Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001202

Physical Location & Seq

Genomic Coordinates Reverse (-)

996277 .. 997365

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0012700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCTAGATCCAAGAAATGACCTGCTTCCTCCACCTTCATCTCCCACCAATTCCTCCGTCTCCTCCTCCGATCTCGACACTGAGTCTACGGGCTCATTTTTTCATGATCGGAGCACCACCTTGGGAACTTTAATGGGAGTGAGTTTCCCGGCGATAACGTTCCGAGCGCCGAGCCAGAGCCGCCGCGAGCTCCAGTCCGCCGGCAGCACCAGCGGCGGCGGCGGCTCGAGGAAGGCGAAGAAGCCGAAGAAGAAGAGCGCCGCGGCCGCGGTTGCCGGAGTGACTGAGCGGCGGCGGAGGTGGTGGAGGCTCTGCCGAGACGACGGCACTAAGCCGGCGTCTCTTGGAGAGTTTCTGGAGGTGGAGAGGCGGTTCGGCGATGGCGCGTTTTACAATACGGCGGCGGAGCTTGAAGGGGTGATGGTGGCGCAGCAGCCGAGAAATGGAGGGCAGATGTTGTTTGCTGATGGGAGAGTTCTGCCGCCGTCGAATGTGGACGACGGAGCTTCTTCGTCGACGGCCGGCGTTCTGTGTAGATTTCCGGTTGCTCTCACTGCCATCTGTAGTGGCGGTTTAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0033554 GO:0034637 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0050896 GO:0051716 GO:0070413 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

193

Amino Acids

20.33

Weight (kDa)

9.45

Isoelectric Point (pI)

