Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001202

Physical Location & Seq

Genomic Coordinates Forward (+)

52221836 .. 52225259

Gene Structure 3424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0350400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTTGTCATTGTTGCTGGTAGCTGCACTGAACCATCAAGGGGAAAATAACTCTAAGAACCGTAAGACCCAATCATATGTGATTGTAACCCAAGCCCATGCAAAAGCCCAATATCATGCCCAATACATCAGAAGTATAACTGGAAACCTAAAACACAAAACGCGCCTCTTCCTCTTCCTCTTCCTCTTCCAAAAACCCCAGCTCTCTGTACTCTCTTTTCTTCAGAGCGAGATGGGGGCGAAGGCGAAAAAGGCCATGAAAAAGCAGCTGAGCAAAGCTGTTTCTGCTTCTGCTTCTGCTCAAAAACCAGTTGCTAGTTCCGCTACTGCTGCTCCTGATTTCTTGCCATTAGAAGGCGGTGCTGCGCGTAAGCTCCCGGAAGAGAAGCCTAAGGAAGATGTTGCCAGGGTTGTATACATCAGTCGGATACCGCACGGCTTCTATGAAAAAGAAATGCAAGGTTTCTTTGGGCAGTTTGGTGTAATTAAGAGATTAAGAATTGTACGCAACAGAAAGACAGGAAAGTCCAAGCATTTTGGCTTCATCGAGTTTGAGGACCCTGGGGTTGCGAAAATTGTAGCTGAAACTATGGATAATTATTTGTTGTTTGAACACCTTTTGCAAACCCGTCTTATTCCTCCAGAGAAAGTTCACCCGAAGTTGTGGAAAGGTTGCAACGTTCGAGCCAAACCCTTGAACTGGGTTCAAATTGAGCGCAAGAGGCATGATAAGGAAAGAACATCGGAAGAGCACAAAAAGCTGGTGGAGAAAATTAAGAAGAGAGATCTGAAGCGTCAAAAGAGAATTGAGGCTGCTGGTATTGAGTACGAGTGCCCAGACATTGTCACTAATGATCAGCCTGCTCCAAAGAAGAAGAAGTTGCGCCTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0033554 GO:0034637 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0050896 GO:0051716 GO:0070413 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

297

Amino Acids

34.02

Weight (kDa)

