pycom13g26240

IQ-DOMAIN 14-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0006182
Physical Location & Seq
Forward (+)
22935096 .. 22939135
4040 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1590 bp
ATGGGAAAGAAAAGGAGTTGGTTTTCCGCCATAAGGAGGGTTTTCGCGCCGCATGCCAAGGACAAGGCAGCCAATGGTTCAGAGAAGAAAAACACAAATGAAAAGAAGAAGGGGCTTGGGAAACTAAAGCATGGAGAGACCAATTCGTTCATTCCGCTGTTCAGAGAACCAAGCAGCATTGAGAAAATTTTTGGGGATTTTGAAAGGGAGCAACAAAGAGAAACTTTTAGGCCTCCTACACCTGATGAGCAACCAAGGACCCCGCCTTTTGTGCCTCCTAGAGTTTCTTCTCCGAGGCTTGCCTCGCCAAGGGCTCCTTCTACACGGGCTCCTCCTCCAAGAGCTCCTCCTCCAAGAGATCGATCTCCTAACATCATTCATCAACATAAGGAGATTAGCTACAGACCTGAACCAACTCTAAGGAACCACCATGCCTCAGCTACTAAAATTCAGGCAGCCTATAGAGGTTATACGGCAAGAAGAAGCTTTAGAGCTCTAAAAGGTCTAGTGAGGCTTCAAGGAGTAGTAAGAGGCCAGAACGTGAAGCGTCAGACGATGAATGCCATGAAATACATGCAACTCTTGGTACGGGTTCAGTCTCAAATTCAGTCACGTAGGATTCAGATGTTAGAAAACCAAGCAAGACATCAAGTTCAATACAAGAATGACAGAGAAATGGAAAGCACCTTCAGTAAATGGAACTTGAGCCAGCAATCTGAGACAGCCAATAACGAGGAATGGGATGATAGCTTGCTAACTAAGGAGGAAGTAGAGGCAAGGTTGCAGAAAAAGGTTGAGGCAATCATGAAAAGAGAAAGAGCAATGGCTTACGCATACTCCAACCAGCTGTGGAAAGCTACTCCAAAATCAGGTCAAACACCTATAGCTGATATCTGGTCTGGGCGATTTCGGTGGTGGTGGAACTGGTTGGAACGTCAGCTCCCTGCAGTAGACCCTCCTGCGGGAACCAACGCGTTGAAAACTTTTCAGTTTACTCCTCCAAGACTTGATTCAGAGCGCCCCCTGCCCCAGTCAAGCAATCAAAAGCCACATCCTTTTCCATTTGATAACAATCTTGACACACCAAAATCGTCAAGGTCAACCATTAATCTCACAACAATAAAACCAGCACGAACCCCGCCTTTGATTAATACGAGTAGGGCTCCACAAGGAAACAGGTTTGGGATATCGAAGTACGTAAGAACAACTGCTGGTGAAGCTGAATCCCCTTTTGTTTTTCCACTGAAGGATGATGACAGCCTCACAAGCTGCCCCCCATTTTCAGTTCCAAACTACATGGCTCCAACAGCGTCAGCCAAAGCAAAGGCACGAGCTAGTAGCAATCCTAGGGAGAGATCTGTGGGGACACCAAGTAGTGAGTCCAAGAGAAGGCTTTCCTTTCCTTTGGCACAAGGCATTGGGTCTTTCAAGTGGAACAAAGCTTCTTCTTTCTCTAATAACAAGGATTGCAGCTCTCAAAGAAATTTAGACAAGAACCAGTCTTTGCAATCTCTAGGAAATTCGAGCATAGATTCCACGGTTTCGATGCCTGCAGGAGTTGGAAGGAAGCCATTTAACCGATTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

530

Amino Acids

60.04

Weight (kDa)

10.59

Isoelectric Point (pI)

61.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 409 - 484 2.4e-10 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 951
AccII CGCG 2 cut(s) 47, 974
AciI CCGC 6 cut(s) 27, 50, 155, 263, 962, 1139
AcsI RAATTY 5 cut(s) 186, 447, 603, 1483, 1519
AcuI CTGAAG 2 cut(s) 673, 1265
AfaI GTAC 2 cut(s) 588, 1196
AfiI CCNNNNNNNGG 7 cut(s) 33, 36, 309, 869, 961, 962, 1389
AflIII ACRYGT 1 cut(s) 972
AgsI TTSAA 5 cut(s) 203, 518, 656, 979, 1429
AjuI GAANNNNNNNTTGG 4 cut(s) 301, 333, 994, 1026
AloI GAACNNNNNNTCC 2 cut(s) 924, 956
