Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001202

Physical Location & Seq

Genomic Coordinates Forward (+)

994443 .. 995286

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0012600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGAAATGCAGCAGCTTCTTGTGCTCCTTCAATACTCTCGAACAGTACAACAGTCAAGGTCCTATTCTTCGATGGAAGATTGGAAGTCTACATCAGACCAATCAAAGCAGCAGAGCTAATGCTAGAGCATTCAGGCCAGTTTGTGGTTGAGTCTAGCAGCCTCAGAGTAGGGAACAGAATCCATGGCCTTACAGCCGATGAAGAACTCGAAAGACGAAGATTCTACTTCCTTCTTCCCATGGATCTGCTCTACTCAGTTCTCACTCATGAAGAACTCAGCTCCCTAACTTACAAGGCTTCAAGGGCACTCAAGCACAGAGGAAGCTTCAACAACTTCAGCAAGATTTTTCCGGTCCTCAGCGAGTTTTGTATGTTTCCCAACTCAGAATCAAAGACATTGGATGGTTCTGATCATCACAGTCCTGTAAGCAATTCGTTAGTGCCATTGTTGGAGAGGAGGTACTCAAAGCAAAGATCATGGAAGCCTGCATTGGAGACCATTGTTGAAACCAGTACTACATGTCCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0033554 GO:0034637 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0050896 GO:0051716 GO:0070413 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

177

Amino Acids

19.97

Weight (kDa)

