RLG00000004229

alpha,alpha-trehalose-phosphate synthase UDP-forming

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
57415968 .. 57418277
2310 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004229

Sequence Viewer

Length: 1359 bp
ATGTGCCTGGACCACAGCAATCGCTTTGACAGGCTACTGTGGCAGGCTTATGTTTCTGCTAACAAGGTATATGCCGATAAAGTCATGGAGGTGATTAATCCTGAAAATGATTATGTATCACCTTATGATTCTTCCCACTTTTTTGAGAAGGCTAGAATGCTTGGCCTTGATTATGAATCAAAGCGAGGTTACATTGGACTTGAATATTTTGGCCGCACAGTGGATCAGCCTAAAGTTATTGGCCATGGAACAACTCCTGCAGCAGCACCCAGAGTTGCGGGGCAAGGCTATGAACCAGTTGTTTTGATTGATCGCAACGTTCCTTTCCATGAGAAGACTGCCTATTACTCATTGGCTGAATGCTGCATTGTCAATGCTGGCACTCCAAATATGGATAAAGCTTTAGGAATTCCCTTGGATTCCCCTCATACAAGTACACTTGTTATTTCAGAGTTCATAGGTTGCTCACCGTCTTTGAGTGGAGCAATAAGGGTGAACCCCTGGAACATTGAAGCTGTGGCTGACGCACTAAATGTGGCGATCACAATGCCTGATTTAGAAAAGCAGCTGCGGCATGAGAAACATTACAGGTATGTGAGCTCTCATGATGTGGCTTATTGGGCGCGCAATGACGGAATTGGTTTTGGTCTGCAGTCTAGAATCTTGTCTCTTTCTCCAAGTTTGAGGAAGCTTTCCATTGACCATATCCTCTCTGCATATAAAAGGACAAATCGAAGGGCAATCTTCTTGGATTATGATGGAACAATAATGCCTGAAAATTCCATTGTTAAGACGGCAAGTCCTGAAGTCATTTCTGCTCTGAACAGCCTTTGCAGTGACCCCAAGAACACTGTGTTTATAGTTAGTGGTAGGGGTCAAGACTCTCTTAGCGAATGGTTTTCTCAGTGTGAGAATCTTGGCATAGCAGCGGAGCATGGTTATTTCATAAGTTTATACACAGAGGCAACCGATGGCTCAGTAGAGAGCAAGGAGAGTGCCTTGGTATGGCACCATCTAGATGCTGATCCTGATTTTGGGTCCTGCCAGGCCAAGGAGATGTTGGATCATCTTGAAAATGTCCTTGCGAACGAGCCTGTAGTTGTTAAAAGGGGACAACATATTGTCGAAGTAAAGCCACAGGGAGTTACTAAAGGCTTGGTTGCAGAGAAAGTTCTCTCCATGATGATTGGTACAGGGAAAGCACCGGATTTTGTTTTGTGCATTGGGGATGATAGATCAGATGAGGACATGTTTGAAAGCATATCGAGCACAGCCTACAGTTCATGTCCAAATGTAACTCCTGAGATCTTTGTATGCACTGTTGGCCAAACACCGAAAAATTTACTGTTATTAGCCTAG

Protein Analysis

453

Amino Acids

49.88

Weight (kDa)

