Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0020449

Physical Location & Seq

Genomic Coordinates Forward (+)

6941095 .. 6942129

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g06980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCCTGATACAAAGAAGGTTGCCACTTTCAAGGGACACATGGAGCGGCTGACTGATGTTCAGTTTTCTCCTGTCCATAACCTCTTACCAACTGCCTCTGCTGACCGGACAGCAAGGTTGTGGAACACCGAAGGAACTCAGCTGGTGACATATAAGGGCCATTTGGACCATCTGGCACGAATTGCCTTCCATCCATCAGGAAAGTACTTGGGTACAACTAGCTTTGACCAGACATGGAGGTTATGGGATGTAGAAACTGGTGAAGAGTTGCTTCTTCAAGAGGGTCACAGTAGGAGTGTCTATGGGATAGACTTCCATCCCGATGGATCATTGGTGGGATCCTCTGGACTGGATGCACTGACTCATGTTTGGGACCTCCGTAATGGTAGAAGTTCTTGCACTCAGTTTCTCAGCAAATGGCTATTATTTAGCCACTGGGGACGAAGACAATACTTGCAGGATACGGGATTTACGAAAAAGAAATCCATATACACCATTCCAGCACATTCCAATCTCATATCACAGGTCAAGTTTGAGCCTCAAGAGGCATATTTCCTTGTAACTGCTTCATATGATTTGACAGCAAAGATATGGTCGGCCCAGGATTTTAAGCCGCTCTCTGGACATGAAGAAAAAGTTCCATCTTTGGATATTTCAGGAGTTAAGTTTCCTCGTCCAAGTTATGCAAATTTTTTTCATTATTATTTCTTGTTTCACCAACCTAAGGTATGCATGGACTTTATTCATAAAAAGTATGGATGGATTTTTTGGGTGTATGACTGTATCATGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001709 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007267 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009560 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0017070 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030312 GO:0030532 GO:0030621 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0045165 GO:0046483 GO:0046540 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 WD40

Protein Analysis

265

Amino Acids

30.49

Weight (kDa)

