Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0015313

Physical Location & Seq

Genomic Coordinates Forward (+)

15508923 .. 15510965

Gene Structure 2043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTAGACTTCGCTAGGGTTCAGAAGGAGCTTCAGGAATGCAGCAGAGACATCGAGCGCTCCGGCATCAAAGTCATCCCCAAAAACGAAGCCACTCTTGCCCGTTTAATCGGAACAATTCCCGGCCCAGTTGGTACTCCTTATGAGGGCGGCACTTTCCAGATCGACATCGCATTGCCAGATGCGTACCCTTTTGAGCCTCCCAAAATGCAGTTTACGACCAAAGTTTGGCACCCTAATATTAGCAGTCAAAGTGGAGCAATTTGTCTGGATATTTTGAAAGACCAATGGAGCCCAGCTCTTACACTGAAGACAGCACTTCTTTCTGTACAAGCTTTGCTTTCTGCTCCTCAGCCGGATGATCCTCAAGATGCTGTGGTGGCACAACAGTATCTGAAAGACTATCAGACCTTTGTTGGCACAGCTCGGTACTGGACAGAAACATTTGCCAAGAAATCATCTCTTGGGATTGGTGAAAAGGTACAGAAGCTTGTTGAGATGGGCTTCCCTGAAGCTCAGGCAAGGAGTACTCTGGAAGCCGTTGGTGGGGATGAGAACTTGGCCCTCGAAAAGCTTTGCTCCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UBA UQ_con

Protein Analysis

196

Amino Acids

21.33

Weight (kDa)

