(s) 605, 1228, 2070
BstPAI GACNNNNGTC 2 cut(s) 1373, 2159
BstSCI CCNGG 2 cut(s) 2053, 2081
BstSFI CTRYAG 3 cut(s) 490, 841, 2599
BstV1I GCAGC 2 cut(s) 717, 1798
BstV2I GAAGAC 2 cut(s) 1610, 1691
BstX2I RGATCY 3 cut(s) 233, 1887, 2636
BstYI RGATCY 3 cut(s) 233, 1887, 2636
Bsu15I ATCGAT 4 cut(s) 48, 864, 1530, 1570
BsuI GTATCC 1 cut(s) 1949
BsuRI GGCC 6 cut(s) 801, 1343, 1459, 1765, 2558, 2621
BsuTUI ATCGAT 4 cut(s) 48, 864, 1530, 1570
BtgI CCRYGG 1 cut(s) 2367
BtsCI GGATG 7 cut(s) 717, 1232, 1672, 1884, 2097, 2248, 2363
Cac8I GCNNGC 5 cut(s) 652, 656, 660, 2072, 2623
Cfr13I GGNCC 5 cut(s) 1342, 1482, 1764, 2543, 2557
ClaI ATCGAT 4 cut(s) 48, 864, 1530, 1570
CseI GACGC 1 cut(s) 1846
CsiI ACCWGGT 1 cut(s) 2053
Csp6I GTAC 2 cut(s) 495, 1140
CviQI GTAC 2 cut(s) 495, 1140
DraI TTTAAA 1 cut(s) 2785
DriI GACNNNNNGTC 1 cut(s) 3034
EaeI YGGCCR 2 cut(s) 1457, 2619
Eam1104I CTCTTC 3 cut(s) 861, 1217, 2119
Eam1105I GACNNNNNGTC 1 cut(s) 3034
EarI CTCTTC 3 cut(s) 861, 1217, 2119
EciI GGCGGA 1 cut(s) 2424
Eco130I CCWWGG 3 cut(s) 385, 829, 2367
Eco31I GGTCTC 1 cut(s) 330
Eco32I GATATC 1 cut(s) 1662
Eco47I GGWCC 2 cut(s) 1482, 2543
Eco57I CTGAAG 1 cut(s) 842
Eco88I CYCGRG 1 cut(s) 2559
EcoNI CCTNNNNNAGG 1 cut(s) 2052
EcoO109I RGGNCCY 1 cut(s) 1482
EcoRI GAATTC 1 cut(s) 2170
EcoRII CCWGG 2 cut(s) 2053, 2081
EcoRV GATATC 1 cut(s) 1662
EcoT14I CCWWGG 3 cut(s) 385, 829, 2367
EcoT22I ATGCAT 1 cut(s) 533
ErhI CCWWGG 3 cut(s) 385, 829, 2367
FalI AAGNNNNNCTT 4 cut(s) 2231, 2263, 3305, 3337
FaqI GGGAC 3 cut(s) 1517, 1543, 2167
FauI CCCGC 2 cut(s) 1863, 2067
FauNDI CATATG 1 cut(s) 102
FblI GTMKAC 1 cut(s) 2986
Fnu4HI GCNGC 3 cut(s) 706, 1471, 1787
FokI GGATG 7 cut(s) 704, 1219, 1659, 1891, 2084, 2255, 2350
Fsp4HI GCNGC 3 cut(s) 706, 1471, 1787
FspBI CTAG 4 cut(s) 111, 765, 896, 2628
GluI GCNGC 3 cut(s) 706, 1471, 1787
GsaI CCCAGC 2 cut(s) 1564, 1770
GsuI CTGGAG 4 cut(s) 968, 1695, 2617, 3242
HaeIII GGCC 6 cut(s) 801, 1343, 1459, 1765, 2558, 2621
HapII CCGG 1 cut(s) 1876
HgaI GACGC 1 cut(s) 1846
HincII GTYRAC 4 cut(s) 1586, 2775, 3045, 3088
