Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0015158

Physical Location & Seq

Genomic Coordinates Reverse (-)

330544 .. 332742

Gene Structure 2199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCGGGTATGGGAGACGGATATGTGGGCACGGCTCAAGATGCCGTGAGGATTCGAAGACTCGAGAAGCAAAGAGAAGCCGAGCGCCAGAAAATTCATGAGCTCAAAAGCAAGTCGGCCTCCGATAACGGCCAGCCGGGTCTCCTCCAATTCGGATCAAGTACTTCTGAGATTCTTGAGACGGCATTTAAGAAAGAAACCATTGGTCTGGTTACAAGGGAGCAGTATGTGGAGAAGAAAGAAAATATTAAGAACAAATACGAGGAGGAAGAGAAGGAGAAACTTCAGAAGCTACAACAAGAGGAGGAGGAACTCCAATTACAAAAGCGAAAGAAGAGGAAGATAAAGGGGGGTTCTCGATTGTCCTTTGCAGATGAAGTTGAGGATGGAATTGAAGAGGAAGGTGGAGAAAATAAAAGCACAGAGGCTACAAGATTACGGTGTGGTAGACTTGGGAAAGATCCTACAGTGGAGACCAGCTTTCTGCCAGATAGTGAGCGGGAGGCAGAGGAACAAGCTGAGCGTGAAAGGTTGCGGAAGCAGTGGCAGACTGAGCAGGATAAAATAAGAAGGGAGTCACTTCAAATTACTTACAGCTATTGGGATGGAACTGGGCATAGGAGAGTGCTACAGGTAAAGAAGGGTGATAAAATTGGAGATTTCCTTAAGGCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009892 GO:0009987 GO:0010033 GO:0010099 GO:0010114 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0023052 GO:0031047 GO:0031050 GO:0032870 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035556 GO:0040029 GO:0042221 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071369 GO:0071407 GO:0071495 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XAP5

Protein Analysis

226

Amino Acids

26.04

Weight (kDa)

6.82

Isoelectric Point (pI)