5.27

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_20 PF00982 95 - 209 3.6e-30 Glycosyltransferase family 20
Trehalose_PPase PF02358 249 - 318 3.7e-23 Trehalose-phosphatase
Trehalose_PPase PF02358 318 - 446 4.2e-40 Trehalose-phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1008
AccII CGCG 1 cut(s) 625
AciI CCGC 4 cut(s) 214, 278, 571, 929
AclI AACGTT 1 cut(s) 318
AclWI GGATC 3 cut(s) 231, 1019, 1071
AcoI YGGCCR 3 cut(s) 211, 241, 1324
AcsI RAATTY 3 cut(s) 408, 778, 1339
AcuI CTGAAG 1 cut(s) 825
AfaI GTAC 2 cut(s) 436, 1192
AfiI CCNNNNNNNGG 4 cut(s) 220, 1005, 1034, 1051
AflIII ACRYGT 1 cut(s) 1248
AgsI TTSAA 4 cut(s) 203, 512, 1073, 1256
AhdI GACNNNNNGTC 1 cut(s) 798
AjnI CCWGG 3 cut(s) 6, 500, 1044
AluBI AGCT 5 cut(s) 401, 515, 568, 600, 691
AluI AGCT 5 cut(s) 401, 515, 568, 600, 691
Alw21I GWGCWC 2 cut(s) 602, 1271
Alw26I GTCTC 1 cut(s) 672
AlwI GGATC 3 cut(s) 231, 1019, 1071
AoxI GGCC 5 cut(s) 163, 211, 241, 1047, 1324
ApeKI GCWGC 6 cut(s) 260, 263, 363, 565, 568, 926
ApoI RAATTY 3 cut(s) 408, 778, 1339
AseI ATTAAT 1 cut(s) 96
AspLEI GCGC 2 cut(s) 625, 627
AspS9I GGNCC 2 cut(s) 10, 1038
AsuHPI GGTGA 4 cut(s) 103, 111, 459, 505
AvaII GGWCC 2 cut(s) 10, 1038
BalI TGGCCA 2 cut(s) 243, 1326
BanI GGYRCC 1 cut(s) 1008
BanII GRGCYC 1 cut(s) 602
BbsI GAAGAC 1 cut(s) 341
Bbv12I GWGCWC 2 cut(s) 602, 1271
BbvI GCAGC 6 cut(s) 272, 275, 350, 555, 577, 938
BccI CCATC 3 cut(s) 752, 965, 1020
BceAI ACGGC 1 cut(s) 810
BcgI CGANNNNNNTGC 2 cut(s) 529, 563
BciT130I CCWGG 3 cut(s) 8, 502, 1046
BcoDI GTCTC 1 cut(s) 672
BfaI CTAG 4 cut(s) 153, 657, 1016, 1357
BfmI CTRYAG 4 cut(s) 258, 650, 1095, 1276
BglII AGATCT 1 cut(s) 1305
BisI GCNGC 8 cut(s) 214, 261, 264, 364, 566, 569, 572, 927
BlsI GCNGC 8 cut(s) 215, 262, 265, 365, 567, 570, 573, 928
Bme1390I CCNGG 3 cut(s) 8, 502, 1046
Bme18I GGWCC 2 cut(s) 10, 1038
BmeRI GACNNNNNGTC 1 cut(s) 798
BmgT120I GGNCC 2 cut(s) 10, 1038
BmiI GGNNCC 2 cut(s) 1010, 1039
BmrFI CCNGG 3 cut(s) 8, 502, 1046
BmsI GCATC 1 cut(s) 1009
BpiI GAAGAC 1 cut(s) 341
BsaBI GATNNNNATC 1 cut(s) 1023
BsaJI CCNNGG 5 cut(s) 244, 414, 500, 999, 1050
BsaWI WCCGGW 1 cut(s) 1204
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 1005, 1034, 1051
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 634
Bse8I GATNNNNATC 1 cut(s) 1023
BseBI CCWGG 3 cut(s) 8, 502, 1046
BseDI CCNNGG 5 cut(s) 244, 414, 500, 999, 1050
BseGI GGATG 1 cut(s) 1234
BseJI GATNNNNATC 1 cut(s) 1023
BseLI CCNNNNNNNGG 4 cut(s) 220, 1005, 1034, 1051
BseMI GCAATG 1 cut(s) 634
BseMII CTCAG 3 cut(s) 917, 990, 1293
BseNI ACTGG 1 cut(s) 296
BsePI GCGCGC 1 cut(s) 623
BseXI GCAGC 6 cut(s) 272, 275, 350, 555, 577, 938
Bsh1236I CGCG 1 cut(s) 625
BshFI GGCC 5 cut(s) 165, 213, 243, 1049, 1326
