Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012638.1

Orthogroup ID

OG0001202

Physical Location & Seq

Genomic Coordinates Forward (+)

55824 .. 57005

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012638.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atggcttcaagatcttgtgcaaaccttttggaattggcatctggagttttggatattccttgtactccaagtccaaggacccttcctcgggtgatgactgttcctggtattatctctgatgtcgatagttacagcaatgatgatggggattcagatggcacttcatctgtttgccgtgagcggaaaattgtagttgcgaatatgttacctttacatgctaaaagggatccagaaacaaacaaatggtgcttcagtttggatgaggattcaattttgatacatttaaaggacgggttttcatgtgaaactgaggttgtttatgtggggtctctcaaggctgaaatagatgctagtgaacaagatgaggttgcacagaaactgctggaggaattcaattgtgtgccaacatttctgcccagtgatctccagaaaaagttctatttgggtttctgtaaacggcaactatggccccttttccattatatgttgcccatgtgcccagaccatggtgaccgctttgaccgctcattgtggcaggcctacgtatctgcaaataaaatatatgcagacaaggtgatggaagttattaatcctgaggatgattgtgtctgggttcacgattatcatttgatggttctcccaacatttctgaggaagcgatactatcgggtaaagcttgggttttttcttcacagcccatttccatcatcagaaatttatcgaactttgaccgttcgagatgaaatcttgagaggtttactgaattgtgacctaattggttttcatacatttgattatgcacgtcacttcctctcctgctgcagcagaatgctgggccttgactatgaatctaagcgaggacacattgggcttgattattttggccgcacagtttacattaaaattctgcctgtaggagttcatatgggtcggcttgaatctgcattgaatcttccctccacaaccgccaaagtcaaagagattcaagaacagtttaaggggaaaaaagtgatccttggcattgatgacatggacatatttaaaggcatcagtctaaaacttctagctgtagaacaactcttacagcagaatccagagttgcagggcaaaatagtcctggtccaaattgtgaatcctgcgaggggctttgggaaagatgtacaggcaaggggaaaaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0033554 GO:0034637 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0050896 GO:0051716 GO:0070413 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

393

Amino Acids

44.71

Weight (kDa)