10.13

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	138 - 205	1.1e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23870 AT1G60140 AT1G60140 AT1G60140 AT1G60140 AT1G60140 AT1G60140 AT1G70290 AT1G70290
fragaria_vesca	FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100
malus_domestica	MD00G1171800.v1.1 MD13G1089600.v1.1 MD14G1183700.v1.1 MD16G1089800.v1.1
prunus_persica	Prupe.1G256200_v2.0.a1 Prupe.5G176400_v2.0.a1
pyrus_communis	pycom06g15770 pycom13g07810 pycom14g15280 pycom16g07690
rosa_chinensis	RchiOBHm_Chr4g0444141 RchiOBHm_Chr7g0193901
rosa_laevigata	RLG00000004229 RLG00000004235 RLG00000005852
rosa_multiflora	Rmu_co8448227.1_g000001 Rmu_sc0012638.1_g000011
rosa_roxburghii	Rroxscaffold_3G00261720 Rroxscaffold_5G00384730
rosa_rugosa	Rorug04G0350400 Rorug07G0012500 Rorug07G0012600 Rorug07G0012700
rosa_samantha	Rh4AG411000 Rh4BG422400 Rh4CG436800 Rh4DG417700 Rh7BG140000 Rh7CG143700
rosa_wichuraiana	Rw4G035310 Rw7G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	523
AccI	GTMKAC	1 cut(s)	414
AccII	CGCG	2 cut(s)	163, 367
AciI	CCGC	3 cut(s)	321, 357, 431
AclI	AACGTT	1 cut(s)	678
AcuI	CTGAAG	2 cut(s)	206, 809
AfaI	GTAC	3 cut(s)	210, 504, 827
AfiI	CCNNNNNNNGG	3 cut(s)	40, 353, 699
AgsI	TTSAA	3 cut(s)	611, 697, 707
AjnI	CCWGG	2 cut(s)	404, 559
AluBI	AGCT	7 cut(s)	23, 202, 268, 278, 373, 581, 760
AluI	AGCT	7 cut(s)	23, 202, 268, 278, 373, 581, 760
Alw21I	GWGCWC	1 cut(s)	753
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	5 cut(s)	23, 265, 329, 362, 812
AspLEI	GCGC	4 cut(s)	165, 367, 717, 885
AspS9I	GGNCC	1 cut(s)	556
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	1 cut(s)	644
AvaII	GGWCC	1 cut(s)	556
AxyI	CCTNAGG	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	836
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	5 cut(s)	10, 277, 316, 349, 799
BccI	CCATC	2 cut(s)	42, 226
BceAI	ACGGC	1 cut(s)	451
BciT130I	CCWGG	2 cut(s)	406, 561
BciVI	GTATCC	1 cut(s)	420
BclI	TGATCA	1 cut(s)	853
BcnI	CCSGG	1 cut(s)	377
BfaI	CTAG	1 cut(s)	315
BfuI	GTATCC	1 cut(s)	420
BglII	AGATCT	1 cut(s)	784
BisI	GCNGC	5 cut(s)	24, 266, 330, 363, 813
BlpI	GCTNAGC	1 cut(s)	269
BlsI	GCNGC	5 cut(s)	25, 267, 331, 364, 814
Bme1390I	CCNGG	3 cut(s)	377, 406, 561
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	3 cut(s)	377, 406, 561
BmrI	ACTGGG	1 cut(s)	709
BmuI	ACTGGG	1 cut(s)	709
BpmI	CTGGAG	1 cut(s)	624
Bpu1102I	GCTNAGC	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	377
BsaJI	CCNNGG	3 cut(s)	405, 559, 560
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 353, 699
Bse1I	ACTGG	3 cut(s)	145, 308, 704
Bse21I	CCTNAGG	1 cut(s)	390
BseBI	CCWGG	2 cut(s)	406, 561
BseDI	CCNNGG	3 cut(s)	405, 559, 560
BseLI	CCNNNNNNNGG	3 cut(s)	40, 353, 699
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	3 cut(s)	145, 308, 704
BseSI	GKGCMC	1 cut(s)	836
BseXI	GCAGC	5 cut(s)	10, 277, 316, 349, 799
BseYI	CCCAGC	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	9
Bsh1236I	CGCG	2 cut(s)	163, 367
BshFI	GGCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	753
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	3 cut(s)	40, 353, 699
BsnI	GGCC	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	753, 836
Bsp143I	GATC	2 cut(s)	784, 853
Bsp1720I	GCTNAGC	1 cut(s)	269
BspACI	CCGC	3 cut(s)	321, 357, 431
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	261
BspFNI	CGCG	2 cut(s)	163, 367
BspLI	GGNNCC	1 cut(s)	558
BspQI	GCTCTTC	1 cut(s)	741
BsrI	ACTGG	3 cut(s)	145, 308, 704
BssECI	CCNNGG	3 cut(s)	405, 559, 560
BssMI	GATC	2 cut(s)	784, 853
BssNAI	GTATAC	1 cut(s)	415
Bst1107I	GTATAC	1 cut(s)	415
Bst2UI	CCWGG	2 cut(s)	406, 561
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	7 cut(s)	173, 179, 185, 191, 375, 741, 773
BstC8I	GCNNGC	1 cut(s)	861
BstDEI	CTNAG	3 cut(s)	54, 269, 390
BstFNI	CGCG	2 cut(s)	163, 367
BstHHI	GCGC	4 cut(s)	165, 367, 717, 885
BstKTI	GATC	2 cut(s)	787, 856
BstMBI	GATC	2 cut(s)	784, 853
BstMWI	GCNNNNNNNGC	6 cut(s)	251, 284, 320, 329, 721, 757
BstNI	CCWGG	2 cut(s)	406, 561
BstSCI	CCNGG	3 cut(s)	375, 404, 559
BstSLI	GKGCMC	1 cut(s)	836
BstUI	CGCG	2 cut(s)	163, 367
BstV1I	GCAGC	5 cut(s)	10, 277, 316, 349, 799
BstX2I	RGATCY	1 cut(s)	784
BstYI	RGATCY	1 cut(s)	784
BstZ17I	GTATAC	1 cut(s)	415
Bsu36I	CCTNAGG	1 cut(s)	390
BsuI	GTATCC	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	861
CfoI	GCGC	4 cut(s)	165, 367, 717, 885