BshNI GGYRCC 1 cut(s) 1008
BsiHKAI GWGCWC 2 cut(s) 602, 1271
BsiSI CCGG 1 cut(s) 1205
BslFI GGGAC 1 cut(s) 1125
BslI CCNNNNNNNGG 4 cut(s) 220, 1005, 1034, 1051
BsmAI GTCTC 1 cut(s) 672
BsmFI GGGAC 1 cut(s) 1125
BsmI GAATGC 2 cut(s) 162, 365
BsnI GGCC 5 cut(s) 165, 213, 243, 1049, 1326
Bsp1286I GDGCHC 2 cut(s) 602, 1271
Bsp143I GATC 7 cut(s) 223, 310, 540, 1024, 1063, 1235, 1305
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 4 cut(s) 214, 278, 571, 929
BspANI GGCC 5 cut(s) 165, 213, 243, 1049, 1326
BspCNI CTCAG 3 cut(s) 916, 989, 1294
BspFNI CGCG 1 cut(s) 625
BspHI TCATGA 1 cut(s) 604
BspLI GGNNCC 2 cut(s) 1010, 1039
BspMAI CTGCAG 2 cut(s) 262, 654
BspPI GGATC 3 cut(s) 231, 1019, 1071
BspT107I GGYRCC 1 cut(s) 1008
BsrDI GCAATG 1 cut(s) 634
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 5 cut(s) 244, 414, 500, 999, 1050
BssHII GCGCGC 1 cut(s) 623
BssMI GATC 7 cut(s) 223, 310, 540, 1024, 1063, 1235, 1305
BssT1I CCWWGG 4 cut(s) 244, 414, 999, 1050
Bst2UI CCWGG 3 cut(s) 8, 502, 1046
Bst4CI ACNGT 7 cut(s) 39, 220, 471, 853, 1280, 1321, 1347
BstC8I GCNNGC 3 cut(s) 45, 379, 625
BstDEI CTNAG 4 cut(s) 887, 903, 976, 1302
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 1 cut(s) 1234
BstFNI CGCG 1 cut(s) 625
BstHHI GCGC 2 cut(s) 625, 627
BstKTI GATC 7 cut(s) 226, 313, 543, 1027, 1066, 1238, 1308
BstMAI GTCTC 1 cut(s) 672
BstMBI GATC 7 cut(s) 223, 310, 540, 1024, 1063, 1235, 1305
BstMWI GCNNNNNNNGC 5 cut(s) 40, 571, 620, 1266, 1323
BstNI CCWGG 3 cut(s) 8, 502, 1046
BstNSI RCATGY 1 cut(s) 1252
BstSCI CCNGG 3 cut(s) 6, 500, 1044
BstSFI CTRYAG 4 cut(s) 258, 650, 1095, 1276
BstUI CGCG 1 cut(s) 625
BstV1I GCAGC 6 cut(s) 272, 275, 350, 555, 577, 938
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 1305
BstYI RGATCY 1 cut(s) 1305
BsuRI GGCC 5 cut(s) 165, 213, 243, 1049, 1326
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 1 cut(s) 1234
BtsI GCAGTG 1 cut(s) 841
BtsIMutI CAGTG 5 cut(s) 225, 841, 849, 911, 1317
Cac8I GCNNGC 3 cut(s) 45, 379, 625
CciI TCATGA 1 cut(s) 604
CfoI GCGC 2 cut(s) 625, 627
Cfr13I GGNCC 2 cut(s) 10, 1038
CseI GACGC 1 cut(s) 533
Csp6I GTAC 2 cut(s) 435, 1191
CviAII CATG 9 cut(s) 85, 245, 329, 575, 605, 935, 1180, 1249, 1284
CviQI GTAC 2 cut(s) 435, 1191
DdeI CTNAG 4 cut(s) 887, 903, 976, 1302
DpnI GATC 7 cut(s) 225, 312, 542, 1026, 1065, 1237, 1307
DpnII GATC 7 cut(s) 223, 310, 540, 1024, 1063, 1235, 1305
DriI GACNNNNNGTC 1 cut(s) 798
EaeI YGGCCR 3 cut(s) 211, 241, 1324
Eam1105I GACNNNNNGTC 1 cut(s) 798
Ecl136II GAGCTC 1 cut(s) 600
Eco130I CCWWGG 4 cut(s) 244, 414, 999, 1050
Eco24I GRGCYC 1 cut(s) 602
Eco47I GGWCC 2 cut(s) 10, 1038
Eco53kI GAGCTC 1 cut(s) 600
Eco57I CTGAAG 1 cut(s) 825
EcoICRI GAGCTC 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 1038