6.42

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23870 AT1G60140 AT1G60140 AT1G60140 AT1G60140 AT1G60140 AT1G60140 AT1G70290 AT1G70290
fragaria_vesca	FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_4g34800 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100 FvH4_5g05100
malus_domestica	MD00G1171800.v1.1 MD13G1089600.v1.1 MD14G1183700.v1.1 MD16G1089800.v1.1
prunus_persica	Prupe.1G256200_v2.0.a1 Prupe.5G176400_v2.0.a1
pyrus_communis	pycom06g15770 pycom13g07810 pycom14g15280 pycom16g07690
rosa_chinensis	RchiOBHm_Chr4g0444141 RchiOBHm_Chr7g0193901
rosa_laevigata	RLG00000004229 RLG00000004235 RLG00000005852
rosa_multiflora	Rmu_co8448227.1_g000001 Rmu_sc0012638.1_g000011
rosa_roxburghii	Rroxscaffold_3G00261720 Rroxscaffold_5G00384730
rosa_rugosa	Rorug04G0350400 Rorug07G0012500 Rorug07G0012600 Rorug07G0012700
rosa_samantha	Rh4AG411000 Rh4BG422400 Rh4CG436800 Rh4DG417700 Rh7BG140000 Rh7CG143700
rosa_wichuraiana	Rw4G035310 Rw7G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccBSI	CCGCTC	2 cut(s)	181, 525
AciI	CCGC	5 cut(s)	181, 514, 523, 886, 966
AclWI	GGATC	3 cut(s)	221, 234, 1006
AcoI	YGGCCR	1 cut(s)	883
AcsI	RAATTY	3 cut(s)	389, 714, 903
AcuI	CTGAAG	1 cut(s)	235
AfaI	GTAC	2 cut(s)	64, 1161
AfiI	CCNNNNNNNGG	4 cut(s)	87, 88, 506, 1142
AgsI	TTSAA	6 cut(s)	9, 270, 394, 938, 949, 986
AjiI	CACGTC	1 cut(s)	803
AjnI	CCWGG	2 cut(s)	103, 1116
AluBI	AGCT	2 cut(s)	676, 1067
AluI	AGCT	2 cut(s)	676, 1067
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	3 cut(s)	221, 234, 1006
AlwNI	CAGNNNCTG	1 cut(s)	379
Ama87I	CYCGRG	1 cut(s)	87
AoxI	GGCC	4 cut(s)	467, 537, 835, 883
ApeKI	GCWGC	2 cut(s)	819, 822
ApoI	RAATTY	3 cut(s)	389, 714, 903
AseI	ATTAAT	1 cut(s)	588
Asp700I	GAANNNNTTC	1 cut(s)	434
AspS9I	GGNCC	4 cut(s)	78, 468, 835, 1120
AsuHPI	GGTGA	3 cut(s)	103, 521, 586
AvaI	CYCGRG	1 cut(s)	87
AvaII	GGWCC	2 cut(s)	78, 1120
AxyI	CCTNAGG	1 cut(s)	594
BaeGI	GKGCMC	1 cut(s)	500
BamHI	GGATCC	1 cut(s)	226
BbvI	GCAGC	2 cut(s)	806, 834
BccI	CCATC	5 cut(s)	137, 149, 571, 625, 712
BceAI	ACGGC	2 cut(s)	159, 473
BciT130I	CCWGG	2 cut(s)	105, 1118
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	2 cut(s)	351, 1064
BfmI	CTRYAG	3 cut(s)	820, 912, 1068
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	3 cut(s)	820, 823, 886
BlsI	GCNGC	3 cut(s)	821, 824, 887
Bme1390I	CCNGG	2 cut(s)	105, 1118
Bme18I	GGWCC	2 cut(s)	78, 1120
BmeT110I	CYCGRG	1 cut(s)	87
BmgBI	CACGTC	1 cut(s)	803
BmgT120I	GGNCC	4 cut(s)	78, 468, 835, 1120
BmiI	GGNNCC	3 cut(s)	80, 228, 470
BmrFI	CCNGG	2 cut(s)	105, 1118
BmrI	ACTGGG	1 cut(s)	411
BmsI	GCATC	3 cut(s)	47, 337, 1056
BmuI	ACTGGG	1 cut(s)	411
BpmI	CTGGAG	3 cut(s)	63, 404, 410
BpuEI	CTTGAG	2 cut(s)	317, 769
BsaAI	YACGTR	1 cut(s)	544
BsaI	GGTCTC	1 cut(s)	333
BsaJI	CCNNGG	4 cut(s)	74, 86, 505, 1015
BsaXI	ACNNNNNCTCC	2 cut(s)	797, 827
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 88, 506, 1142
Bse1I	ACTGG	1 cut(s)	417
Bse21I	CCTNAGG	1 cut(s)	594
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	105, 1118
BseDI	CCNNGG	4 cut(s)	74, 86, 505, 1015
BseGI	GGATG	2 cut(s)	265, 604
BseLI	CCNNNNNNNGG	4 cut(s)	87, 88, 506, 1142
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	3 cut(s)	300, 585, 641
BseNI	ACTGG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	500
BseXI	GCAGC	2 cut(s)	806, 834
BseYI	CCCAGC	1 cut(s)	832
BshFI	GGCC	4 cut(s)	469, 539, 837, 885
BsiHKCI	CYCGRG	1 cut(s)	87