HindII GTYRAC 4 cut(s) 1586, 2775, 3045, 3088
HindIII AAGCTT 2 cut(s) 1631, 3314
HpaI GTTAAC 1 cut(s) 3088
HpaII CCGG 1 cut(s) 1876
HphI GGTGA 3 cut(s) 905, 1504, 2033
Hpy166II GTNNAC 6 cut(s) 1319, 1586, 2775, 2987, 3045, 3088
Hpy8I GTNNAC 6 cut(s) 1319, 1586, 2775, 2987, 3045, 3088
HpyAV CCTTC 6 cut(s) 887, 1018, 1381, 1679, 2355, 3262
HpyCH4III ACNGT 8 cut(s) 26, 2008, 2413, 2552, 2809, 2953, 3032, 3213
HpyCH4IV ACGT 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 6 cut(s) 91, 714, 1786, 1864, 1956, 3178
HpySE526I ACGT 1 cut(s) 223
KspAI GTTAAC 1 cut(s) 3088
LmnI GCTCC 4 cut(s) 1569, 1584, 2636, 3198
Lsp1109I GCAGC 2 cut(s) 717, 1798
LweI GCATC 8 cut(s) 641, 726, 1773, 1869, 1959, 2233, 2291, 2885
MabI ACCWGGT 1 cut(s) 2053
MaeI CTAG 4 cut(s) 111, 765, 896, 2628
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 2 cut(s) 26, 3077
MfeI CAATTG 1 cut(s) 3361
MflI RGATCY 3 cut(s) 233, 1887, 2636
MhlI GDGCHC 1 cut(s) 2066
MlsI TGGCCA 2 cut(s) 1459, 2621
MluNI TGGCCA 2 cut(s) 1459, 2621
MlyI GAGTC 2 cut(s) 1810, 1816
MmeI TCCRAC 6 cut(s) 244, 419, 1057, 1844, 2664, 2972
Mox20I TGGCCA 2 cut(s) 1459, 2621
Mph1103I ATGCAT 1 cut(s) 533
MroXI GAANNNNTTC 3 cut(s) 186, 781, 1643
MscI TGGCCA 2 cut(s) 1459, 2621
MslI CAYNNNNRTG 2 cut(s) 3073, 3148
Msp20I TGGCCA 2 cut(s) 1459, 2621
MspCI CTTAAG 2 cut(s) 302, 1681
MspI CCGG 1 cut(s) 1876
MspR9I CCNGG 2 cut(s) 2055, 2083
MunI CAATTG 1 cut(s) 3361
Mva1269I GAATGC 2 cut(s) 390, 2393
MvaI CCWGG 2 cut(s) 2055, 2083
MwoI GCNNNNNNNGC 6 cut(s) 91, 714, 1786, 1864, 1956, 3178
NcoI CCATGG 1 cut(s) 2367
NdeI CATATG 1 cut(s) 102
NlaIV GGNNCC 1 cut(s) 1484
NmuCI GTSAC 2 cut(s) 26, 3077
NsiI ATGCAT 1 cut(s) 533
NspI RCATGY 3 cut(s) 605, 1228, 2070
NspV TTCGAA 2 cut(s) 2185, 2965
PciI ACATGT 2 cut(s) 601, 1224
PctI GAATGC 2 cut(s) 390, 2393
PdmI GAANNNNTTC 3 cut(s) 186, 781, 1643
PflMI CCANNNNNTGG 2 cut(s) 1466, 1755
PkrI GCNGC 3 cut(s) 707, 1472, 1788
Ple19I CGATCG 1 cut(s) 1936
PleI GAGTC 2 cut(s) 1810, 1816
PpsI GAGTC 2 cut(s) 1810, 1816
PpuMI RGGWCCY 1 cut(s) 1482
PscI ACATGT 2 cut(s) 601, 1224
