Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0020449

Physical Location & Seq

Genomic Coordinates Reverse (-)

11488750 .. 11489088

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG135500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGATTTACCGATTTAAGCATAAGGAATTCCATATACATTGTTGGACACTCCAAGTCCATATCACAGGTCGAGTTTGAGACTCAAGATGGACACTTCTTGGTAACTGCTTCGTATGTTACTACAGCAAAGATAAGGTCAGCCCGAGAATTTAAGGTTGTGAGGACACTCGTCCGAGTCTCCAGACATGAAGCGAAAGTTGCTTCTTTGGATGTTTCAGGAGATGGTTATCACATTGCTACTGTTTCACATGTCCCAACCATTAAACTGTCCCGCAGAACCAGTAAGGACCAGGATGTAGGACAGGCTGAATTTGCAGAAGACCAAGCTTCGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001709 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007267 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009560 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0017070 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030312 GO:0030532 GO:0030621 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0045165 GO:0046483 GO:0046540 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 WD40

Protein Analysis

112

Amino Acids

12.37

Weight (kDa)

8.1

Isoelectric Point (pI)

26.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	3 - 90	1e-06	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	14 - 95	1.6e-07	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	14 - 97	7.9e-07	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	15 - 92	1.7e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020449)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g06980
rosa_laevigata	RLG00000024680
rosa_multiflora	Rmu_sc0002031.1_g000008 Rmu_sc0014550.1_g000012
rosa_samantha	Rh3BG135500 Rh3DG137100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	274
AcsI	RAATTY	3 cut(s)	28, 149, 311
AflIII	ACRYGT	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw26I	GTCTC	2 cut(s)	74, 184
Ama87I	CYCGRG	1 cut(s)	144
ApoI	RAATTY	3 cut(s)	28, 149, 311
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
AspS9I	GGNCC	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	327
BccI	CCATC	2 cut(s)	83, 218
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	2 cut(s)	74, 184
BfmI	CTRYAG	1 cut(s)	123
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	289
BmrFI	CCNGG	1 cut(s)	293
BoxI	GACNNNNGTC	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	327
BpmI	CTGGAG	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	234
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	293
BseGI	GGATG	2 cut(s)	217, 301
BseJI	GATNNNNATC	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	144
BslFI	GGGAC	2 cut(s)	239, 256
BsmAI	GTCTC	2 cut(s)	74, 184
BsmFI	GGGAC	2 cut(s)	239, 256
BsoBI	CYCGRG	1 cut(s)	144
BspACI	CCGC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	244, 270
BstF5I	GGATG	2 cut(s)	217, 301
BstMAI	GTCTC	2 cut(s)	74, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 314
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	254
BstPAI	GACNNNNGTC	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	217, 301
Cfr13I	GGNCC	1 cut(s)	289
CviAII	CATG	2 cut(s)	188, 251
CviJI	RGCY	3 cut(s)	143, 308, 329
CviKI_1	RGCY	3 cut(s)	143, 308, 329
Eco47I	GGWCC	1 cut(s)	289
Eco88I	CYCGRG	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	291
FaeI	CATG	2 cut(s)	191, 254
FaiI	YATR	7 cut(s)	23, 35, 37, 62, 117, 189, 252
FaqI	GGGAC	2 cut(s)	239, 256
FatI	CATG	2 cut(s)	187, 250
FauI	CCCGC	1 cut(s)	281
FokI	GGATG	2 cut(s)	224, 308
GsuI	CTGGAG	1 cut(s)	166
Hin1II	CATG	2 cut(s)	191, 254
HindIII	AAGCTT	1 cut(s)	327
HinfI	GANTC	2 cut(s)	82, 177
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	3 cut(s)	86, 183, 219
HpyCH4III	ACNGT	2 cut(s)	244, 270
HpyCH4V	TGCA	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 314
Hsp92II	CATG	2 cut(s)	191, 254
LpnPI	CCDG	7 cut(s)	53, 196, 204, 278, 290, 295, 305
MaeIII	GTNAC	2 cut(s)	103, 118
MboII	GAAGA	1 cut(s)	332
MluCI	AATT	3 cut(s)	28, 149, 311
MlyI	GAGTC	2 cut(s)	76, 186
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	1 cut(s)	156
MseI	TTAA	4 cut(s)	17, 153, 264, 337
MspR9I	CCNGG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	200, 314
NlaIII	CATG	2 cut(s)	191, 254
NspI	RCATGY	1 cut(s)	254
PciI	ACATGT	1 cut(s)	250
PleI	GAGTC	2 cut(s)	76, 185
PpsI	GAGTC	2 cut(s)	76, 185
PscI	ACATGT	1 cut(s)	250
PshAI	GACNNNNGTC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	289
SaqAI	TTAA	4 cut(s)	17, 153, 264, 337
Sau96I	GGNCC	1 cut(s)	289
SchI	GAGTC	2 cut(s)	76, 186
ScrFI	CCNGG	1 cut(s)	293
SetI	ASST	4 cut(s)	72, 140, 159, 331
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	3 cut(s)	28, 149, 311
SsiI	CCGC	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	244, 270
TaqI	TCGA	2 cut(s)	72, 332
TasI	AATT	3 cut(s)	28, 149, 311
Tru1I	TTAA	4 cut(s)	17, 153, 264, 337
Tru9I	TTAA	4 cut(s)	17, 153, 264, 337
TspDTI	ATGAA	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	3 cut(s)	28, 149, 311
XceI	RCATGY	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.