Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001202

Physical Location & Seq

Genomic Coordinates Reverse (-)

986966 .. 990324

Gene Structure 3359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0012500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCAGGGATGGCATCTCTTCCACATGGAAATACTGCAAATTGTAGCTTACTATGTGAAAGGGGACCTGTTTCGTTTATGGGTATCTCGGCTCTTCCATTGACACAACTGAGGGTCAGAGCTTTTGATGGTTTGGTGAGAGGTAGAGCTATAACTCACAGCTTATGTAGAAACGAGACATCCCCTTTCTGGGGTAAAGGTTCCGACAGAATCCACAACATGATGTCAAAAAAGGTGGTCATTAATATCCCCAGAAATAGCAATTCTTCGAATTCTAATGGGGAAGAAGACAACTCCCCTGATAAGGCCAAGCAGCAAAAGTCTTTTGGATACTCGAGGAAGGATGTTATATTGATCGGAGTTGGAGTAACTGTTCTAGGTGTTGGCTTGAAAAGTGGATTAGAGTTTGTTGGAGTCGATCCTTTACAAGCAGGGAATGTCGTTCAACTGGTATTGGTGTTGGGCCTTACAATCGGATGGATTTCTACTTATATTTTTCGAGTTTCAAATAAGGAAATGACATATGCACAGCAATTACGTGACTATGAAAGCGCAGTCATGGAGAAGAGATTAGAAGGCCTAACTGAAGCAGAACTAGAAGCGTTGCTTGAACAAGTTGATGAAGAGAAGAGGCGCCTTGGCGAGAAAGTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0033554 GO:0034637 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0050896 GO:0051716 GO:0070413 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

218

Amino Acids

23.91

Weight (kDa)