EcoRI GAATTC 1 cut(s) 408
EcoRII CCWGG 3 cut(s) 6, 500, 1044
EcoT14I CCWWGG 4 cut(s) 244, 414, 999, 1050
EcoT38I GRGCYC 1 cut(s) 602
ErhI CCWWGG 4 cut(s) 244, 414, 999, 1050
FaeI CATG 9 cut(s) 88, 248, 332, 578, 608, 938, 1183, 1252, 1287
FalI AAGNNNNNCTT 2 cut(s) 870, 902
FaqI GGGAC 1 cut(s) 1125
FatI CATG 9 cut(s) 84, 244, 328, 574, 604, 934, 1179, 1248, 1283
FauI CCCGC 1 cut(s) 271
Fnu4HI GCNGC 8 cut(s) 214, 261, 264, 364, 566, 569, 572, 927
FokI GGATG 1 cut(s) 1241
FriOI GRGCYC 1 cut(s) 602
Fsp4HI GCNGC 8 cut(s) 214, 261, 264, 364, 566, 569, 572, 927
FspBI CTAG 4 cut(s) 153, 657, 1016, 1357
GlaI GCGC 2 cut(s) 624, 626
GluI GCNGC 8 cut(s) 214, 261, 264, 364, 566, 569, 572, 927
HaeIII GGCC 5 cut(s) 165, 213, 243, 1049, 1326
HapII CCGG 1 cut(s) 1205
HgaI GACGC 1 cut(s) 533
HhaI GCGC 2 cut(s) 625, 627
Hin1II CATG 9 cut(s) 88, 248, 332, 578, 608, 938, 1183, 1252, 1287
Hin6I GCGC 2 cut(s) 623, 625
HinP1I GCGC 2 cut(s) 623, 625
HindIII AAGCTT 2 cut(s) 399, 689
HinfI GANTC 6 cut(s) 128, 176, 419, 660, 881, 913
HpaII CCGG 1 cut(s) 1205
HphI GGTGA 4 cut(s) 103, 111, 459, 505
Hpy166II GTNNAC 2 cut(s) 437, 496
Hpy188I TCNGA 3 cut(s) 451, 822, 1240
Hpy188III TCNNGA 9 cut(s) 101, 605, 657, 803, 878, 1016, 1028, 1070, 1301
Hpy8I GTNNAC 2 cut(s) 437, 496
HpyAV CCTTC 2 cut(s) 142, 729
HpyCH4III ACNGT 7 cut(s) 39, 220, 471, 853, 1280, 1321, 1347
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 8 cut(s) 260, 366, 652, 716, 834, 1163, 1221, 1317
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 571, 620, 1266, 1323
HpyF3I CTNAG 4 cut(s) 887, 903, 976, 1302
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 9 cut(s) 88, 248, 332, 578, 608, 938, 1183, 1252, 1287
HspAI GCGC 2 cut(s) 623, 625
Kzo9I GATC 7 cut(s) 223, 310, 540, 1024, 1063, 1235, 1305
LmnI GCTCC 2 cut(s) 482, 931
Lsp1109I GCAGC 6 cut(s) 272, 275, 350, 555, 577, 938
LweI GCATC 1 cut(s) 1009
MaeI CTAG 4 cut(s) 153, 657, 1016, 1357
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 4 cut(s) 188, 836, 1144, 1294
MalI GATC 7 cut(s) 225, 312, 542, 1026, 1065, 1237, 1307
MboI GATC 7 cut(s) 223, 310, 540, 1024, 1063, 1235, 1305
MboII GAAGA 3 cut(s) 123, 346, 736
MflI RGATCY 1 cut(s) 1305
MhlI GDGCHC 2 cut(s) 602, 1271
MlsI TGGCCA 2 cut(s) 243, 1326
MluCI AATT 4 cut(s) 408, 636, 778, 1339
MluNI TGGCCA 2 cut(s) 243, 1326
MlyI GAGTC 1 cut(s) 875
MmeI TCCRAC 1 cut(s) 1041
MnlI CCTC 7 cut(s) 82, 179, 435, 678, 719, 955, 1237
Mox20I TGGCCA 2 cut(s) 243, 1326
MscI TGGCCA 2 cut(s) 243, 1326
MseI TTAA 3 cut(s) 96, 789, 1104
MslI CAYNNNNRTG 2 cut(s) 89, 1017
Msp20I TGGCCA 2 cut(s) 243, 1326
MspA1I CMGCKG 2 cut(s) 568, 929
MspI CCGG 1 cut(s) 1205
MspR9I CCNGG 3 cut(s) 8, 502, 1046
Mva1269I GAATGC 2 cut(s) 162, 365