8.32

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020449)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g06980
rosa_laevigata	RLG00000024680
rosa_multiflora	Rmu_sc0002031.1_g000008 Rmu_sc0014550.1_g000012
rosa_samantha	Rh3BG135500 Rh3DG137100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	46, 616
AciI	CCGC	2 cut(s)	46, 614
AclWI	GGATC	3 cut(s)	333, 334, 346
AcsI	RAATTY	1 cut(s)	688
AfaI	GTAC	2 cut(s)	206, 214
AfiI	CCNNNNNNNGG	2 cut(s)	620, 724
AgsI	TTSAA	2 cut(s)	31, 278
AjnI	CCWGG	1 cut(s)	600
AluBI	AGCT	2 cut(s)	142, 222
AluI	AGCT	2 cut(s)	142, 222
AlwI	GGATC	3 cut(s)	333, 334, 346
AoxI	GGCC	2 cut(s)	157, 597
ApoI	RAATTY	1 cut(s)	688
ArsI	GACNNNNNNTTYG	2 cut(s)	578, 610
Asp700I	GAANNNNTTC	1 cut(s)	636
AspS9I	GGNCC	4 cut(s)	157, 166, 373, 598
AsuHPI	GGTGA	3 cut(s)	157, 272, 707
AvaII	GGWCC	2 cut(s)	166, 373
AxyI	CCTNAGG	1 cut(s)	723
BamHI	GGATCC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	451
BccI	CCATC	7 cut(s)	177, 198, 202, 317, 324, 649, 753
BciT130I	CCWGG	1 cut(s)	602
BciVI	GTATCC	1 cut(s)	454
BfaI	CTAG	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	454
BisI	GCNGC	2 cut(s)	47, 614
BlsI	GCNGC	2 cut(s)	48, 615
BmcAI	AGTACT	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	602
Bme18I	GGWCC	2 cut(s)	166, 373
BmgT120I	GGNCC	4 cut(s)	157, 166, 373, 598
BmiI	GGNNCC	2 cut(s)	340, 374
BmrFI	CCNGG	1 cut(s)	602
BmrI	ACTGGG	1 cut(s)	445
BmsI	GCATC	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	451
BpuEI	CTTGAG	1 cut(s)	525
BsaJI	CCNNGG	1 cut(s)	600
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	2 cut(s)	620, 724
Bse1I	ACTGG	3 cut(s)	262, 354, 440
Bse21I	CCTNAGG	1 cut(s)	723
BseBI	CCWGG	1 cut(s)	602
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	5 cut(s)	190, 253, 316, 358, 764
BseLI	CCNNNNNNNGG	2 cut(s)	620, 724
BseMII	CTCAG	3 cut(s)	152, 416, 424
BseNI	ACTGG	3 cut(s)	262, 354, 440
BshFI	GGCC	2 cut(s)	159, 599
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	3 cut(s)	48, 386, 453
BslI	CCNNNNNNNGG	2 cut(s)	620, 724
BsmFI	GGGAC	3 cut(s)	48, 386, 453
BsnI	GGCC	2 cut(s)	159, 599
Bsp143I	GATC	2 cut(s)	326, 338
BspACI	CCGC	2 cut(s)	46, 614
BspANI	GGCC	2 cut(s)	159, 599
BspCNI	CTCAG	3 cut(s)	151, 415, 423
BspLI	GGNNCC	2 cut(s)	340, 374
BspPI	GGATC	3 cut(s)	333, 334, 346
BsrBI	CCGCTC	2 cut(s)	46, 616
BsrI	ACTGG	3 cut(s)	262, 354, 440
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	2 cut(s)	326, 338
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	2 cut(s)	290, 782
Bst6I	CTCTTC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstDEI	CTNAG	4 cut(s)	138, 402, 410, 723
BstF5I	GGATG	5 cut(s)	190, 253, 316, 358, 764
BstKTI	GATC	2 cut(s)	329, 341
BstMBI	GATC	2 cut(s)	326, 338
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	600
BstV2I	GAAGAC	1 cut(s)	451
BstX2I	RGATCY	1 cut(s)	338
BstXI	CCANNNNNNTGG	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	338
Bsu36I	CCTNAGG	1 cut(s)	723
BsuI	GTATCC	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	159, 599
BtsCI	GGATG	5 cut(s)	190, 253, 316, 358, 764
BtsIMutI	CAGTG	2 cut(s)	356, 433
Cfr13I	GGNCC	4 cut(s)	157, 166, 373, 598
Csp6I	GTAC	2 cut(s)	205, 213
CviAII	CATG	6 cut(s)	40, 234, 365, 626, 733, 787
CviJI	RGCY	9 cut(s)	49, 142, 159, 222, 421, 432, 538, 599, 613
CviKI_1	RGCY	9 cut(s)	49, 142, 159, 222, 421, 432, 538, 599, 613
CviQI	GTAC	2 cut(s)	205, 213
DdeI	CTNAG	4 cut(s)	138, 402, 410, 723
DpnI	GATC	2 cut(s)	328, 340
DpnII	GATC	2 cut(s)	326, 338
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	166, 373
Eco81I	CCTNAGG	1 cut(s)	723
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	600
EcoT22I	ATGCAT	1 cut(s)	734
FaeI	CATG	6 cut(s)	43, 237, 368, 629, 736, 790
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	3 cut(s)	48, 386, 453
FatI	CATG	6 cut(s)	39, 233, 364, 625, 732, 786
FauNDI	CATATG	1 cut(s)	571
Fnu4HI	GCNGC	2 cut(s)	47, 614
FokI	GGATG	5 cut(s)	177, 260, 303, 365, 771
Fsp4HI	GCNGC	2 cut(s)	47, 614
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	2 cut(s)	47, 614
HaeIII	GGCC	2 cut(s)	159, 599
HapII	CCGG	1 cut(s)	106
Hin1II	CATG	6 cut(s)	43, 237, 368, 629, 736, 790
HinfI	GANTC	1 cut(s)	361
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	3 cut(s)	157, 272, 707
Hpy188III	TCNNGA	7 cut(s)	198, 278, 320, 345, 542, 621, 657
HpyAV	CCTTC	3 cut(s)	10, 125, 196
HpyCH4III	ACNGT	2 cut(s)	290, 782
HpyCH4V	TGCA	5 cut(s)	356, 399, 457, 686, 732
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	4 cut(s)	138, 402, 410, 723
Hsp92II	CATG	6 cut(s)	43, 237, 368, 629, 736, 790
Kzo9I	GATC	2 cut(s)	326, 338
LmnI	GCTCC	1 cut(s)	43
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	3 cut(s)	145, 284, 559
MalI	GATC	2 cut(s)	328, 340
MbiI	CCGCTC	2 cut(s)	46, 616
MboI	GATC	2 cut(s)	326, 338
MboII	GAAGA	4 cut(s)	266, 275, 456, 641
MflI	RGATCY	1 cut(s)	338
MluCI	AATT	2 cut(s)	180, 688
MlyI	GAGTC	1 cut(s)	355
MnlI	CCTC	9 cut(s)	92, 106, 231, 274, 352, 386, 538, 549, 681
Mph1103I	ATGCAT	1 cut(s)	734
MroXI	GAANNNNTTC	1 cut(s)	636
MseI	TTAA	2 cut(s)	609, 663
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	602
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	2 cut(s)	326, 338
NlaIII	CATG	6 cut(s)	43, 237, 368, 629, 736, 790
NlaIV	GGNNCC	2 cut(s)	340, 374
NmuCI	GTSAC	2 cut(s)	145, 284
NsiI	ATGCAT	1 cut(s)	734
PcsI	WCGNNNNNNNCGW	1 cut(s)	470
PdmI	GAANNNNTTC	1 cut(s)	636
PkrI	GCNGC	2 cut(s)	48, 615
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PpuMI	RGGWCCY	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	2 cut(s)	340, 374
PspPI	GGNCC	4 cut(s)	157, 166, 373, 598
PspPPI	RGGWCCY	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	2 cut(s)	206, 214
RsaNI	GTAC	2 cut(s)	205, 213
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	609, 663
SatI	GCNGC	2 cut(s)	47, 614
Sau3AI	GATC	2 cut(s)	326, 338
Sau96I	GGNCC	4 cut(s)	157, 166, 373, 598
ScaI	AGTACT	1 cut(s)	206
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	1 cut(s)	602
SfaNI	GCATC	1 cut(s)	343
SinI	GGWCC	2 cut(s)	166, 373
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	540
SmoI	CTYRAG	1 cut(s)	540
Sse9I	AATT	2 cut(s)	180, 688
SsiI	CCGC	2 cut(s)	46, 614
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	600
TaaI	ACNGT	2 cut(s)	290, 782
TasI	AATT	2 cut(s)	180, 688
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	2 cut(s)	49, 616
Tru1I	TTAA	2 cut(s)	609, 663
Tru9I	TTAA	2 cut(s)	609, 663
TscAI	CASTG	2 cut(s)	363, 440
TseFI	GTSAC	2 cut(s)	145, 284
Tsp45I	GTSAC	2 cut(s)	145, 284
TspDTI	ATGAA	4 cut(s)	558, 642, 686, 734
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	2 cut(s)	363, 440
VpaK11BI	GGWCC	2 cut(s)	166, 373
XapI	RAATTY	1 cut(s)	688
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	1 cut(s)	219
ZrmI	AGTACT	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.