8.43

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3007	PF11460	112 - 207	2.6e-34	Protein of unknown function (DUF3007)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23870 AT1G60140 AT1G60140 AT1G60140 AT1G60140 AT1G60140 AT1G60140 AT1G70290 AT1G70290
fragaria_vesca	FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100
malus_domestica	MD00G1171800.v1.1 MD13G1089600.v1.1 MD14G1183700.v1.1 MD16G1089800.v1.1
prunus_persica	Prupe.1G256200_v2.0.a1 Prupe.5G176400_v2.0.a1
pyrus_communis	pycom06g15770 pycom13g07810 pycom14g15280 pycom16g07690
rosa_chinensis	RchiOBHm_Chr4g0444141 RchiOBHm_Chr7g0193901
rosa_laevigata	RLG00000004229 RLG00000004235 RLG00000005852
rosa_multiflora	Rmu_co8448227.1_g000001 Rmu_sc0012638.1_g000011
rosa_roxburghii	Rroxscaffold_3G00261720 Rroxscaffold_5G00384730
rosa_rugosa	Rorug04G0350400 Rorug07G0012500 Rorug07G0012600 Rorug07G0012700
rosa_samantha	Rh4AG411000 Rh4BG422400 Rh4CG436800 Rh4DG417700 Rh7BG140000 Rh7CG143700
rosa_wichuraiana	Rw4G035310 Rw7G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	633
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	606
AcyI	GRCGYC	1 cut(s)	634
AfiI	CCNNNNNNNGG	4 cut(s)	189, 190, 191, 304
AgsI	TTSAA	4 cut(s)	391, 446, 507, 611
AloI	GAACNNNNNNTCC	2 cut(s)	357, 389
AluBI	AGCT	4 cut(s)	48, 122, 149, 162
AluI	AGCT	4 cut(s)	48, 122, 149, 162
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	334
AoxI	GGCC	3 cut(s)	306, 463, 577
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	1 cut(s)	271
AseI	ATTAAT	1 cut(s)	243
AspLEI	GCGC	2 cut(s)	554, 636
AspS9I	GGNCC	2 cut(s)	65, 463
AsuHPI	GGTGA	1 cut(s)	148
AsuII	TTCGAA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	633
BbsI	GAAGAC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	3 cut(s)	4, 122, 471
BciVI	GTATCC	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	2 cut(s)	377, 596
BfoI	RGCGCY	1 cut(s)	637
BfuI	GTATCC	1 cut(s)	323
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
Bme18I	GGWCC	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	65, 463
BmiI	GGNNCC	3 cut(s)	66, 202, 635
BmsI	GCATC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	539
BsaHI	GRCGYC	1 cut(s)	634
BsaJI	CCNNGG	1 cut(s)	637
BsaXI	ACNNNNNCTCC	4 cut(s)	351, 357, 381, 387
Bsc4I	CCNNNNNNNGG	4 cut(s)	189, 190, 191, 304
Bse1I	ACTGG	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	637
BseGI	GGATG	4 cut(s)	15, 179, 349, 482
BseLI	CCNNNNNNNGG	4 cut(s)	189, 190, 191, 304
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	453
BseXI	GCAGC	1 cut(s)	325
BshFI	GGCC	3 cut(s)	308, 465, 579
BshNI	GGYRCC	1 cut(s)	633
BsiHKCI	CYCGRG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	4 cut(s)	189, 190, 191, 304
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	3 cut(s)	308, 465, 579
BsoBI	CYCGRG	1 cut(s)	334
Bsp119I	TTCGAA	1 cut(s)	269
Bsp143I	GATC	2 cut(s)	354, 418
BspANI	GGCC	3 cut(s)	308, 465, 579
BspCNI	CTCAG	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	66, 202, 635
BspPI	GGATC	1 cut(s)	413
BspQI	GCTCTTC	1 cut(s)	99
BspT104I	TTCGAA	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	633
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	637
BssMI	GATC	2 cut(s)	354, 418
BssNI	GRCGYC	1 cut(s)	634
BssT1I	CCWWGG	1 cut(s)	637
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	5 cut(s)	24, 99, 560, 618, 623
BstACI	GRCGYC	1 cut(s)	634
BstBAI	YACGTR	1 cut(s)	539
BstBI	TTCGAA	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	4 cut(s)	15, 179, 349, 482
BstH2I	RGCGCY	1 cut(s)	637
BstHHI	GCGC	2 cut(s)	554, 636
BstKTI	GATC	2 cut(s)	357, 421
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	2 cut(s)	354, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	323
BsuRI	GGCC	3 cut(s)	308, 465, 579
BtsCI	GGATG	4 cut(s)	15, 179, 349, 482
CfoI	GCGC	2 cut(s)	554, 636
Cfr13I	GGNCC	2 cut(s)	65, 463
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviAII	CATG	3 cut(s)	26, 220, 559