4.99

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	6 - 145	4.2e-45	Ubiquitin-conjugating enzyme
UBA	PF00627	159 - 192	9e-07	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50870
fragaria_vesca	FvH4_5g09050
malus_domestica	MD06G1134200.v1.1 MD14G1150500.v1.1
prunus_persica	Prupe.5G145200_v2.0.a1
pyrus_communis	pycom06g12530 pycom14g12500
rosa_chinensis	RchiOBHm_Chr7g0189161
rosa_laevigata	RLG00000004627
rosa_multiflora	Rmu_sc0007859.1_g000011
rosa_roxburghii	Rroxscaffold_3G00265740
rosa_rugosa	Rorug06G0496300
rosa_samantha	Rh7AG101100 Rh7BG103700 Rh7CG105100
rosa_wichuraiana	Rw7G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	231
AccB7I	CCANNNNNTGG	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	356
AcuI	CTGAAG	3 cut(s)	17, 329, 531
AfaI	GTAC	6 cut(s)	136, 188, 330, 431, 483, 529
AfeI	AGCGCT	1 cut(s)	59
AfiI	CCNNNNNNNGG	3 cut(s)	146, 228, 546
AgsI	TTSAA	1 cut(s)	280
AluBI	AGCT	7 cut(s)	31, 299, 335, 425, 490, 515, 574
AluI	AGCT	7 cut(s)	31, 299, 335, 425, 490, 515, 574
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	356
AlwNI	CAGNNNCTG	1 cut(s)	394
Aor51HI	AGCGCT	1 cut(s)	59
AoxI	GGCC	2 cut(s)	124, 561
ApeKI	GCWGC	1 cut(s)	42
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	125, 562
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	485
BaeI	ACNNNNGTAYC	2 cut(s)	374, 407
BanI	GGYRCC	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	317
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	493
BceAI	ACGGC	1 cut(s)	524
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	61
BisI	GCNGC	2 cut(s)	43, 151
BlsI	GCNGC	2 cut(s)	44, 152
BmcAI	AGTACT	1 cut(s)	529
Bme1390I	CCNGG	1 cut(s)	123
BmgT120I	GGNCC	2 cut(s)	125, 562
BmiI	GGNNCC	2 cut(s)	233, 293
BmrFI	CCNGG	1 cut(s)	123
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	3 cut(s)	75, 172, 361
BmuI	ACTGGG	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	317
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
Bpu10I	CCTNAGC	2 cut(s)	351, 516
BpuEI	CTTGAG	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	167
BsaWI	WCCGGW	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 228, 546
Bse1I	ACTGG	2 cut(s)	128, 437
Bse3DI	GCAATG	1 cut(s)	173
Bse8I	GATNNNNATC	1 cut(s)	167
BseGI	GGATG	3 cut(s)	75, 364, 556
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	3 cut(s)	146, 228, 546
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	2 cut(s)	365, 530
BseNI	ACTGG	2 cut(s)	128, 437
BseRI	GAGGAG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	54
BseYI	CCCAGC	1 cut(s)	295
BshFI	GGCC	2 cut(s)	126, 563
BshNI	GGYRCC	1 cut(s)	231
BsiSI	CCGG	4 cut(s)	63, 123, 356, 582
BslI	CCNNNNNNNGG	3 cut(s)	146, 228, 546
BsmAI	GTCTC	1 cut(s)	42
BsmI	GAATGC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	126, 563
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	162, 361
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	2 cut(s)	126, 563
BspCNI	CTCAG	2 cut(s)	364, 529
BspLI	GGNNCC	2 cut(s)	233, 293
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	231
BsrDI	GCAATG	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	328
BsrI	ACTGG	2 cut(s)	128, 437
BssMI	GATC	2 cut(s)	162, 361
Bst4CI	ACNGT	1 cut(s)	390
BstAUI	TGTACA	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	351, 516
BstF5I	GGATG	3 cut(s)	75, 364, 556
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	2 cut(s)	165, 364
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	2 cut(s)	162, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 380
BstSCI	CCNGG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	126, 563
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	3 cut(s)	75, 364, 556
BtsIMutI	CAGTG	1 cut(s)	305
CaiI	CAGNNNCTG	1 cut(s)	394
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	125, 562
Csp6I	GTAC	6 cut(s)	135, 187, 329, 430, 482, 528
CviQI	GTAC	6 cut(s)	135, 187, 329, 430, 482, 528
DdeI	CTNAG	2 cut(s)	351, 516
DpnI	GATC	2 cut(s)	164, 363
DpnII	GATC	2 cut(s)	162, 361
Eco24I	GRGCYC	1 cut(s)	296
Eco47III	AGCGCT	1 cut(s)	59
Eco57I	CTGAAG	3 cut(s)	17, 329, 531
EcoT38I	GRGCYC	1 cut(s)	296
FaiI	YATR	1 cut(s)	144
FalI	AAGNNNNNCTT	4 cut(s)	81, 113, 324, 356
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	43, 151
FokI	GGATG	3 cut(s)	62, 371, 563
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	43, 151
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	2 cut(s)	43, 151
GsaI	CCCAGC	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	126, 563
HapII	CCGG	4 cut(s)	63, 123, 356, 582
HhaI	GCGC	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HindIII	AAGCTT	3 cut(s)	333, 488, 572
HpaII	CCGG	4 cut(s)	63, 123, 356, 582
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	2 cut(s)	7, 216
Hpy188I	TCNGA	4 cut(s)	24, 113, 396, 408
Hpy188III	TCNNGA	5 cut(s)	35, 160, 269, 368, 533
Hpy8I	GTNNAC	2 cut(s)	7, 216
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	390
HpyCH4V	TGCA	2 cut(s)	42, 211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 380
HpyF3I	CTNAG	2 cut(s)	351, 516
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	162, 361
LmnI	GCTCC	6 cut(s)	28, 65, 257, 291, 352, 584
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	3 cut(s)	75, 172, 361
MaeI	CTAG	1 cut(s)	15
MalI	GATC	2 cut(s)	164, 363
MboI	GATC	2 cut(s)	162, 361
MboII	GAAGA	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	2 cut(s)	117, 261
MnlI	CCTC	5 cut(s)	139, 210, 360, 375, 575
MseI	TTAA	1 cut(s)	107
MspI	CCGG	4 cut(s)	63, 123, 356, 582
MspR9I	CCNGG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	98, 380
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	2 cut(s)	162, 361
NlaIV	GGNNCC	2 cut(s)	233, 293
PctI	GAATGC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	44, 152
PspFI	CCCAGC	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	233, 293
PspPI	GGNCC	2 cut(s)	125, 562
PstNI	CAGNNNCTG	1 cut(s)	394
RsaI	GTAC	6 cut(s)	136, 188, 330, 431, 483, 529
RsaNI	GTAC	6 cut(s)	135, 187, 329, 430, 482, 528
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	2 cut(s)	43, 151
Sau3AI	GATC	2 cut(s)	162, 361
Sau96I	GGNCC	2 cut(s)	125, 562
ScaI	AGTACT	1 cut(s)	529
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	9 cut(s)	33, 301, 337, 413, 427, 483, 492, 517, 576
SfaNI	GCATC	3 cut(s)	75, 172, 361
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	2 cut(s)	117, 261
SsiI	CCGC	1 cut(s)	150
SspI	AATATT	1 cut(s)	241
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	390
TaqI	TCGA	3 cut(s)	54, 165, 567
TasI	AATT	2 cut(s)	117, 261
TatI	WGTACW	2 cut(s)	328, 527
TauI	GCSGC	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	1 cut(s)	42
TspRI	CASTG	1 cut(s)	312
Van91I	CCANNNNNTGG	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.