Cfr13I	GGNCC	1 cut(s)	556
CseI	GACGC	1 cut(s)	782
Csp6I	GTAC	3 cut(s)	209, 503, 826
CviAII	CATG	4 cut(s)	98, 116, 256, 725
CviQI	GTAC	3 cut(s)	209, 503, 826
DdeI	CTNAG	3 cut(s)	54, 269, 390
DpnI	GATC	2 cut(s)	786, 855
DpnII	GATC	2 cut(s)	784, 853
DrdI	GACNNNNNNGTC	1 cut(s)	523
DseDI	GACNNNNNNGTC	1 cut(s)	523
Eam1104I	CTCTTC	7 cut(s)	173, 179, 185, 191, 375, 741, 773
EarI	CTCTTC	7 cut(s)	173, 179, 185, 191, 375, 741, 773
Eco47I	GGWCC	1 cut(s)	556
Eco57I	CTGAAG	2 cut(s)	206, 809
Eco81I	CCTNAGG	1 cut(s)	390
EcoO109I	RGGNCCY	1 cut(s)	556
EcoRII	CCWGG	2 cut(s)	404, 559
FaeI	CATG	4 cut(s)	101, 119, 259, 728
FatI	CATG	4 cut(s)	97, 115, 255, 724
FauNDI	CATATG	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	853
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	5 cut(s)	24, 266, 330, 363, 813
Fsp4HI	GCNGC	5 cut(s)	24, 266, 330, 363, 813
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	4 cut(s)	164, 366, 716, 884
GluI	GCNGC	5 cut(s)	24, 266, 330, 363, 813
GsaI	CCCAGC	1 cut(s)	202
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	377
HgaI	GACGC	1 cut(s)	782
HhaI	GCGC	4 cut(s)	165, 367, 717, 885
Hin1II	CATG	4 cut(s)	101, 119, 259, 728
Hin6I	GCGC	4 cut(s)	163, 365, 715, 883
HinP1I	GCGC	4 cut(s)	163, 365, 715, 883
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	1 cut(s)	644
Hpy166II	GTNNAC	2 cut(s)	415, 652
Hpy188I	TCNGA	5 cut(s)	131, 225, 426, 745, 789
Hpy188III	TCNNGA	2 cut(s)	335, 641
Hpy8I	GTNNAC	2 cut(s)	415, 652
HpyAV	CCTTC	2 cut(s)	235, 347
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	1 cut(s)	678
HpyCH4V	TGCA	5 cut(s)	26, 101, 457, 622, 675
HpyF10VI	GCNNNNNNNGC	6 cut(s)	251, 284, 320, 329, 721, 757
HpyF3I	CTNAG	3 cut(s)	54, 269, 390
HpySE526I	ACGT	1 cut(s)	678
Hsp92II	CATG	4 cut(s)	101, 119, 259, 728
HspAI	GCGC	4 cut(s)	163, 365, 715, 883
Ksp22I	TGATCA	1 cut(s)	853
Kzo9I	GATC	2 cut(s)	784, 853
LguI	GCTCTTC	1 cut(s)	741
LmnI	GCTCC	3 cut(s)	337, 378, 868
Lsp1109I	GCAGC	5 cut(s)	10, 277, 316, 349, 799
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	2 cut(s)	85, 844
MalI	GATC	2 cut(s)	786, 855
MboI	GATC	2 cut(s)	784, 853
MflI	RGATCY	1 cut(s)	784
MhlI	GDGCHC	2 cut(s)	753, 836
MluCI	AATT	7 cut(s)	483, 498, 573, 595, 708, 771, 804
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	8 cut(s)	176, 182, 188, 194, 547, 648, 714, 802
MseI	TTAA	3 cut(s)	486, 494, 774
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	3 cut(s)	377, 406, 561
MvaI	CCWGG	2 cut(s)	406, 561
MvnI	CGCG	2 cut(s)	163, 367
MwoI	GCNNNNNNNGC	6 cut(s)	251, 284, 320, 329, 721, 757
NciI	CCSGG	1 cut(s)	377
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	2 cut(s)	784, 853
NlaIII	CATG	4 cut(s)	101, 119, 259, 728
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	844
PasI	CCCWGGG	1 cut(s)	560
PciSI	GCTCTTC	1 cut(s)	741
PflFI	GACNNNGTC	1 cut(s)	842
PfoI	TCCNGGA	1 cut(s)	375
PkrI	GCNGC	5 cut(s)	25, 267, 331, 364, 814
PpuMI	RGGWCCY	1 cut(s)	556
Psp1406I	AACGTT	1 cut(s)	678
Psp5II	RGGWCCY	1 cut(s)	556
Psp6I	CCWGG	2 cut(s)	404, 559
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	2 cut(s)	404, 559
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	1 cut(s)	556
PspPPI	RGGWCCY	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	784
PsyI	GACNNNGTC	1 cut(s)	842
PvuII	CAGCTG	1 cut(s)	268
RsaI	GTAC	3 cut(s)	210, 504, 827
RsaNI	GTAC	3 cut(s)	209, 503, 826
SapI	GCTCTTC	1 cut(s)	741
SaqAI	TTAA	3 cut(s)	486, 494, 774
SatI	GCNGC	5 cut(s)	24, 266, 330, 363, 813
Sau3AI	GATC	2 cut(s)	784, 853
Sau96I	GGNCC	1 cut(s)	556
ScrFI	CCNGG	3 cut(s)	377, 406, 561
SduI	GDGCHC	2 cut(s)	753, 836
SinI	GGWCC	1 cut(s)	556
Sse9I	AATT	7 cut(s)	483, 498, 573, 595, 708, 771, 804
SsiI	CCGC	3 cut(s)	321, 357, 431
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	3 cut(s)	375, 404, 559
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	1 cut(s)	681
TaqI	TCGA	2 cut(s)	546, 682
TasI	AATT	7 cut(s)	483, 498, 573, 595, 708, 771, 804
TatI	WGTACW	1 cut(s)	208
Tru1I	TTAA	3 cut(s)	486, 494, 774
Tru9I	TTAA	3 cut(s)	486, 494, 774
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	844
TseI	GCWGC	5 cut(s)	23, 265, 329, 362, 812
Tsp45I	GTSAC	1 cut(s)	844
TspDTI	ATGAA	3 cut(s)	272, 459, 532
TspRI	CASTG	1 cut(s)	33
Tth111I	GACNNNGTC	1 cut(s)	842
VpaK11BI	GGWCC	1 cut(s)	556
XmiI	GTMKAC	1 cut(s)	414
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.