Alw21I GWGCWC 2 cut(s) 346, 496
Alw26I GTCTC 3 cut(s) 131, 603, 713
AoxI GGCC 2 cut(s) 230, 532
ApeKI GCWGC 5 cut(s) 68, 174, 455, 1269, 1470
ApoI RAATTY 5 cut(s) 186, 447, 603, 1483, 1519
AseI ATTAAT 2 cut(s) 1107, 1149
Asp700I GAANNNNTTC 1 cut(s) 1393
AspA2I CCTAGG 1 cut(s) 1346
AspLEI GCGC 2 cut(s) 49, 1020
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 1226
AvaII GGWCC 1 cut(s) 258
AvrII CCTAGG 1 cut(s) 1346
BanII GRGCYC 5 cut(s) 316, 331, 346, 496, 1165
BauI CACGAG 1 cut(s) 1329
Bbv12I GWGCWC 2 cut(s) 346, 496
BbvCI CCTCAGC 1 cut(s) 436
BbvI GCAGC 5 cut(s) 80, 186, 467, 1256, 1482
BceAI ACGGC 1 cut(s) 489
BcoDI GTCTC 3 cut(s) 131, 603, 713
BfaI CTAG 5 cut(s) 279, 506, 1335, 1347, 1514
BfmI CTRYAG 5 cut(s) 400, 460, 882, 945, 1551
BfoI RGCGCY 1 cut(s) 1021
BglII AGATCT 1 cut(s) 1355
BisI GCNGC 6 cut(s) 50, 69, 175, 456, 1270, 1471
BlnI CCTAGG 1 cut(s) 1346
BlsI GCNGC 6 cut(s) 51, 70, 176, 457, 1271, 1472
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 7 cut(s) 260, 315, 330, 425, 967, 1164, 1302
BmrI ACTGGG 1 cut(s) 1024
BmsI GCATC 1 cut(s) 1536
BmuI ACTGGG 1 cut(s) 1024
BplI GAGNNNNNCTC 2 cut(s) 1147, 1179
Bpu10I CCTNAGC 1 cut(s) 436
BpuEI CTTGAG 1 cut(s) 724
Bsa29I ATCGAT 1 cut(s) 361
BsaAI YACGTR 2 cut(s) 614, 1198
BsaBI GATNNNNATC 1 cut(s) 1071
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 6 cut(s) 57, 254, 293, 308, 1346, 1536
BsaXI ACNNNNNCTCC 6 cut(s) 313, 343, 821, 851, 924, 954
Bsc4I CCNNNNNNNGG 7 cut(s) 33, 36, 309, 869, 961, 962, 1389
Bse1I ACTGG 3 cut(s) 929, 1030, 1498
Bse3DI GCAATG 1 cut(s) 828
Bse8I GATNNNNATC 1 cut(s) 1071
BseCI ATCGAT 1 cut(s) 361
BseDI CCNNGG 6 cut(s) 57, 254, 293, 308, 1346, 1536
BseGI GGATG 3 cut(s) 748, 1051, 1255
BseJI GATNNNNATC 1 cut(s) 1071
BseLI CCNNNNNNNGG 7 cut(s) 33, 36, 309, 869, 961, 962, 1389
BseMI GCAATG 1 cut(s) 828
BseMII CTCAG 2 cut(s) 450, 708
BseNI ACTGG 3 cut(s) 929, 1030, 1498
BseRI GAGGAG 5 cut(s) 321, 324, 336, 339, 987
BseXI GCAGC 5 cut(s) 80, 186, 467, 1256, 1482
Bsh1236I CGCG 2 cut(s) 47, 974
BshFI GGCC 2 cut(s) 232, 534
BshVI ATCGAT 1 cut(s) 361
BsiHKAI GWGCWC 2 cut(s) 346, 496
BslFI GGGAC 1 cut(s) 1378
BslI CCNNNNNNNGG 7 cut(s) 33, 36, 309, 869, 961, 962, 1389
BsmAI GTCTC 3 cut(s) 131, 603, 713
BsmFI GGGAC 1 cut(s) 1378
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 2 cut(s) 232, 534
Bso31I GGTCTC 1 cut(s) 131
Bsp1286I GDGCHC 5 cut(s) 316, 331, 346, 496, 1165
Bsp143I GATC 3 cut(s) 358, 362, 1355
BspACI CCGC 6 cut(s) 27, 50, 155, 263, 962, 1139