MvaI CCWGG 3 cut(s) 8, 502, 1046
MvnI CGCG 1 cut(s) 625
MwoI GCNNNNNNNGC 5 cut(s) 40, 571, 620, 1266, 1323
NcoI CCATGG 1 cut(s) 244
NdeII GATC 7 cut(s) 223, 310, 540, 1024, 1063, 1235, 1305
NlaIII CATG 9 cut(s) 88, 248, 332, 578, 608, 938, 1183, 1252, 1287
NlaIV GGNNCC 2 cut(s) 1010, 1039
NmuCI GTSAC 1 cut(s) 836
NspI RCATGY 1 cut(s) 1252
PagI TCATGA 1 cut(s) 604
PauI GCGCGC 1 cut(s) 623
PciI ACATGT 1 cut(s) 1248
PctI GAATGC 2 cut(s) 162, 365
PfeI GAWTC 5 cut(s) 128, 176, 419, 660, 913
PkrI GCNGC 8 cut(s) 215, 262, 265, 365, 567, 570, 573, 928
PleI GAGTC 1 cut(s) 875
PpsI GAGTC 1 cut(s) 875
PpuMI RGGWCCY 1 cut(s) 1038
PscI ACATGT 1 cut(s) 1248
PshBI ATTAAT 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 602
Psp1406I AACGTT 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 1038
Psp6I CCWGG 3 cut(s) 6, 500, 1044
PspGI CCWGG 3 cut(s) 6, 500, 1044
PspN4I GGNNCC 2 cut(s) 1010, 1039
PspPI GGNCC 2 cut(s) 10, 1038
PspPPI RGGWCCY 1 cut(s) 1038
PstI CTGCAG 2 cut(s) 262, 654
PsuI RGATCY 1 cut(s) 1305
PteI GCGCGC 1 cut(s) 623
PvuII CAGCTG 1 cut(s) 568
RsaI GTAC 2 cut(s) 436, 1192
RsaNI GTAC 2 cut(s) 435, 1191
RseI CAYNNNNRTG 2 cut(s) 89, 1017
SacI GAGCTC 1 cut(s) 602
SaqAI TTAA 3 cut(s) 96, 789, 1104
SatI GCNGC 8 cut(s) 214, 261, 264, 364, 566, 569, 572, 927
Sau3AI GATC 7 cut(s) 223, 310, 540, 1024, 1063, 1235, 1305
Sau96I GGNCC 2 cut(s) 10, 1038
SchI GAGTC 1 cut(s) 875
ScrFI CCNGG 3 cut(s) 8, 502, 1046
SduI GDGCHC 2 cut(s) 602, 1271
SfaNI GCATC 1 cut(s) 1009
SfcI CTRYAG 4 cut(s) 258, 650, 1095, 1276
SinI GGWCC 2 cut(s) 10, 1038
SmiMI CAYNNNNRTG 2 cut(s) 89, 1017
Sse9I AATT 4 cut(s) 408, 636, 778, 1339
SsiI CCGC 4 cut(s) 214, 278, 571, 929
SspI AATATT 1 cut(s) 206
SspMI CTAG 4 cut(s) 153, 657, 1016, 1357
SstI GAGCTC 1 cut(s) 602
StyD4I CCNGG 3 cut(s) 6, 500, 1044
StyI CCWWGG 4 cut(s) 244, 414, 999, 1050
TaaI ACNGT 7 cut(s) 39, 220, 471, 853, 1280, 1321, 1347
TaiI ACGT 1 cut(s) 321
TaqI TCGA 3 cut(s) 733, 1125, 1265
TasI AATT 4 cut(s) 408, 636, 778, 1339
TatI WGTACW 1 cut(s) 434
TauI GCSGC 2 cut(s) 216, 574
TfiI GAWTC 5 cut(s) 128, 176, 419, 660, 913
Tru1I TTAA 3 cut(s) 96, 789, 1104
Tru9I TTAA 3 cut(s) 96, 789, 1104
TscAI CASTG 5 cut(s) 225, 841, 856, 911, 1324
TseFI GTSAC 1 cut(s) 836
TseI GCWGC 6 cut(s) 260, 263, 363, 565, 568, 926
Tsp45I GTSAC 1 cut(s) 836
TspDTI ATGAA 5 cut(s) 189, 306, 445, 934, 1272
TspGWI ACGGA 1 cut(s) 648
TspRI CASTG 5 cut(s) 225, 841, 856, 911, 1324
VpaK11BI GGWCC 2 cut(s) 10, 1038
VspI ATTAAT 1 cut(s) 96
XapI RAATTY 3 cut(s) 408, 778, 1339
XbaI TCTAGA 2 cut(s) 656, 1015
XceI RCATGY 1 cut(s) 1252
XcmI CCANNNNNNNNNTGG 1 cut(s) 1057
XspI CTAG 4 cut(s) 153, 657, 1016, 1357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.