pycom14g15270

Belongs to the spermidine spermine synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0019232
Physical Location & Seq
Forward (+)
17930704 .. 17931523
820 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
ATGCATGCAGGGCCGGATCATGAGCTTCACAAGACTCCCTTCTTTGAGTTGGTAGCAAAAGCCCTCCGACCTGGCGGAGTCATGTGTATTCAAGCAGAGAGCATATGGTTTCGTTCTTTAGACATTGAGCAACTCATGGCCAAATGTCGACCAATATTCAAAGGCTCTGTTCAGTATGCATGGACAATTGTTCCTGCATATCCAAGTGGGGTGATTGGTTTCTTGCTTTGCTCCACGGAGGGGCCACTGGTGGATTTCAGAAATCCTGTCAACCCAATAGACCCCAACAATAGTTATGGGATTGCAAAAGAGCCCCTGAAATTTTACAACACAGAGGTGCACATGGCTGCATTTTGTTTGCCATCTTTTGCAAAGAAGGTGAATAATGGGTCTAAAGTGAATGGAGTTGGAACGCTCGCAGCTGATGAGGCAAAACACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100
Pfam Domains
Protein Families
Spermine_synt_N Spermine_synth

Protein Analysis

148

Amino Acids

16.16

Weight (kDa)