BspANI GGCC 2 cut(s) 232, 534
BspCNI CTCAG 2 cut(s) 449, 709
BspDI ATCGAT 1 cut(s) 361
BspFNI CGCG 2 cut(s) 47, 974
BspHI TCATGA 1 cut(s) 804
BspLI GGNNCC 7 cut(s) 260, 315, 330, 425, 967, 1164, 1302
BspMAI CTGCAG 2 cut(s) 949, 1555
BspTNI GGTCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 828
BsrI ACTGG 3 cut(s) 929, 1030, 1498
BssECI CCNNGG 6 cut(s) 57, 254, 293, 308, 1346, 1536
BssMI GATC 3 cut(s) 358, 362, 1355
BssSI CACGAG 1 cut(s) 1329
BssT1I CCWWGG 4 cut(s) 57, 254, 308, 1346
Bst2BI CACGAG 1 cut(s) 1329
Bst4CI ACNGT 1 cut(s) 1540
BstBAI YACGTR 2 cut(s) 614, 1198
BstC8I GCNNGC 5 cut(s) 54, 300, 710, 752, 1551
BstDEI CTNAG 4 cut(s) 419, 436, 717, 759
BstDSI CCRYGG 1 cut(s) 1536
BstENI CCTNNNNNAGG 1 cut(s) 307
BstF5I GGATG 3 cut(s) 748, 1051, 1255
BstFNI CGCG 2 cut(s) 47, 974
BstH2I RGCGCY 1 cut(s) 1021
BstHHI GCGC 2 cut(s) 49, 1020
BstKTI GATC 3 cut(s) 361, 365, 1358
BstMAI GTCTC 3 cut(s) 131, 603, 713
BstMBI GATC 3 cut(s) 358, 362, 1355
BstMWI GCNNNNNNNGC 7 cut(s) 53, 271, 304, 1024, 1217, 1266, 1307
BstNSI RCATGY 2 cut(s) 56, 577
BstSFI CTRYAG 5 cut(s) 400, 460, 882, 945, 1551
BstSNI TACGTA 1 cut(s) 1198
BstUI CGCG 2 cut(s) 47, 974
BstV1I GCAGC 5 cut(s) 80, 186, 467, 1256, 1482
BstX2I RGATCY 1 cut(s) 1355
BstYI RGATCY 1 cut(s) 1355
Bsu15I ATCGAT 1 cut(s) 361
BsuRI GGCC 2 cut(s) 232, 534
BsuTUI ATCGAT 1 cut(s) 361
BtgI CCRYGG 1 cut(s) 1536
BtsCI GGATG 3 cut(s) 748, 1051, 1255
BtsIMutI CAGTG 1 cut(s) 1241
Cac8I GCNNGC 5 cut(s) 54, 300, 710, 752, 1551
CciI TCATGA 1 cut(s) 804
CfoI GCGC 2 cut(s) 49, 1020
Cfr13I GGNCC 1 cut(s) 258
ClaI ATCGAT 1 cut(s) 361
CseI GACGC 2 cut(s) 536, 1299
Csp6I GTAC 2 cut(s) 587, 1195
CviAII CATG 7 cut(s) 53, 131, 431, 565, 574, 805, 1297
CviQI GTAC 2 cut(s) 587, 1195
DdeI CTNAG 4 cut(s) 419, 436, 717, 759
DpnI GATC 3 cut(s) 360, 364, 1357
DpnII GATC 3 cut(s) 358, 362, 1355
EciI GGCGGA 1 cut(s) 16
Ecl136II GAGCTC 2 cut(s) 344, 494
Eco105I TACGTA 1 cut(s) 1198
Eco130I CCWWGG 4 cut(s) 57, 254, 308, 1346
Eco147I AGGCCT 1 cut(s) 232
Eco24I GRGCYC 5 cut(s) 316, 331, 346, 496, 1165
Eco31I GGTCTC 1 cut(s) 131
Eco32I GATATC 2 cut(s) 892, 1188
Eco47I GGWCC 1 cut(s) 258
Eco53kI GAGCTC 2 cut(s) 344, 494
Eco57I CTGAAG 2 cut(s) 673, 1265
EcoICRI GAGCTC 2 cut(s) 344, 494
EcoNI CCTNNNNNAGG 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 258
EcoRV GATATC 2 cut(s) 892, 1188
EcoT14I CCWWGG 4 cut(s) 57, 254, 308, 1346
EcoT38I GRGCYC 5 cut(s) 316, 331, 346, 496, 1165