CviJI	RGCY	9 cut(s)	48, 92, 122, 149, 162, 308, 387, 465, 579
CviKI_1	RGCY	9 cut(s)	48, 92, 122, 149, 162, 308, 387, 465, 579
DdeI	CTNAG	1 cut(s)	110
DinI	GGCGCC	1 cut(s)	635
DpnI	GATC	2 cut(s)	356, 420
DpnII	GATC	2 cut(s)	354, 418
Eam1104I	CTCTTC	5 cut(s)	24, 99, 560, 618, 623
EarI	CTCTTC	5 cut(s)	24, 99, 560, 618, 623
Eco130I	CCWWGG	1 cut(s)	637
Eco147I	AGGCCT	1 cut(s)	579
Eco47I	GGWCC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	606
Eco88I	CYCGRG	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	637
EgeI	GGCGCC	1 cut(s)	635
EheI	GGCGCC	1 cut(s)	635
ErhI	CCWWGG	1 cut(s)	637
FaeI	CATG	3 cut(s)	29, 223, 562
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	3 cut(s)	25, 219, 558
FauNDI	CATATG	1 cut(s)	523
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	4 cut(s)	22, 166, 356, 489
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	2 cut(s)	377, 596
GlaI	GCGC	2 cut(s)	553, 635
GluI	GCNGC	1 cut(s)	314
HaeII	RGCGCY	1 cut(s)	637
HaeIII	GGCC	3 cut(s)	308, 465, 579
HhaI	GCGC	2 cut(s)	554, 636
Hin1I	GRCGYC	1 cut(s)	634
Hin1II	CATG	3 cut(s)	29, 223, 562
Hin6I	GCGC	2 cut(s)	552, 634
HinP1I	GCGC	2 cut(s)	552, 634
HinfI	GANTC	2 cut(s)	210, 414
HphI	GGTGA	1 cut(s)	148
Hpy188I	TCNGA	4 cut(s)	119, 205, 359, 476
HpyAV	CCTTC	2 cut(s)	334, 569
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	2 cut(s)	38, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	538
Hsp92I	GRCGYC	1 cut(s)	634
Hsp92II	CATG	3 cut(s)	29, 223, 562
HspAI	GCGC	2 cut(s)	552, 634
KasI	GGCGCC	1 cut(s)	633
Kzo9I	GATC	2 cut(s)	354, 418
LguI	GCTCTTC	1 cut(s)	99
LpnPI	CCDG	6 cut(s)	81, 175, 265, 312, 417, 434
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	2 cut(s)	377, 596
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	2 cut(s)	367, 539
MalI	GATC	2 cut(s)	356, 420
MboI	GATC	2 cut(s)	354, 418
MboII	GAAGA	8 cut(s)	11, 86, 258, 296, 299, 577, 635, 640
MluCI	AATT	5 cut(s)	40, 262, 271, 533, 652
Mly113I	GGCGCC	1 cut(s)	634
MlyI	GAGTC	1 cut(s)	423
MmeI	TCCRAC	3 cut(s)	228, 343, 391
MnlI	CCTC	4 cut(s)	105, 134, 330, 624
MseI	TTAA	2 cut(s)	243, 655
MwoI	GCNNNNNNNGC	1 cut(s)	11
NarI	GGCGCC	1 cut(s)	634
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	2 cut(s)	354, 418
NlaIII	CATG	3 cut(s)	29, 223, 562
NlaIV	GGNNCC	3 cut(s)	66, 202, 635
NmeAIII	GCCGAG	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	539
NspV	TTCGAA	1 cut(s)	269
PaeR7I	CTCGAG	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	579
PciSI	GCTCTTC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	210
PkrI	GCNGC	1 cut(s)	315
PleI	GAGTC	1 cut(s)	422
PluTI	GGCGCC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	422
Ppu21I	YACGTR	1 cut(s)	539
PpuMI	RGGWCCY	1 cut(s)	65
PshBI	ATTAAT	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	65
PspN4I	GGNNCC	3 cut(s)	66, 202, 635
PspPI	GGNCC	2 cut(s)	65, 463
PspPPI	RGGWCCY	1 cut(s)	65
PspXI	VCTCGAGB	1 cut(s)	334
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	243, 655
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	2 cut(s)	354, 418
Sau96I	GGNCC	2 cut(s)	65, 463
SchI	GAGTC	1 cut(s)	423
SfaNI	GCATC	1 cut(s)	23
SfoI	GGCGCC	1 cut(s)	635
Sfr274I	CTCGAG	1 cut(s)	334
SfuI	TTCGAA	1 cut(s)	269
SinI	GGWCC	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	5 cut(s)	40, 262, 271, 533, 652
SseBI	AGGCCT	1 cut(s)	579
SspDI	GGCGCC	1 cut(s)	633
SspMI	CTAG	2 cut(s)	377, 596
StuI	AGGCCT	1 cut(s)	579
StyI	CCWWGG	1 cut(s)	637
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	4 cut(s)	269, 335, 417, 499
TasI	AATT	5 cut(s)	40, 262, 271, 533, 652
TfiI	GAWTC	1 cut(s)	210
Tru1I	TTAA	2 cut(s)	243, 655
Tru9I	TTAA	2 cut(s)	243, 655
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	2 cut(s)	561, 636
VpaK11BI	GGWCC	1 cut(s)	65
VspI	ATTAAT	1 cut(s)	243
XapI	RAATTY	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	334
XspI	CTAG	2 cut(s)	377, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.