62.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XAP5	PF04921	193 - 224	5.4e-06	XAP5, circadian clock regulator C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21150
fragaria_vesca	FvH4_1g25110
malus_domestica	MD12G1008800.v1.1 MD14G1006100.v1.1
prunus_persica	Prupe.7G010600_v2.0.a1 Prupe.7G010600_v2.0.a1
pyrus_communis	pycom12g00660 pycom14g00480
rosa_chinensis	RchiOBHm_Chr2g0122771
rosa_multiflora	Rmu_sc0008259.1_g000003
rosa_roxburghii	Rroxscaffold_2G00121240
rosa_rugosa	Rorug02G0242300
rosa_samantha	Rh2AG300500 Rh2CG287200
rosa_wichuraiana	Rw2G023870 Rw2G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	448
AciI	CCGC	2 cut(s)	499, 535
AclWI	GGATC	2 cut(s)	163, 455
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	1 cut(s)	163
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	2 cut(s)	395, 584
AluBI	AGCT	5 cut(s)	103, 292, 480, 518, 597
AluI	AGCT	5 cut(s)	103, 292, 480, 518, 597
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	4 cut(s)	9, 146, 173, 467
AlwI	GGATC	2 cut(s)	163, 455
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	2 cut(s)	117, 130
ApoI	RAATTY	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	87
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	656
AsuII	TTCGAA	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	105
BccI	CCATC	2 cut(s)	380, 599
BceAI	ACGGC	4 cut(s)	29, 48, 145, 198
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	4 cut(s)	9, 146, 173, 467
BfmI	CTRYAG	2 cut(s)	465, 629
BfoI	RGCGCY	1 cut(s)	88
BfrI	CTTAAG	1 cut(s)	665
BlpI	GCTNAGC	1 cut(s)	519
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	138
BmeT110I	CYCGRG	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	138
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	1 cut(s)	31
BmuI	ACTGGG	1 cut(s)	621
BpiI	GAAGAC	1 cut(s)	64
Bpu1102I	GCTNAGC	1 cut(s)	519
Bpu14I	TTCGAA	1 cut(s)	55
BpuEI	CTTGAG	2 cut(s)	21, 197
BpuMI	CCSGG	1 cut(s)	138
BsaI	GGTCTC	2 cut(s)	146, 467
Bse1I	ACTGG	1 cut(s)	616
BseGI	GGATG	2 cut(s)	391, 610
BseMII	CTCAG	3 cut(s)	159, 510, 543
BseNI	ACTGG	1 cut(s)	616
BseRI	GAGGAG	4 cut(s)	134, 278, 317, 320
BseSI	GKGCMC	1 cut(s)	32
BshFI	GGCC	2 cut(s)	119, 132
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	137
BsmAI	GTCTC	4 cut(s)	9, 146, 173, 467
BsmBI	CGTCTC	2 cut(s)	9, 173
BsnI	GGCC	2 cut(s)	119, 132
Bso31I	GGTCTC	2 cut(s)	146, 467
BsoBI	CYCGRG	1 cut(s)	62
Bsp119I	TTCGAA	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	32, 105
Bsp143I	GATC	2 cut(s)	155, 460
Bsp1720I	GCTNAGC	1 cut(s)	519
BspACI	CCGC	2 cut(s)	499, 535
BspANI	GGCC	2 cut(s)	119, 132
BspCNI	CTCAG	3 cut(s)	160, 511, 544
BspHI	TCATGA	1 cut(s)	97
BspPI	GGATC	2 cut(s)	163, 455
BspT104I	TTCGAA	1 cut(s)	55
BspTI	CTTAAG	1 cut(s)	665
BspTNI	GGTCTC	2 cut(s)	146, 467
BsrBI	CCGCTC	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	616
BssMI	GATC	2 cut(s)	155, 460
Bst4CI	ACNGT	2 cut(s)	441, 469
Bst6I	CTCTTC	3 cut(s)	264, 329, 390
BstAFI	CTTAAG	1 cut(s)	665
BstBI	TTCGAA	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	3 cut(s)	168, 519, 552
BstF5I	GGATG	2 cut(s)	391, 610
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	2 cut(s)	158, 463
BstMAI	GTCTC	4 cut(s)	9, 146, 173, 467
BstMBI	GATC	2 cut(s)	155, 460
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 553
BstSCI	CCNGG	1 cut(s)	136
BstSFI	CTRYAG	2 cut(s)	465, 629
BstSLI	GKGCMC	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	460
BstXI	CCANNNNNNTGG	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	119, 132
BtsCI	GGATG	2 cut(s)	391, 610
BtsI	GCAGTG	1 cut(s)	548
BtsIMutI	CAGTG	2 cut(s)	474, 548
Cac8I	GCNNGC	1 cut(s)	134
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	1 cut(s)	98
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	3 cut(s)	168, 519, 552
DpnI	GATC	2 cut(s)	157, 462
DpnII	GATC	2 cut(s)	155, 460
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	3 cut(s)	264, 329, 390
EarI	CTCTTC	3 cut(s)	264, 329, 390
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	2 cut(s)	146, 467
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	105
Esp3I	CGTCTC	2 cut(s)	9, 173
FaeI	CATG	1 cut(s)	101
FaiI	YATR	5 cut(s)	11, 24, 99, 228, 618
FatI	CATG	1 cut(s)	97
FauI	CCCGC	1 cut(s)	492
FblI	GTMKAC	1 cut(s)	448
FokI	GGATG	2 cut(s)	398, 617
FriOI	GRGCYC	1 cut(s)	105
GlaI	GCGC	1 cut(s)	86
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	119, 132
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	4 cut(s)	52, 60, 172, 575
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	4 cut(s)	124, 155, 169, 288
Hpy188III	TCNNGA	5 cut(s)	38, 64, 98, 176, 357
Hpy8I	GTNNAC	1 cut(s)	449
HpyAV	CCTTC	4 cut(s)	268, 395, 564, 634
HpyCH4III	ACNGT	2 cut(s)	441, 469
HpyCH4V	TGCA	1 cut(s)	371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 553
HpyF3I	CTNAG	3 cut(s)	168, 519, 552
Hsp92II	CATG	1 cut(s)	101
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	155, 460
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	9 cut(s)	101, 146, 150, 194, 490, 501, 542, 597, 617
LweI	GCATC	1 cut(s)	31
MaeIII	GTNAC	2 cut(s)	211, 576
MalI	GATC	2 cut(s)	157, 462
MbiI	CCGCTC	1 cut(s)	499
MboI	GATC	2 cut(s)	155, 460
MboII	GAAGA	6 cut(s)	69, 247, 281, 346, 352, 407
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	2 cut(s)	32, 105
MluCI	AATT	6 cut(s)	93, 149, 317, 390, 585, 651
MlyI	GAGTC	2 cut(s)	54, 584
MseI	TTAA	4 cut(s)	189, 249, 666, 676
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	41, 553
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	2 cut(s)	155, 460
NlaIII	CATG	1 cut(s)	101
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	576
NspV	TTCGAA	1 cut(s)	55
PaeR7I	CTCGAG	1 cut(s)	62
PagI	TCATGA	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	52, 172
PleI	GAGTC	2 cut(s)	54, 583
PpsI	GAGTC	2 cut(s)	54, 583
Psp124BI	GAGCTC	1 cut(s)	105
PsrI	GAACNNNNNNTAC	2 cut(s)	303, 335
PsuI	RGATCY	1 cut(s)	460
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	4 cut(s)	189, 249, 666, 676
Sau3AI	GATC	2 cut(s)	155, 460
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	2 cut(s)	54, 584
ScrFI	CCNGG	1 cut(s)	138
SduI	GDGCHC	2 cut(s)	32, 105
SetI	ASST	8 cut(s)	105, 294, 406, 482, 520, 533, 599, 636
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	2 cut(s)	465, 629
Sfr274I	CTCGAG	1 cut(s)	62
SfuI	TTCGAA	1 cut(s)	55
SlaI	CTCGAG	1 cut(s)	62
SmlI	CTYRAG	4 cut(s)	36, 62, 176, 665
SmoI	CTYRAG	4 cut(s)	36, 62, 176, 665
Sse9I	AATT	6 cut(s)	93, 149, 317, 390, 585, 651
SsiI	CCGC	2 cut(s)	499, 535
SspI	AATATT	1 cut(s)	247
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	441, 469
TaqI	TCGA	3 cut(s)	55, 63, 358
TasI	AATT	6 cut(s)	93, 149, 317, 390, 585, 651
TatI	WGTACW	1 cut(s)	161
TfiI	GAWTC	2 cut(s)	52, 172
Tru1I	TTAA	4 cut(s)	189, 249, 666, 676
Tru9I	TTAA	4 cut(s)	189, 249, 666, 676
TscAI	CASTG	2 cut(s)	474, 548
TseFI	GTSAC	1 cut(s)	576
Tsp45I	GTSAC	1 cut(s)	576
TspDTI	ATGAA	2 cut(s)	86, 390
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	2 cut(s)	474, 548
Vha464I	CTTAAG	1 cut(s)	665
XapI	RAATTY	1 cut(s)	93
XhoI	CTCGAG	1 cut(s)	62
XmiI	GTMKAC	1 cut(s)	448
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.