ErhI CCWWGG 4 cut(s) 57, 254, 308, 1346
FaeI CATG 7 cut(s) 56, 134, 434, 568, 577, 808, 1300
FalI AAGNNNNNCTT 4 cut(s) 208, 240, 301, 333
FaqI GGGAC 1 cut(s) 1378
FatI CATG 7 cut(s) 52, 130, 430, 564, 573, 804, 1296
FauI CCCGC 3 cut(s) 270, 955, 1146
FblI GTMKAC 1 cut(s) 951
Fnu4HI GCNGC 6 cut(s) 50, 69, 175, 456, 1270, 1471
FokI GGATG 3 cut(s) 755, 1038, 1262
FriOI GRGCYC 5 cut(s) 316, 331, 346, 496, 1165
Fsp4HI GCNGC 6 cut(s) 50, 69, 175, 456, 1270, 1471
FspBI CTAG 5 cut(s) 279, 506, 1335, 1347, 1514
GlaI GCGC 2 cut(s) 48, 1019
GluI GCNGC 6 cut(s) 50, 69, 175, 456, 1270, 1471
HaeII RGCGCY 1 cut(s) 1021
HaeIII GGCC 2 cut(s) 232, 534
HgaI GACGC 2 cut(s) 536, 1299
HhaI GCGC 2 cut(s) 49, 1020
Hin1II CATG 7 cut(s) 56, 134, 434, 568, 577, 808, 1300
Hin6I GCGC 2 cut(s) 47, 1018
HinP1I GCGC 2 cut(s) 47, 1018
HincII GTYRAC 1 cut(s) 1101
HindII GTYRAC 1 cut(s) 1101
HindIII AAGCTT 2 cut(s) 484, 1440
HinfI GANTC 5 cut(s) 619, 1010, 1223, 1379, 1532
HphI GGTGA 1 cut(s) 1226
Hpy166II GTNNAC 3 cut(s) 952, 993, 1101
Hpy188I TCNGA 7 cut(s) 82, 164, 294, 552, 624, 718, 1015
Hpy188III TCNNGA 2 cut(s) 805, 1076
Hpy8I GTNNAC 3 cut(s) 952, 993, 1101
HpyAV CCTTC 6 cut(s) 103, 327, 697, 1240, 1383, 1557
HpyCH4III ACNGT 1 cut(s) 1540
HpyCH4IV ACGT 4 cut(s) 540, 613, 934, 1197
HpyCH4V TGCA 6 cut(s) 577, 784, 947, 1470, 1507, 1553
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 271, 304, 1024, 1217, 1266, 1307
HpyF3I CTNAG 4 cut(s) 419, 436, 717, 759
HpySE526I ACGT 4 cut(s) 540, 613, 934, 1197
Hsp92II CATG 7 cut(s) 56, 134, 434, 568, 577, 808, 1300
HspAI GCGC 2 cut(s) 47, 1018
Kzo9I GATC 3 cut(s) 358, 362, 1355
LmnI GCTCC 7 cut(s) 208, 319, 334, 349, 945, 1168, 1306
Lsp1109I GCAGC 5 cut(s) 80, 186, 467, 1256, 1482
LweI GCATC 1 cut(s) 1536
MaeI CTAG 5 cut(s) 279, 506, 1335, 1347, 1514
MaeII ACGT 4 cut(s) 540, 613, 934, 1197
MaeIII GTNAC 1 cut(s) 609
MalI GATC 3 cut(s) 360, 364, 1357
MboI GATC 3 cut(s) 358, 362, 1355
MboII GAAGA 5 cut(s) 97, 118, 279, 492, 1437
MflI RGATCY 1 cut(s) 1355
MhlI GDGCHC 5 cut(s) 316, 331, 346, 496, 1165
MluCI AATT 6 cut(s) 142, 186, 447, 603, 1483, 1519
MluI ACGCGT 1 cut(s) 972
MlyI GAGTC 1 cut(s) 1388
MmeI TCCRAC 4 cut(s) 864, 909, 1328, 1540
MroXI GAANNNNTTC 1 cut(s) 1393
MseI TTAA 3 cut(s) 1107, 1149, 1575
MspA1I CMGCKG 2 cut(s) 157, 847
Mva1269I GAATGC 1 cut(s) 565
MvnI CGCG 2 cut(s) 47, 974
MwoI GCNNNNNNNGC 7 cut(s) 53, 271, 304, 1024, 1217, 1266, 1307
NdeII GATC 3 cut(s) 358, 362, 1355
NlaIII CATG 7 cut(s) 56, 134, 434, 568, 577, 808, 1300
