Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0020449

Physical Location & Seq

Genomic Coordinates Forward (+)

38155779 .. 38156449

Gene Structure 671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024680

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCCTTCCATCCTCGGAGAAAGACTTGGGCACTACTATCGCTTTGACAACAATGCTTATCACTTGGGTGACTTGGCCACCGGAGGCGAAGGCAACACTCGTAAGATATGGGATTTAAGAATAAGGAATTCCATATACATTGTTGGACGCTCCAAGCCCACATCACAGGTCAAGTTTGAGCCTCAAGATGGACACTTCTTGGTAACGGGTTCGTATGTTACCACAGCAAAGATATGGTCAGCCCGAGAATTTAAGGCTGTGAAGACATTCGTCCGGAGATGGTTATCAGTTTATCACATTGCTAGTGTTTCACATGTCCCAACCATTAAACTATGGTCACGCAGAACCAATAAGGACCAGGATGCAGGACAGGCTGAATTTGCAGAAGACCAAGCTTCGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001709 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007267 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009560 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0017070 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030312 GO:0030532 GO:0030621 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0045165 GO:0046483 GO:0046540 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 WD40

Protein Analysis

135

Amino Acids

15.32

Weight (kDa)

9.74

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	15 - 90	2.7e-06	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	25 - 90	1.7e-06	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	25 - 93	1.4e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0020449)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g06980
rosa_laevigata	RLG00000024680
rosa_multiflora	Rmu_sc0002031.1_g000008 Rmu_sc0014550.1_g000012
rosa_samantha	Rh3BG135500 Rh3DG137100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	273
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	3 cut(s)	127, 248, 377
AfiI	CCNNNNNNNGG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	357
AleI	CACNNNNGTG	1 cut(s)	66
AluBI	AGCT	1 cut(s)	395
AluI	AGCT	1 cut(s)	395
Ama87I	CYCGRG	1 cut(s)	243
Aor13HI	TCCGGA	1 cut(s)	273
AoxI	GGCC	1 cut(s)	75
ApoI	RAATTY	3 cut(s)	127, 248, 377
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
Asp700I	GAANNNNTTC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	33
BalI	TGGCCA	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	269, 393
BccI	CCATC	3 cut(s)	17, 182, 273
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	1 cut(s)	359
BfaI	CTAG	1 cut(s)	303
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	1 cut(s)	355
BmeT110I	CYCGRG	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	355
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	352
BoxI	GACNNNNGTC	1 cut(s)	269
BpiI	GAAGAC	2 cut(s)	269, 393
BpuEI	CTTGAG	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	13
BsaWI	WCCGGW	2 cut(s)	80, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	297
Bse8I	GATNNNNATC	1 cut(s)	283
BseAI	TCCGGA	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	2 cut(s)	9, 367
BseJI	GATNNNNATC	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	1 cut(s)	297
BseSI	GKGCMC	1 cut(s)	33
BshFI	GGCC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	243
BsiSI	CCGG	2 cut(s)	81, 274
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp13I	TCCGGA	1 cut(s)	273
BspANI	GGCC	1 cut(s)	77
BspEI	TCCGGA	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	359
BstF5I	GGATG	2 cut(s)	9, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 380
BstNI	CCWGG	1 cut(s)	359
BstNSI	RCATGY	1 cut(s)	317
BstPAI	GACNNNNGTC	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	33
BstV2I	GAAGAC	2 cut(s)	269, 393
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	9, 367
Cfr13I	GGNCC	1 cut(s)	355
CseI	GACGC	1 cut(s)	156
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	7 cut(s)	77, 157, 181, 242, 257, 374, 395
CviKI_1	RGCY	7 cut(s)	77, 157, 181, 242, 257, 374, 395
EaeI	YGGCCR	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	355
Eco88I	CYCGRG	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	357
FaeI	CATG	1 cut(s)	317
FaiI	YATR	7 cut(s)	109, 134, 136, 216, 235, 315, 334
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	1 cut(s)	313
FokI	GGATG	1 cut(s)	374
FspBI	CTAG	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	2 cut(s)	81, 274
HgaI	GACGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	317
HindIII	AAGCTT	1 cut(s)	393
HpaII	CCGG	2 cut(s)	81, 274
HphI	GGTGA	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	2 cut(s)	185, 274
HpyAV	CCTTC	2 cut(s)	15, 83
HpyCH4V	TGCA	2 cut(s)	365, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 380
Hsp92II	CATG	1 cut(s)	317
Kpn2I	TCCGGA	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	7 cut(s)	94, 152, 287, 344, 351, 356, 371
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	4 cut(s)	68, 202, 217, 336
MboII	GAAGA	2 cut(s)	274, 398
MhlI	GDGCHC	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	3 cut(s)	127, 248, 377
MluNI	TGGCCA	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	3 cut(s)	23, 77, 192
Mox20I	TGGCCA	1 cut(s)	77
MroI	TCCGGA	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	4 cut(s)	116, 252, 327, 403
MslI	CAYNNNNRTG	1 cut(s)	66
Msp20I	TGGCCA	1 cut(s)	77
MspI	CCGG	2 cut(s)	81, 274
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	371, 380
NlaIII	CATG	1 cut(s)	317
NmuCI	GTSAC	2 cut(s)	68, 336
NspI	RCATGY	1 cut(s)	317
OliI	CACNNNNGTG	1 cut(s)	66
PciI	ACATGT	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	266
PscI	ACATGT	1 cut(s)	313
PshAI	GACNNNNGTC	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspPI	GGNCC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	4 cut(s)	116, 252, 327, 403
Sau96I	GGNCC	1 cut(s)	355
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	2 cut(s)	171, 397
SfaNI	GCATC	1 cut(s)	352
SinI	GGWCC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
Sse9I	AATT	3 cut(s)	127, 248, 377
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	357
TaqI	TCGA	1 cut(s)	398
TasI	AATT	3 cut(s)	127, 248, 377
Tru1I	TTAA	4 cut(s)	116, 252, 327, 403
Tru9I	TTAA	4 cut(s)	116, 252, 327, 403
TseFI	GTSAC	2 cut(s)	68, 336
Tsp45I	GTSAC	2 cut(s)	68, 336
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	3 cut(s)	127, 248, 377
XceI	RCATGY	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.