BslI	CCNNNNNNNGG	4 cut(s)	87, 88, 506, 1142
BsmAI	GTCTC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	834
BsnI	GGCC	4 cut(s)	469, 539, 837, 885
Bso31I	GGTCTC	1 cut(s)	333
BsoBI	CYCGRG	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp1407I	TGTACA	1 cut(s)	1159
Bsp143I	GATC	4 cut(s)	11, 226, 421, 1011
Bsp19I	CCATGG	1 cut(s)	505
BspACI	CCGC	5 cut(s)	181, 514, 523, 886, 966
BspANI	GGCC	4 cut(s)	469, 539, 837, 885
BspCNI	CTCAG	3 cut(s)	301, 586, 642
BspLI	GGNNCC	3 cut(s)	80, 228, 470
BspMAI	CTGCAG	1 cut(s)	824
BspPI	GGATC	3 cut(s)	221, 234, 1006
BspTNI	GGTCTC	1 cut(s)	333
BsrBI	CCGCTC	2 cut(s)	181, 525
BsrDI	GCAATG	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	1159
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	4 cut(s)	74, 86, 505, 1015
BssMI	GATC	4 cut(s)	11, 226, 421, 1011
BssT1I	CCWWGG	3 cut(s)	74, 505, 1015
Bst2UI	CCWGG	2 cut(s)	105, 1118
Bst4CI	ACNGT	4 cut(s)	100, 733, 892, 993
BstAUI	TGTACA	1 cut(s)	1159
BstBAI	YACGTR	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	4 cut(s)	309, 594, 650, 852
BstDSI	CCRYGG	1 cut(s)	505
BstEII	GGTNACC	1 cut(s)	509
BstF5I	GGATG	2 cut(s)	265, 604
BstKTI	GATC	4 cut(s)	14, 229, 424, 1014
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	4 cut(s)	11, 226, 421, 1011
BstMWI	GCNNNNNNNGC	2 cut(s)	466, 522
BstNI	CCWGG	2 cut(s)	105, 1118
BstNSI	RCATGY	1 cut(s)	218
BstPI	GGTNACC	1 cut(s)	509
BstSCI	CCNGG	2 cut(s)	103, 1116
BstSFI	CTRYAG	3 cut(s)	820, 912, 1068
BstSLI	GKGCMC	1 cut(s)	500
BstSNI	TACGTA	1 cut(s)	544
BstV1I	GCAGC	2 cut(s)	806, 834
BstX2I	RGATCY	2 cut(s)	11, 226
BstYI	RGATCY	2 cut(s)	11, 226
Bsu36I	CCTNAGG	1 cut(s)	594
BsuRI	GGCC	4 cut(s)	469, 539, 837, 885
BtgI	CCRYGG	1 cut(s)	505
BtrI	CACGTC	1 cut(s)	803
BtsCI	GGATG	2 cut(s)	265, 604
BtsIMutI	CAGTG	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	537
CaiI	CAGNNNCTG	1 cut(s)	379
Cfr13I	GGNCC	4 cut(s)	78, 468, 835, 1120
Csp6I	GTAC	2 cut(s)	63, 1160
CviAII	CATG	5 cut(s)	215, 300, 493, 506, 1030
CviQI	GTAC	2 cut(s)	63, 1160
DdeI	CTNAG	4 cut(s)	309, 594, 650, 852
DpnI	GATC	4 cut(s)	13, 228, 423, 1013
DpnII	GATC	4 cut(s)	11, 226, 421, 1011
DraI	TTTAAA	2 cut(s)	285, 1042
EaeI	YGGCCR	1 cut(s)	883
Eco105I	TACGTA	1 cut(s)	544
Eco130I	CCWWGG	3 cut(s)	74, 505, 1015
Eco147I	AGGCCT	1 cut(s)	539
Eco31I	GGTCTC	1 cut(s)	333
Eco47I	GGWCC	2 cut(s)	78, 1120
Eco57I	CTGAAG	1 cut(s)	235
Eco81I	CCTNAGG	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	87
Eco91I	GGTNACC	1 cut(s)	509
EcoO109I	RGGNCCY	1 cut(s)	78
EcoO65I	GGTNACC	1 cut(s)	509
EcoRI	GAATTC	1 cut(s)	389
EcoRII	CCWGG	2 cut(s)	103, 1116
EcoT14I	CCWWGG	3 cut(s)	74, 505, 1015
ErhI	CCWWGG	3 cut(s)	74, 505, 1015
FaeI	CATG	5 cut(s)	218, 303, 496, 509, 1033
FalI	AAGNNNNNCTT	2 cut(s)	999, 1031
FatI	CATG	5 cut(s)	214, 299, 492, 505, 1029
FauNDI	CATATG	1 cut(s)	924
Fnu4HI	GCNGC	3 cut(s)	820, 823, 886
FokI	GGATG	2 cut(s)	272, 611
Fsp4HI	GCNGC	3 cut(s)	820, 823, 886
FspBI	CTAG	2 cut(s)	351, 1064
GluI	GCNGC	3 cut(s)	820, 823, 886
GsaI	CCCAGC	1 cut(s)	836
GsuI	CTGGAG	3 cut(s)	63, 404, 410
HaeIII	GGCC	4 cut(s)	469, 539, 837, 885
Hin1II	CATG	5 cut(s)	218, 303, 496, 509, 1033
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	8 cut(s)	149, 266, 848, 938, 949, 982, 1090, 1132
HphI	GGTGA	3 cut(s)	103, 521, 586
Hpy166II	GTNNAC	5 cut(s)	356, 455, 616, 758, 895
Hpy188I	TCNGA	4 cut(s)	118, 154, 651, 712
Hpy8I	GTNNAC	5 cut(s)	356, 455, 616, 758, 895
