Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0016146

Physical Location & Seq

Genomic Coordinates Reverse (-)

2163415 .. 2166024

Gene Structure 2610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTGGGCAAGCAAAGAAGGAGGGCCGCCGGAGGTCACTCTAGAAACCACCACTGGCATCTTCACCGTCGAGCTTTACTACAAGCACGCGCCGAGGACTTGCAGGAACTTCATCGAGCTTGCTCGCAGAGGATACTATGACAATGTCAAATTCCACAGAATCATCAAGGATTTCATAGTGCAAGGTGATGATCCCACTGGGACAGGAAGGGGTGGAGAATCCATTTATGGGGGAAAGTTTGAGGATGAGATAAAACAAGAGTTGAAGCATACTGGAGCTGGCATCTTATCGATGGCGAATGCTGGTCCGAATACAAATGGAAGCCAGTTCTTTATCACGCTGGCACCGTGCCCATCATTGGATGGAAAGCACACAATATTTGGAAGGATCTGCAAAGGAATGGAGGTCATCAAAAAACTTGGCAGTGTCCAGACTGATAATACTGATAGACCGGTGCATGATGTGAAGATACTACGAACATCTGTCAAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

165

Amino Acids

18.16

Weight (kDa)

8.41

Isoelectric Point (pI)

22.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	12 - 162	8.1e-55	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36130
fragaria_vesca	FvH4_6g19480
malus_domestica	MD12G1030900.v1.1 MD14G1031400.v1.1
prunus_persica	Prupe.7G101500_v2.0.a1
pyrus_communis	pycom12g02890 pycom14g02830
rosa_chinensis	RchiOBHm_Chr3g0474811
rosa_laevigata	RLG00000023893
rosa_multiflora	Rmu_sc0004848.1_g000010
rosa_roxburghii	Rroxscaffold_6G00406830
rosa_rugosa	Rorug03G0144100
rosa_samantha	Rh3BG223700 Rh3CG218600
rosa_wichuraiana	Rw3G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	343
AccII	CGCG	1 cut(s)	89
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	2 cut(s)	185, 395
AcsI	RAATTY	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	228, 358
AgeI	ACCGGT	1 cut(s)	451
AgsI	TTSAA	1 cut(s)	265
AluBI	AGCT	3 cut(s)	73, 118, 278
AluI	AGCT	3 cut(s)	73, 118, 278
AlwI	GGATC	2 cut(s)	185, 395
AoxI	GGCC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	149
AsiGI	ACCGGT	1 cut(s)	451
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	23, 305
AsuHPI	GGTGA	2 cut(s)	55, 197
AvaII	GGWCC	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	343
BccI	CCATC	3 cut(s)	286, 356, 361
BciVI	GTATCC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	41
BfuI	GTATCC	1 cut(s)	125
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	23, 305
BmiI	GGNNCC	1 cut(s)	345
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	2 cut(s)	66, 291
BmuI	ACTGGG	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	294
Bsa29I	ATCGAT	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	92
BsaWI	WCCGGW	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 358
Bse118I	RCCGGY	1 cut(s)	451
Bse1I	ACTGG	4 cut(s)	58, 202, 277, 325
BseCI	ATCGAT	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	2 cut(s)	250, 367
BseLI	CCNNNNNNNGG	2 cut(s)	228, 358
BseNI	ACTGG	4 cut(s)	58, 202, 277, 325
BseSI	GKGCMC	1 cut(s)	353
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	25
BshNI	GGYRCC	1 cut(s)	343
BshTI	ACCGGT	1 cut(s)	451
BshVI	ATCGAT	1 cut(s)	290
BsiSI	CCGG	2 cut(s)	29, 452
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	2 cut(s)	228, 358
BsmFI	GGGAC	1 cut(s)	214
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	2 cut(s)	190, 387
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	25
BspDI	ATCGAT	1 cut(s)	290
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	345
BspPI	GGATC	2 cut(s)	185, 395
BspT107I	GGYRCC	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	451
BsrI	ACTGG	4 cut(s)	58, 202, 277, 325