64.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23870 AT1G60140 AT1G60140 AT1G60140 AT1G60140 AT1G60140 AT1G60140 AT1G70290 AT1G70290
fragaria_vesca	FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100
malus_domestica	MD00G1171800.v1.1 MD13G1089600.v1.1 MD14G1183700.v1.1 MD16G1089800.v1.1
prunus_persica	Prupe.1G256200_v2.0.a1 Prupe.5G176400_v2.0.a1
pyrus_communis	pycom06g15770 pycom13g07810 pycom14g15280 pycom16g07690
rosa_chinensis	RchiOBHm_Chr4g0444141 RchiOBHm_Chr7g0193901
rosa_laevigata	RLG00000004229 RLG00000004235 RLG00000005852
rosa_multiflora	Rmu_co8448227.1_g000001 Rmu_sc0012638.1_g000011
rosa_roxburghii	Rroxscaffold_3G00261720 Rroxscaffold_5G00384730
rosa_rugosa	Rorug04G0350400 Rorug07G0012500 Rorug07G0012600 Rorug07G0012700
rosa_samantha	Rh4AG411000 Rh4BG422400 Rh4CG436800 Rh4DG417700 Rh7BG140000 Rh7CG143700
rosa_wichuraiana	Rw4G035310 Rw7G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	30
AccBSI	CCGCTC	1 cut(s)	289
AccI	GTMKAC	2 cut(s)	86, 515
AccII	CGCG	4 cut(s)	186, 263, 269, 386
AclI	AACGTT	1 cut(s)	158
AclWI	GGATC	1 cut(s)	2
AcoI	YGGCCR	2 cut(s)	264, 519
AcyI	GRCGYC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	1 cut(s)	413
AhdI	GACNNNNNGTC	1 cut(s)	82
AloI	GAACNNNNNNTCC	2 cut(s)	356, 388
AluBI	AGCT	3 cut(s)	190, 409, 506
AluI	AGCT	3 cut(s)	190, 409, 506
Alw21I	GWGCWC	2 cut(s)	116, 192
Alw26I	GTCTC	3 cut(s)	64, 312, 345
AlwI	GGATC	1 cut(s)	2
Ama87I	CYCGRG	1 cut(s)	226
AoxI	GGCC	2 cut(s)	264, 519
ApeKI	GCWGC	3 cut(s)	204, 430, 433
AspLEI	GCGC	4 cut(s)	169, 260, 386, 430
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	226
BanII	GRGCYC	2 cut(s)	95, 192
Bbv12I	GWGCWC	2 cut(s)	116, 192
BbvI	GCAGC	3 cut(s)	216, 442, 445
BccI	CCATC	4 cut(s)	374, 415, 461, 566
BceAI	ACGGC	4 cut(s)	340, 414, 469, 534
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	3 cut(s)	64, 312, 345
BfaI	CTAG	1 cut(s)	5
BfmI	CTRYAG	1 cut(s)	562
BfoI	RGCGCY	2 cut(s)	170, 261
BfuAI	ACCTGC	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	149
BmeRI	GACNNNNNGTC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	149
BpmI	CTGGAG	2 cut(s)	176, 377
BpuMI	CCSGG	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	338
BsaJI	CCNNGG	3 cut(s)	120, 261, 267
BsaWI	WCCGGW	1 cut(s)	541
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse118I	RCCGGY	3 cut(s)	200, 334, 521
Bse1I	ACTGG	1 cut(s)	193
BseDI	CCNNGG	3 cut(s)	120, 261, 267
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	2 cut(s)	72, 276
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	2 cut(s)	52, 55
BseX3I	CGGCCG	2 cut(s)	264, 519
BseXI	GCAGC	3 cut(s)	216, 442, 445
Bsh1236I	CGCG	4 cut(s)	186, 263, 269, 386
Bsh1285I	CGRYCG	2 cut(s)	267, 522
BshFI	GGCC	2 cut(s)	266, 521
BsiEI	CGRYCG	2 cut(s)	267, 522
BsiHKAI	GWGCWC	2 cut(s)	116, 192
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	6 cut(s)	149, 201, 276, 335, 522, 542
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	3 cut(s)	64, 312, 345
BsmBI	CGTCTC	3 cut(s)	64, 312, 345
BsnI	GGCC	2 cut(s)	266, 521
BsoBI	CYCGRG	1 cut(s)	226
Bsp1286I	GDGCHC	3 cut(s)	95, 116, 192
Bsp143I	GATC	3 cut(s)	7, 70, 106
BspANI	GGCC	2 cut(s)	266, 521
BspCNI	CTCAG	2 cut(s)	73, 277
BspFNI	CGCG	4 cut(s)	186, 263, 269, 386
BspHI	TCATGA	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	2
BspQI	GCTCTTC	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	289
BsrFI	RCCGGY	3 cut(s)	200, 334, 521
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	3 cut(s)	200, 334, 521
BssECI	CCNNGG	3 cut(s)	120, 261, 267
BssMI	GATC	3 cut(s)	7, 70, 106
BssNI	GRCGYC	1 cut(s)	338
BssT1I	CCWWGG	1 cut(s)	120
Bst6I	CTCTTC	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	338
BstC8I	GCNNGC	4 cut(s)	188, 202, 336, 523
BstDEI	CTNAG	3 cut(s)	81, 285, 330
BstDSI	CCRYGG	2 cut(s)	261, 267
BstFNI	CGCG	4 cut(s)	186, 263, 269, 386
BstH2I	RGCGCY	2 cut(s)	170, 261
BstHHI	GCGC	4 cut(s)	169, 260, 386, 430
BstKTI	GATC	3 cut(s)	10, 73, 109
BstMAI	GTCTC	3 cut(s)	64, 312, 345
BstMBI	GATC	3 cut(s)	7, 70, 106
BstMCI	CGRYCG	2 cut(s)	267, 522
BstMWI	GCNNNNNNNGC	8 cut(s)	180, 210, 213, 219, 222, 266, 272, 554
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	562
BstUI	CGCG	4 cut(s)	186, 263, 269, 386
BstV1I	GCAGC	3 cut(s)	216, 442, 445
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BstZI	CGGCCG	2 cut(s)	264, 519
BsuRI	GGCC	2 cut(s)	266, 521
BtgI	CCRYGG	2 cut(s)	261, 267
BtgZI	GCGATG	1 cut(s)	393
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	2 cut(s)	78, 552
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	4 cut(s)	188, 202, 336, 523