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	4 cut(s)	100, 733, 892, 993
HpyCH4IV	ACGT	2 cut(s)	543, 802
HpyCH4V	TGCA	8 cut(s)	20, 371, 551, 566, 800, 822, 944, 1102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	466, 522
HpyF3I	CTNAG	4 cut(s)	309, 594, 650, 852
HpySE526I	ACGT	2 cut(s)	543, 802
Hsp92II	CATG	5 cut(s)	218, 303, 496, 509, 1033
Kzo9I	GATC	4 cut(s)	11, 226, 421, 1011
Lsp1109I	GCAGC	2 cut(s)	806, 834
LweI	GCATC	3 cut(s)	47, 337, 1056
MaeI	CTAG	2 cut(s)	351, 1064
MaeII	ACGT	2 cut(s)	543, 802
MaeIII	GTNAC	5 cut(s)	128, 204, 509, 767, 803
MalI	GATC	4 cut(s)	13, 228, 423, 1013
MbiI	CCGCTC	2 cut(s)	181, 525
MboI	GATC	4 cut(s)	11, 226, 421, 1011
MboII	GAAGA	2 cut(s)	680, 944
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	2 cut(s)	11, 226
MhlI	GDGCHC	1 cut(s)	500
MroXI	GAANNNNTTC	1 cut(s)	434
MseI	TTAA	5 cut(s)	284, 588, 900, 996, 1041
MspR9I	CCNGG	2 cut(s)	105, 1118
MunI	CAATTG	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	834
MvaI	CCWGG	2 cut(s)	105, 1118
MwoI	GCNNNNNNNGC	2 cut(s)	466, 522
NcoI	CCATGG	1 cut(s)	505
NdeI	CATATG	1 cut(s)	924
NdeII	GATC	4 cut(s)	11, 226, 421, 1011
NlaIII	CATG	5 cut(s)	218, 303, 496, 509, 1033
NlaIV	GGNNCC	3 cut(s)	80, 228, 470
NmuCI	GTSAC	3 cut(s)	509, 767, 803
NspI	RCATGY	1 cut(s)	218
PceI	AGGCCT	1 cut(s)	539
PctI	GAATGC	1 cut(s)	834
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	8 cut(s)	149, 266, 848, 938, 949, 982, 1090, 1132
PflMI	CCANNNNNTGG	1 cut(s)	506
PkrI	GCNGC	3 cut(s)	821, 824, 887
Ppu21I	YACGTR	1 cut(s)	544
PpuMI	RGGWCCY	1 cut(s)	78
PshBI	ATTAAT	1 cut(s)	588
Psp5II	RGGWCCY	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	103, 1116
PspEI	GGTNACC	1 cut(s)	509
PspFI	CCCAGC	1 cut(s)	832
PspGI	CCWGG	2 cut(s)	103, 1116
PspN4I	GGNNCC	3 cut(s)	80, 228, 470
PspPI	GGNCC	4 cut(s)	78, 468, 835, 1120
PspPPI	RGGWCCY	1 cut(s)	78
PsrI	GAACNNNNNNTAC	2 cut(s)	1065, 1097
PstI	CTGCAG	1 cut(s)	824
PstNI	CAGNNNCTG	1 cut(s)	379
PsuI	RGATCY	2 cut(s)	11, 226
RsaI	GTAC	2 cut(s)	64, 1161
RsaNI	GTAC	2 cut(s)	63, 1160
SaqAI	TTAA	5 cut(s)	284, 588, 900, 996, 1041
SatI	GCNGC	3 cut(s)	820, 823, 886
Sau3AI	GATC	4 cut(s)	11, 226, 421, 1011
Sau96I	GGNCC	4 cut(s)	78, 468, 835, 1120
ScrFI	CCNGG	2 cut(s)	105, 1118
SduI	GDGCHC	1 cut(s)	500
SfaNI	GCATC	3 cut(s)	47, 337, 1056
SfcI	CTRYAG	3 cut(s)	820, 912, 1068
SinI	GGWCC	2 cut(s)	78, 1120
SmlI	CTYRAG	2 cut(s)	332, 748
SmoI	CTYRAG	2 cut(s)	332, 748
SnaBI	TACGTA	1 cut(s)	544
SseBI	AGGCCT	1 cut(s)	539
SsiI	CCGC	5 cut(s)	181, 514, 523, 886, 966
SspMI	CTAG	2 cut(s)	351, 1064
StuI	AGGCCT	1 cut(s)	539
StyD4I	CCNGG	2 cut(s)	103, 1116
StyI	CCWWGG	3 cut(s)	74, 505, 1015
TaaI	ACNGT	4 cut(s)	100, 733, 892, 993
TaiI	ACGT	2 cut(s)	546, 805
TaqI	TCGA	3 cut(s)	123, 721, 736
TatI	WGTACW	2 cut(s)	62, 1159
TauI	GCSGC	1 cut(s)	888
TfiI	GAWTC	8 cut(s)	149, 266, 848, 938, 949, 982, 1090, 1132
Tru1I	TTAA	5 cut(s)	284, 588, 900, 996, 1041
Tru9I	TTAA	5 cut(s)	284, 588, 900, 996, 1041
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	3 cut(s)	509, 767, 803
TseI	GCWGC	2 cut(s)	819, 822
Tsp45I	GTSAC	3 cut(s)	509, 767, 803
TspDTI	ATGAA	6 cut(s)	153, 288, 756, 773, 861, 911
TspRI	CASTG	1 cut(s)	424
Van91I	CCANNNNNTGG	1 cut(s)	506
VpaK11BI	GGWCC	2 cut(s)	78, 1120
VspI	ATTAAT	1 cut(s)	588
XapI	RAATTY	3 cut(s)	389, 714, 903
XceI	RCATGY	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	2 cut(s)	351, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.