PshAI GACNNNNGTC 2 cut(s) 1373, 2159
PshBI ATTAAT 3 cut(s) 699, 2288, 3230
PsiI TTATAA 3 cut(s) 2355, 2666, 2823
Psp1406I AACGTT 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 1482
Psp6I CCWGG 2 cut(s) 2053, 2081
PspFI CCCAGC 2 cut(s) 1560, 1766
PspGI CCWGG 2 cut(s) 2053, 2081
PspN4I GGNNCC 1 cut(s) 1484
PspPI GGNCC 5 cut(s) 1342, 1482, 1764, 2543, 2557
PspPPI RGGWCCY 1 cut(s) 1482
PsrI GAACNNNNNNTAC 2 cut(s) 1231, 1263
PsuI RGATCY 3 cut(s) 233, 1887, 2636
PvuI CGATCG 1 cut(s) 1936
RsaI GTAC 2 cut(s) 496, 1141
RsaNI GTAC 2 cut(s) 495, 1140
RseI CAYNNNNRTG 2 cut(s) 3073, 3148
SatI GCNGC 3 cut(s) 706, 1471, 1787
Sau96I GGNCC 5 cut(s) 1342, 1482, 1764, 2543, 2557
ScaI AGTACT 1 cut(s) 496
SchI GAGTC 2 cut(s) 1810, 1816
ScrFI CCNGG 2 cut(s) 2055, 2083
SduI GDGCHC 1 cut(s) 2066
SexAI ACCWGGT 1 cut(s) 2053
SfaNI GCATC 8 cut(s) 641, 726, 1773, 1869, 1959, 2233, 2291, 2885
SfcI CTRYAG 3 cut(s) 490, 841, 2599
SfuI TTCGAA 2 cut(s) 2185, 2965
SinI GGWCC 2 cut(s) 1482, 2543
SmiMI CAYNNNNRTG 2 cut(s) 3073, 3148
SmlI CTYRAG 2 cut(s) 302, 1681
SmoI CTYRAG 2 cut(s) 302, 1681
SpeI ACTAGT 1 cut(s) 764
SsiI CCGC 5 cut(s) 1470, 1856, 2074, 2420, 2435
SspI AATATT 8 cut(s) 513, 1060, 1136, 1284, 2230, 2607, 2728, 2752
SspMI CTAG 4 cut(s) 111, 765, 896, 2628
StyD4I CCNGG 2 cut(s) 2053, 2081
StyI CCWWGG 3 cut(s) 385, 829, 2367
TaaI ACNGT 8 cut(s) 26, 2008, 2413, 2552, 2809, 2953, 3032, 3213
TaiI ACGT 1 cut(s) 226
TatI WGTACW 1 cut(s) 494
TauI GCSGC 1 cut(s) 1473
TseFI GTSAC 2 cut(s) 26, 3077
TseI GCWGC 2 cut(s) 705, 1786
Tsp45I GTSAC 2 cut(s) 26, 3077
TspGWI ACGGA 1 cut(s) 1571
Van91I CCANNNNNTGG 2 cut(s) 1466, 1755
Vha464I CTTAAG 2 cut(s) 302, 1681
VpaK11BI GGWCC 2 cut(s) 1482, 2543
VspI ATTAAT 3 cut(s) 699, 2288, 3230
XagI CCTNNNNNAGG 1 cut(s) 2052
XceI RCATGY 3 cut(s) 605, 1228, 2070
XcmI CCANNNNNNNNNTGG 2 cut(s) 227, 2955
XmiI GTMKAC 1 cut(s) 2986
XmnI GAANNNNTTC 3 cut(s) 186, 781, 1643
XspI CTAG 4 cut(s) 111, 765, 896, 2628
ZrmI AGTACT 1 cut(s) 496
Zsp2I ATGCAT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.