CciI	TCATGA	1 cut(s)	103
CciNI	GCGGCCGC	1 cut(s)	264
CfoI	GCGC	4 cut(s)	169, 260, 386, 430
Cfr10I	RCCGGY	3 cut(s)	200, 334, 521
Cfr42I	CCGCGG	2 cut(s)	264, 270
CseI	GACGC	1 cut(s)	327
CviAII	CATG	1 cut(s)	104
DdeI	CTNAG	3 cut(s)	81, 285, 330
DpnI	GATC	3 cut(s)	9, 72, 108
DpnII	GATC	3 cut(s)	7, 70, 106
DriI	GACNNNNNGTC	1 cut(s)	82
EaeI	YGGCCR	2 cut(s)	264, 519
EagI	CGGCCG	2 cut(s)	264, 519
Eam1104I	CTCTTC	1 cut(s)	248
Eam1105I	GACNNNNNGTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	248
EciI	GGCGGA	3 cut(s)	187, 310, 419
Ecl136II	GAGCTC	1 cut(s)	190
EclXI	CGGCCG	2 cut(s)	264, 519
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	2 cut(s)	95, 192
Eco52I	CGGCCG	2 cut(s)	264, 519
Eco53kI	GAGCTC	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	2 cut(s)	95, 192
ErhI	CCWWGG	1 cut(s)	120
Esp3I	CGTCTC	3 cut(s)	64, 312, 345
FaeI	CATG	1 cut(s)	107
FaiI	YATR	1 cut(s)	105
FatI	CATG	1 cut(s)	103
FblI	GTMKAC	2 cut(s)	86, 515
FriOI	GRGCYC	2 cut(s)	95, 192
FspBI	CTAG	1 cut(s)	5
GlaI	GCGC	4 cut(s)	168, 259, 385, 429
GsuI	CTGGAG	2 cut(s)	176, 377
HaeII	RGCGCY	2 cut(s)	170, 261
HaeIII	GGCC	2 cut(s)	266, 521
HapII	CCGG	6 cut(s)	149, 201, 276, 335, 522, 542
HgaI	GACGC	1 cut(s)	327
HhaI	GCGC	4 cut(s)	169, 260, 386, 430
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	4 cut(s)	167, 258, 384, 428
HinP1I	GCGC	4 cut(s)	167, 258, 384, 428
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	6 cut(s)	149, 201, 276, 335, 522, 542
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	3 cut(s)	87, 496, 516
Hpy188I	TCNGA	3 cut(s)	70, 111, 164
Hpy188III	TCNNGA	3 cut(s)	74, 104, 356
Hpy8I	GTNNAC	3 cut(s)	87, 496, 516
Hpy99I	CGWCG	5 cut(s)	326, 490, 503, 517, 520
HpyAV	CCTTC	3 cut(s)	45, 226, 407
HpyCH4IV	ACGT	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	8 cut(s)	180, 210, 213, 219, 222, 266, 272, 554
HpyF3I	CTNAG	3 cut(s)	81, 285, 330
HpySE526I	ACGT	1 cut(s)	158
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	4 cut(s)	167, 258, 384, 428
KroI	GCCGGC	3 cut(s)	200, 334, 521
KroNI	GCCGGC	3 cut(s)	202, 336, 523
KspI	CCGCGG	2 cut(s)	264, 270
Kzo9I	GATC	3 cut(s)	7, 70, 106
LguI	GCTCTTC	1 cut(s)	248
LmnI	GCTCC	4 cut(s)	111, 195, 406, 503
Lsp1109I	GCAGC	3 cut(s)	216, 442, 445
MaeI	CTAG	1 cut(s)	5
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	3 cut(s)	9, 72, 108
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	3 cut(s)	7, 70, 106
MboII	GAAGA	5 cut(s)	250, 259, 262, 265, 501
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	3 cut(s)	95, 116, 192
MluCI	AATT	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	92
MroNI	GCCGGC	3 cut(s)	200, 334, 521
MseI	TTAA	1 cut(s)	131
MspA1I	CMGCKG	3 cut(s)	213, 263, 269
MspI	CCGG	6 cut(s)	149, 201, 276, 335, 522, 542
MspR9I	CCNGG	1 cut(s)	149
MvnI	CGCG	4 cut(s)	186, 263, 269, 386
MwoI	GCNNNNNNNGC	8 cut(s)	180, 210, 213, 219, 222, 266, 272, 554
NaeI	GCCGGC	3 cut(s)	202, 336, 523
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	3 cut(s)	7, 70, 106
NgoMIV	GCCGGC	3 cut(s)	200, 334, 521
NlaIII	CATG	1 cut(s)	107
NmeAIII	GCCGAG	3 cut(s)	195, 341, 462
NmuCI	GTSAC	1 cut(s)	280
NotI	GCGGCCGC	1 cut(s)	264
PaeR7I	CTCGAG	1 cut(s)	226
PagI	TCATGA	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	233
PdiI	GCCGGC	3 cut(s)	202, 336, 523
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
Psp124BI	GAGCTC	1 cut(s)	192
Psp1406I	AACGTT	1 cut(s)	158
PspXI	VCTCGAGB	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	192
SacII	CCGCGG	2 cut(s)	264, 270
SalI	GTCGAC	1 cut(s)	514
SapI	GCTCTTC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	131
Sau3AI	GATC	3 cut(s)	7, 70, 106
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	3 cut(s)	95, 116, 192
SetI	ASST	9 cut(s)	24, 37, 122, 161, 192, 302, 363, 411, 508
SfcI	CTRYAG	1 cut(s)	562
Sfr274I	CTCGAG	1 cut(s)	226
Sfr303I	CCGCGG	2 cut(s)	264, 270
SgrBI	CCGCGG	2 cut(s)	264, 270
SgrDI	CGTCGACG	1 cut(s)	514
SlaI	CTCGAG	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	1 cut(s)	49
SspMI	CTAG	1 cut(s)	5
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	120
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	4 cut(s)	75, 227, 488, 515
TasI	AATT	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TscAI	CASTG	2 cut(s)	85, 559
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	204, 430, 433
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	27, 92
TspGWI	ACGGA	2 cut(s)	46, 516
TspRI	CASTG	2 cut(s)	85, 559
XhoI	CTCGAG	1 cut(s)	226
XmiI	GTMKAC	2 cut(s)	86, 515
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.