7.79

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PADRE	PF14009	1 - 170	1.5e-37	PADRE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23870 AT1G60140 AT1G60140 AT1G60140 AT1G60140 AT1G60140 AT1G60140 AT1G70290 AT1G70290
fragaria_vesca	FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100
malus_domestica	MD00G1171800.v1.1 MD13G1089600.v1.1 MD14G1183700.v1.1 MD16G1089800.v1.1
prunus_persica	Prupe.1G256200_v2.0.a1 Prupe.5G176400_v2.0.a1
pyrus_communis	pycom06g15770 pycom13g07810 pycom14g15280 pycom16g07690
rosa_chinensis	RchiOBHm_Chr4g0444141 RchiOBHm_Chr7g0193901
rosa_laevigata	RLG00000004229 RLG00000004235 RLG00000005852
rosa_multiflora	Rmu_co8448227.1_g000001 Rmu_sc0012638.1_g000011
rosa_roxburghii	Rroxscaffold_3G00261720 Rroxscaffold_5G00384730
rosa_rugosa	Rorug04G0350400 Rorug07G0012500 Rorug07G0012600 Rorug07G0012700
rosa_samantha	Rh4AG411000 Rh4BG422400 Rh4CG436800 Rh4DG417700 Rh7BG140000 Rh7CG143700
rosa_wichuraiana	Rw4G035310 Rw7G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	90
AclWI	GGATC	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	322
AfaI	GTAC	3 cut(s)	49, 464, 517
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflIII	ACRYGT	1 cut(s)	521
AgsI	TTSAA	4 cut(s)	33, 303, 331, 509
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AluBI	AGCT	4 cut(s)	17, 118, 282, 327
AluI	AGCT	4 cut(s)	17, 118, 282, 327
Alw21I	GWGCWC	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	1 cut(s)	252
AoxI	GGCC	2 cut(s)	136, 187
ApeKI	GCWGC	4 cut(s)	11, 14, 110, 159
AspS9I	GGNCC	2 cut(s)	61, 355
AvaII	GGWCC	2 cut(s)	61, 355
BaeGI	GKGCMC	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	28
BbvCI	CCTCAGC	1 cut(s)	359
BbvI	GCAGC	4 cut(s)	23, 26, 122, 171
BccI	CCATC	2 cut(s)	68, 398
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	2 cut(s)	125, 156
BisI	GCNGC	4 cut(s)	12, 15, 111, 160
BlsI	GCNGC	4 cut(s)	13, 16, 112, 161
BmcAI	AGTACT	1 cut(s)	517
Bme18I	GGWCC	2 cut(s)	61, 355
BmgT120I	GGNCC	2 cut(s)	61, 355
Bpu10I	CCTNAGC	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	184, 240
BsaWI	WCCGGW	1 cut(s)	352
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	2 cut(s)	139, 513
BseDI	CCNNGG	2 cut(s)	184, 240
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	5 cut(s)	178, 270, 292, 373, 399
BseNI	ACTGG	2 cut(s)	139, 513
BseRI	GAGGAG	1 cut(s)	472
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	4 cut(s)	23, 26, 122, 171
BshFI	GGCC	2 cut(s)	138, 189
BsiHKAI	GWGCWC	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	491
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	2 cut(s)	138, 189
Bso31I	GGTCTC	1 cut(s)	491
Bsp1286I	GDGCHC	2 cut(s)	28, 310
Bsp143I	GATC	3 cut(s)	244, 412, 476
Bsp19I	CCATGG	2 cut(s)	184, 240
BspANI	GGCC	2 cut(s)	138, 189
BspCNI	CTCAG	5 cut(s)	177, 269, 291, 372, 398
BspHI	TCATGA	1 cut(s)	268
BspPI	GGATC	1 cut(s)	252
BspTNI	GGTCTC	1 cut(s)	491
BsrI	ACTGG	2 cut(s)	139, 513
BssECI	CCNNGG	2 cut(s)	184, 240
BssMI	GATC	3 cut(s)	244, 412, 476
BssT1I	CCWWGG	2 cut(s)	184, 240
Bst4CI	ACNGT	3 cut(s)	47, 55, 422
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	5 cut(s)	164, 256, 278, 359, 385
BstDSI	CCRYGG	2 cut(s)	184, 240
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	3 cut(s)	247, 415, 479
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	3 cut(s)	244, 412, 476
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 305
BstNSI	RCATGY	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	310
BstV1I	GCAGC	4 cut(s)	23, 26, 122, 171
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	138, 189
BtgI	CCRYGG	2 cut(s)	184, 240
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	489
CciI	TCATGA	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	61, 355
Csp6I	GTAC	3 cut(s)	48, 463, 516
CviAII	CATG	5 cut(s)	185, 241, 269, 480, 522
CviQI	GTAC	3 cut(s)	48, 463, 516
DdeI	CTNAG	5 cut(s)	164, 256, 278, 359, 385
DpnI	GATC	3 cut(s)	246, 414, 478
DpnII	GATC	3 cut(s)	244, 412, 476
Eco130I	CCWWGG	2 cut(s)	184, 240
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	2 cut(s)	61, 355
Eco57I	CTGAAG	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	61
EcoT14I	CCWWGG	2 cut(s)	184, 240
ErhI	CCWWGG	2 cut(s)	184, 240
FaeI	CATG	5 cut(s)	188, 244, 272, 483, 525
FaiI	YATR	6 cut(s)	186, 242, 270, 374, 481, 523
FatI	CATG	5 cut(s)	184, 240, 268, 479, 521
FbaI	TGATCA	1 cut(s)	412
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	4 cut(s)	12, 15, 111, 160
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	4 cut(s)	12, 15, 111, 160
FspBI	CTAG	2 cut(s)	125, 156
GluI	GCNGC	4 cut(s)	12, 15, 111, 160
HaeIII	GGCC	2 cut(s)	138, 189
HapII	CCGG	1 cut(s)	353
Hin1II	CATG	5 cut(s)	188, 244, 272, 483, 525
HindIII	AAGCTT	1 cut(s)	325
HinfI	GANTC	4 cut(s)	152, 180, 222, 389
HpaII	CCGG	1 cut(s)	353
Hpy166II	GTNNAC	2 cut(s)	91, 527
Hpy188I	TCNGA	4 cut(s)	98, 167, 388, 412
Hpy188III	TCNNGA	2 cut(s)	40, 269
Hpy8I	GTNNAC	2 cut(s)	91, 527
HpyAV	CCTTC	2 cut(s)	39, 242
HpyCH4III	ACNGT	3 cut(s)	47, 55, 422
HpyCH4V	TGCA	2 cut(s)	11, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 305
HpyF3I	CTNAG	5 cut(s)	164, 256, 278, 359, 385
Hsp92II	CATG	5 cut(s)	188, 244, 272, 483, 525
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	244, 412, 476
LmnI	GCTCC	2 cut(s)	31, 287
LpnPI	CCDG	6 cut(s)	120, 152, 366, 438, 501, 526
Lsp1109I	GCAGC	4 cut(s)	23, 26, 122, 171
MaeI	CTAG	2 cut(s)	125, 156
MalI	GATC	3 cut(s)	246, 414, 478
MboI	GATC	3 cut(s)	244, 412, 476
MboII	GAAGA	6 cut(s)	61, 90, 215, 227, 231, 284
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	28, 310
MluCI	AATT	1 cut(s)	433
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	5 cut(s)	173, 314, 368, 450, 453
MspI	CCGG	1 cut(s)	353
Mva1269I	GAATGC	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	23, 305
NcoI	CCATGG	2 cut(s)	184, 240
NdeII	GATC	3 cut(s)	244, 412, 476
NlaIII	CATG	5 cut(s)	188, 244, 272, 483, 525
NspI	RCATGY	1 cut(s)	525
PagI	TCATGA	1 cut(s)	268
PciI	ACATGT	1 cut(s)	521
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	180, 222, 389
PflMI	CCANNNNNTGG	1 cut(s)	145
PkrI	GCNGC	4 cut(s)	13, 16, 112, 161
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PpuMI	RGGWCCY	1 cut(s)	61
PscI	ACATGT	1 cut(s)	521
Psp5II	RGGWCCY	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	61, 355
PspPPI	RGGWCCY	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	3 cut(s)	49, 464, 517
RsaNI	GTAC	3 cut(s)	48, 463, 516
SatI	GCNGC	4 cut(s)	12, 15, 111, 160
Sau3AI	GATC	3 cut(s)	244, 412, 476
Sau96I	GGNCC	2 cut(s)	61, 355
ScaI	AGTACT	1 cut(s)	517
SchI	GAGTC	1 cut(s)	161
SduI	GDGCHC	2 cut(s)	28, 310
SetI	ASST	6 cut(s)	19, 63, 120, 284, 329, 464
SinI	GGWCC	2 cut(s)	61, 355
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	1 cut(s)	433
SspMI	CTAG	2 cut(s)	125, 156
StyI	CCWWGG	2 cut(s)	184, 240
TaaI	ACNGT	3 cut(s)	47, 55, 422
TaqI	TCGA	3 cut(s)	41, 72, 210
TasI	AATT	1 cut(s)	433
TatI	WGTACW	2 cut(s)	47, 515
TfiI	GAWTC	3 cut(s)	180, 222, 389
TseI	GCWGC	4 cut(s)	11, 14, 110, 159
TspDTI	ATGAA	2 cut(s)	216, 285
Van91I	CCANNNNNTGG	1 cut(s)	145
VpaK11BI	GGWCC	2 cut(s)	61, 355
XceI	RCATGY	1 cut(s)	525
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	125, 156
ZrmI	AGTACT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.