8.35

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Spermine_synth PF01564 4 - 87 2.7e-18 Spermine/spermidine synthase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019232)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05120 FvH4_5g05120
malus_domestica MD06G1177500.v1.1
pyrus_communis pycom14g15270
rosa_roxburghii Rroxscaffold_3G00261740
rosa_rugosa Rorug07G0012500
rosa_samantha Rh7AG139300 Rh7CG143500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 148
AciI CCGC 1 cut(s) 75
AclWI GGATC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 2 cut(s) 92, 160
AjnI CCWGG 1 cut(s) 70
AleI CACNNNNGTG 1 cut(s) 335
AluBI AGCT 2 cut(s) 25, 422
AluI AGCT 2 cut(s) 25, 422
Alw21I GWGCWC 1 cut(s) 342
Alw44I GTGCAC 1 cut(s) 338
AlwI GGATC 1 cut(s) 24
AoxI GGCC 3 cut(s) 11, 138, 242
ApaLI GTGCAC 1 cut(s) 338
ApeKI GCWGC 2 cut(s) 347, 419
ApoI RAATTY 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 11, 242
AsuHPI GGTGA 2 cut(s) 223, 391
BaeGI GKGCMC 1 cut(s) 342
BalI TGGCCA 1 cut(s) 140
BanII GRGCYC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 334, 431
BccI CCATC 1 cut(s) 370
BciT130I CCWGG 1 cut(s) 72
BisI GCNGC 2 cut(s) 348, 420
BlsI GCNGC 2 cut(s) 349, 421
Bme1390I CCNGG 1 cut(s) 72
BmgT120I GGNCC 2 cut(s) 11, 242
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 252
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 2 cut(s) 334, 431
BshFI GGCC 3 cut(s) 13, 140, 244
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 240
BsnI GGCC 3 cut(s) 13, 140, 244
Bsp1286I GDGCHC 2 cut(s) 315, 342
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 1 cut(s) 75
BspANI GGCC 3 cut(s) 13, 140, 244
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 1 cut(s) 24
BsrI ACTGG 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 6, 417
BstDSI CCRYGG 1 cut(s) 234
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 10, 428
BstNI CCWGG 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 70
BstSLI GKGCMC 1 cut(s) 342
BstV1I GCAGC 2 cut(s) 334, 431
BsuRI GGCC 3 cut(s) 13, 140, 244
BtgI CCRYGG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 245
Cac8I GCNNGC 2 cut(s) 6, 417
CciI TCATGA 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 11, 242
CviAII CATG 6 cut(s) 5, 20, 82, 136, 180, 343
CviJI RGCY 9 cut(s) 13, 25, 62, 140, 165, 244, 313, 347, 422
CviKI_1 RGCY 9 cut(s) 13, 25, 62, 140, 165, 244, 313, 347, 422
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 138
EciI GGCGGA 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 70
EcoT22I ATGCAT 2 cut(s) 6, 181
EcoT38I GRGCYC 1 cut(s) 315
FaeI CATG 6 cut(s) 8, 23, 85, 139, 183, 346
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FatI CATG 6 cut(s) 4, 19, 81, 135, 179, 342
FauNDI CATATG 1 cut(s) 104
FblI GTMKAC 1 cut(s) 148
Fnu4HI GCNGC 2 cut(s) 348, 420
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 2 cut(s) 348, 420
GluI GCNGC 2 cut(s) 348, 420
HaeIII GGCC 3 cut(s) 13, 140, 244
HapII CCGG 1 cut(s) 14
Hin1II CATG 6 cut(s) 8, 23, 85, 139, 183, 346
HincII GTYRAC 2 cut(s) 149, 271
HindII GTYRAC 2 cut(s) 149, 271
HinfI GANTC 2 cut(s) 34, 78
HpaII CCGG 1 cut(s) 14
HphI GGTGA 2 cut(s) 223, 391
Hpy166II GTNNAC 3 cut(s) 149, 271, 340
Hpy188I TCNGA 2 cut(s) 68, 260
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 3 cut(s) 149, 271, 340
HpyAV CCTTC 2 cut(s) 49, 370
HpyCH4V TGCA 8 cut(s) 4, 8, 179, 197, 305, 340, 350, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 428
Hsp92II CATG 6 cut(s) 8, 23, 85, 139, 183, 346
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 7 cut(s) 27, 57, 84, 207, 233, 279, 329
Lsp1109I GCAGC 2 cut(s) 334, 431
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MfeI CAATTG 1 cut(s) 186
MhlI GDGCHC 2 cut(s) 315, 342
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 2 cut(s) 186, 320
MluNI TGGCCA 1 cut(s) 140
MlyI GAGTC 2 cut(s) 28, 87
MmeI TCCRAC 2 cut(s) 91, 388
MnlI CCTC 4 cut(s) 74, 232, 328, 421
Mox20I TGGCCA 1 cut(s) 140
Mph1103I ATGCAT 2 cut(s) 6, 181
MscI TGGCCA 1 cut(s) 140
MslI CAYNNNNRTG 1 cut(s) 335
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 72
MunI CAATTG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 10, 428
NdeI CATATG 1 cut(s) 104
NdeII GATC 1 cut(s) 16
NlaIII CATG 6 cut(s) 8, 23, 85, 139, 183, 346
NlaIV GGNNCC 1 cut(s) 243
NsiI ATGCAT 2 cut(s) 6, 181
NspI RCATGY 1 cut(s) 8
OliI CACNNNNGTG 1 cut(s) 335
PaeI GCATGC 1 cut(s) 8
PagI TCATGA 1 cut(s) 19
PkrI GCNGC 2 cut(s) 349, 421
PleI GAGTC 2 cut(s) 28, 86
PpsI GAGTC 2 cut(s) 28, 86
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 2 cut(s) 11, 242
PvuII CAGCTG 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 335
SalI GTCGAC 1 cut(s) 147
SatI GCNGC 2 cut(s) 348, 420
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 2 cut(s) 11, 242
SchI GAGTC 2 cut(s) 28, 87
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 2 cut(s) 315, 342
SetI ASST 5 cut(s) 27, 73, 339, 381, 424
SmiMI CAYNNNNRTG 1 cut(s) 335
SphI GCATGC 1 cut(s) 8
Sse9I AATT 2 cut(s) 186, 320
SsiI CCGC 1 cut(s) 75
SspI AATATT 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 70
TaqI TCGA 1 cut(s) 148
TasI AATT 2 cut(s) 186, 320
TscAI CASTG 1 cut(s) 252
TseI GCWGC 2 cut(s) 347, 419
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 1 cut(s) 252
VneI GTGCAC 1 cut(s) 338
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 148
Zsp2I ATGCAT 2 cut(s) 6, 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.