BssAI	RCCGGY	1 cut(s)	451
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	2 cut(s)	190, 387
Bst4CI	ACNGT	2 cut(s)	67, 348
BstC8I	GCNNGC	6 cut(s)	10, 87, 120, 124, 280, 342
BstF5I	GGATG	2 cut(s)	250, 367
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	2 cut(s)	193, 390
BstMBI	GATC	2 cut(s)	190, 387
BstSLI	GKGCMC	1 cut(s)	353
BstUI	CGCG	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
Bsu15I	ATCGAT	1 cut(s)	290
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	25
BsuTUI	ATCGAT	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	250, 367
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	3 cut(s)	51, 195, 430
Cac8I	GCNNGC	6 cut(s)	10, 87, 120, 124, 280, 342
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	451
Cfr13I	GGNCC	2 cut(s)	23, 305
ClaI	ATCGAT	1 cut(s)	290
CspAI	ACCGGT	1 cut(s)	451
CviAII	CATG	1 cut(s)	458
CviJI	RGCY	5 cut(s)	25, 73, 118, 278, 324
CviKI_1	RGCY	5 cut(s)	25, 73, 118, 278, 324
DpnI	GATC	2 cut(s)	192, 389
DpnII	GATC	2 cut(s)	190, 387
Eco47I	GGWCC	1 cut(s)	305
FaeI	CATG	1 cut(s)	461
FaiI	YATR	5 cut(s)	138, 176, 228, 270, 459
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	2 cut(s)	257, 374
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	26
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	2 cut(s)	29, 452
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	461
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	2 cut(s)	159, 218
HpaII	CCGG	2 cut(s)	29, 452
HphI	GGTGA	2 cut(s)	55, 197
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	2 cut(s)	41, 430
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	11, 201, 378
HpyCH4III	ACNGT	2 cut(s)	67, 348
HpyCH4V	TGCA	4 cut(s)	102, 181, 393, 457
Hsp92II	CATG	1 cut(s)	461
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	190, 387
LmnI	GCTCC	1 cut(s)	275
LweI	GCATC	2 cut(s)	66, 291
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	192, 389
MboI	GATC	2 cut(s)	190, 387
MboII	GAAGA	2 cut(s)	52, 478
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	1 cut(s)	149
MnlI	CCTC	6 cut(s)	14, 25, 87, 122, 235, 397
MspI	CCGG	2 cut(s)	29, 452
Mva1269I	GAATGC	1 cut(s)	304
MvnI	CGCG	1 cut(s)	89
NdeII	GATC	2 cut(s)	190, 387
NlaIII	CATG	1 cut(s)	461
NlaIV	GGNNCC	1 cut(s)	345
NmeAIII	GCCGAG	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	344
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	159, 218
PflFI	GACNNNGTC	1 cut(s)	143
PinAI	ACCGGT	1 cut(s)	451
PkrI	GCNGC	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	2 cut(s)	23, 305
PsuI	RGATCY	1 cut(s)	387
PsyI	GACNNNGTC	1 cut(s)	143
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	2 cut(s)	190, 387
Sau96I	GGNCC	2 cut(s)	23, 305
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	6 cut(s)	36, 75, 120, 187, 280, 408
SfaNI	GCATC	2 cut(s)	66, 291
SinI	GGWCC	1 cut(s)	305
Sse9I	AATT	1 cut(s)	149
SsiI	CCGC	1 cut(s)	26
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	67, 348
TaqI	TCGA	3 cut(s)	69, 114, 290
TasI	AATT	1 cut(s)	149
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	2 cut(s)	159, 218
TscAI	CASTG	3 cut(s)	58, 202, 430
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	2 cut(s)	100, 163
TspRI	CASTG	3 cut(s)	58, 202, 430
Tth111I	GACNNNGTC	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	149
XbaI	TCTAGA	1 cut(s)	40
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.