NlaIV GGNNCC 7 cut(s) 260, 315, 330, 425, 967, 1164, 1302
NmuCI GTSAC 1 cut(s) 609
NspI RCATGY 2 cut(s) 56, 577
PaeI GCATGC 1 cut(s) 56
PagI TCATGA 1 cut(s) 804
PceI AGGCCT 1 cut(s) 232
PctI GAATGC 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 1393
PfeI GAWTC 4 cut(s) 619, 1010, 1223, 1532
PkrI GCNGC 6 cut(s) 51, 70, 176, 457, 1271, 1472
PleI GAGTC 1 cut(s) 1387
PpsI GAGTC 1 cut(s) 1387
Ppu21I YACGTR 2 cut(s) 614, 1198
PpuMI RGGWCCY 1 cut(s) 258
PshBI ATTAAT 2 cut(s) 1107, 1149
Psp124BI GAGCTC 2 cut(s) 346, 496
Psp5II RGGWCCY 1 cut(s) 258
PspN4I GGNNCC 7 cut(s) 260, 315, 330, 425, 967, 1164, 1302
PspPI GGNCC 1 cut(s) 258
PspPPI RGGWCCY 1 cut(s) 258
PstI CTGCAG 2 cut(s) 949, 1555
PsuI RGATCY 1 cut(s) 1355
PvuII CAGCTG 1 cut(s) 847
RsaI GTAC 2 cut(s) 588, 1196
RsaNI GTAC 2 cut(s) 587, 1195
SacI GAGCTC 2 cut(s) 346, 496
SaqAI TTAA 3 cut(s) 1107, 1149, 1575
SatI GCNGC 6 cut(s) 50, 69, 175, 456, 1270, 1471
Sau3AI GATC 3 cut(s) 358, 362, 1355
Sau96I GGNCC 1 cut(s) 258
SbfI CCTGCAGG 1 cut(s) 1555
SchI GAGTC 1 cut(s) 1388
SdaI CCTGCAGG 1 cut(s) 1555
SduI GDGCHC 5 cut(s) 316, 331, 346, 496, 1165
SfaNI GCATC 1 cut(s) 1536
SfcI CTRYAG 5 cut(s) 400, 460, 882, 945, 1551
SinI GGWCC 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
SnaBI TACGTA 1 cut(s) 1198
SphI GCATGC 1 cut(s) 56
Sse8387I CCTGCAGG 1 cut(s) 1555
Sse9I AATT 6 cut(s) 142, 186, 447, 603, 1483, 1519
SseBI AGGCCT 1 cut(s) 232
SsiI CCGC 6 cut(s) 27, 50, 155, 263, 962, 1139
SspMI CTAG 5 cut(s) 279, 506, 1335, 1347, 1514
SstI GAGCTC 2 cut(s) 346, 496
StuI AGGCCT 1 cut(s) 232
StyI CCWWGG 4 cut(s) 57, 254, 308, 1346
TaaI ACNGT 1 cut(s) 1540
TaiI ACGT 4 cut(s) 543, 616, 937, 1200
TaqI TCGA 4 cut(s) 361, 1190, 1523, 1544
TasI AATT 6 cut(s) 142, 186, 447, 603, 1483, 1519
TauI GCSGC 1 cut(s) 52
TfiI GAWTC 4 cut(s) 619, 1010, 1223, 1532
Tru1I TTAA 3 cut(s) 1107, 1149, 1575
Tru9I TTAA 3 cut(s) 1107, 1149, 1575
TscAI CASTG 1 cut(s) 1248
TseFI GTSAC 1 cut(s) 609
TseI GCWGC 5 cut(s) 68, 174, 455, 1269, 1470
Tsp45I GTSAC 1 cut(s) 609
TspDTI ATGAA 6 cut(s) 114, 139, 368, 572, 581, 821
TspRI CASTG 1 cut(s) 1248
VpaK11BI GGWCC 1 cut(s) 258
VspI ATTAAT 2 cut(s) 1107, 1149
XagI CCTNNNNNAGG 1 cut(s) 307
XapI RAATTY 5 cut(s) 186, 447, 603, 1483, 1519
XceI RCATGY 2 cut(s) 56, 577
XmaJI CCTAGG 1 cut(s) 1346
XmiI GTMKAC 1 cut(s) 951
XmnI GAANNNNTTC 1 cut(s) 1393
XspI CTAG 5 cut(s) 279, 506, 1335, 1347, 1514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.