Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0020450

Physical Location & Seq

Genomic Coordinates Forward (+)

18143380 .. 18144681

Gene Structure 1302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGGAGCTCGGACGAGAAGGTGGTTGCTGTGATCATGGTGGGTGGGCCCACTAAAGGAACTAGATTCCGGCCATTGTCACTGAATATACCGAAGCCGCTTTTTCCATTAGCAGGACAACCAATGGTTCATCATCCGATTTCCGCTTGTAAAAGGATTCCGAACCTCACACAAATTTTCCTCATTGGTTTCTACGAGGAGCGTGAATTTGCGTTATATGTGTCTTCAATTTCTAATGAGCTTAAAGTCCCTGTTAGATATTTGAGGGAAGACAAGCCACATGGATCAGCTGGTGGACTTTATAATTTCAGAGATCTGATCATGGAAGACAACCCGTCGCACATTGTCTTGTTGAATTGTGATGTTTGCTGCAGTTTTCCGCTTCCAGAAATGCTTGAGGCTCACAAAAAATATGGTGGTATGGGAACAATCCTTGTGATCAAGGTTTCTGCTGAATCAGCCAGTCAGTTTGGGGAACTGGTAGCTCGATCCGGTCACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004475 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008905 GO:0009058 GO:0009225 GO:0009226 GO:0009298 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019673 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046483 GO:0055086 GO:0070568 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110

Pfam Domains

Protein Families

Hexapep NTP_transferase

Protein Analysis

168

Amino Acids

18.41

Weight (kDa)

7.72

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	10 - 160	8.1e-24	Nucleotidyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020450)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g15540
rosa_chinensis	RchiOBHm_Chr5g0039351
rosa_laevigata	RLG00000018459
rosa_multiflora	Rmu_sc0000193.1_g000030
rosa_samantha	Rh2CG598700 Rh7DG259100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AciI	CCGC	3 cut(s)	98, 144, 380
AclWI	GGATC	2 cut(s)	292, 483
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	174, 206
AfiI	CCNNNNNNNGG	2 cut(s)	56, 113
AgsI	TTSAA	2 cut(s)	228, 355
AhdI	GACNNNNNGTC	1 cut(s)	334
AluBI	AGCT	4 cut(s)	9, 241, 290, 485
AluI	AGCT	4 cut(s)	9, 241, 290, 485
Alw21I	GWGCWC	1 cut(s)	11
AlwI	GGATC	2 cut(s)	292, 483
AoxI	GGCC	2 cut(s)	47, 71
ApaI	GGGCCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	369
ApoI	RAATTY	2 cut(s)	174, 206
AspS9I	GGNCC	2 cut(s)	47, 48
AsuHPI	GGTGA	1 cut(s)	488
BaeGI	GKGCMC	1 cut(s)	51
BanII	GRGCYC	2 cut(s)	11, 51
BbsI	GAAGAC	3 cut(s)	216, 276, 333
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	356
BclI	TGATCA	3 cut(s)	33, 318, 438
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	370
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	2 cut(s)	98, 370
BlsI	GCNGC	2 cut(s)	99, 371
BmeRI	GACNNNNNGTC	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	47, 48
BmiI	GGNNCC	1 cut(s)	49
BpiI	GAAGAC	3 cut(s)	216, 276, 333
BpuEI	CTTGAG	1 cut(s)	416
BsaWI	WCCGGW	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 113
Bse1I	ACTGG	2 cut(s)	462, 483
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	2 cut(s)	56, 113
BseNI	ACTGG	2 cut(s)	462, 483
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	356
BshFI	GGCC	2 cut(s)	49, 73
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	70, 492
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	56, 113
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	49, 73
Bsp120I	GGGCCC	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	11, 51
Bsp143I	GATC	6 cut(s)	33, 284, 313, 318, 438, 488
BspACI	CCGC	3 cut(s)	98, 144, 380
BspANI	GGCC	2 cut(s)	49, 73
BspLI	GGNNCC	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	374
BspPI	GGATC	2 cut(s)	292, 483
BsrI	ACTGG	2 cut(s)	462, 483
BssMI	GATC	6 cut(s)	33, 284, 313, 318, 438, 488
BstEII	GGTNACC	1 cut(s)	494
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	6 cut(s)	36, 287, 316, 321, 441, 491
BstMBI	GATC	6 cut(s)	33, 284, 313, 318, 438, 488
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstPI	GGTNACC	1 cut(s)	494
BstSFI	CTRYAG	1 cut(s)	370
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	356
BstV2I	GAAGAC	3 cut(s)	216, 276, 333
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	49, 73
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	47, 48
CviAII	CATG	3 cut(s)	37, 281, 322
DpnI	GATC	6 cut(s)	35, 286, 315, 320, 440, 490
DpnII	GATC	6 cut(s)	33, 284, 313, 318, 438, 488
DriI	GACNNNNNGTC	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	71
Eam1105I	GACNNNNNGTC	1 cut(s)	334
Ecl136II	GAGCTC	1 cut(s)	9
Eco24I	GRGCYC	2 cut(s)	11, 51
Eco53kI	GAGCTC	1 cut(s)	9
Eco91I	GGTNACC	1 cut(s)	494
EcoICRI	GAGCTC	1 cut(s)	9
EcoO65I	GGTNACC	1 cut(s)	494
EcoT38I	GRGCYC	2 cut(s)	11, 51
FaeI	CATG	3 cut(s)	40, 284, 325
FaiI	YATR	9 cut(s)	38, 89, 217, 219, 282, 303, 323, 414, 422
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	3 cut(s)	36, 280, 321
FbaI	TGATCA	3 cut(s)	33, 318, 438
Fnu4HI	GCNGC	2 cut(s)	98, 370
FokI	GGATG	1 cut(s)	120
FriOI	GRGCYC	2 cut(s)	11, 51
Fsp4HI	GCNGC	2 cut(s)	98, 370
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	2 cut(s)	98, 370
HaeIII	GGCC	2 cut(s)	49, 73
HapII	CCGG	2 cut(s)	70, 492
Hin1II	CATG	3 cut(s)	40, 284, 325
HinfI	GANTC	3 cut(s)	66, 157, 455
HpaII	CCGG	2 cut(s)	70, 492
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	5 cut(s)	13, 138, 162, 311, 318
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	1 cut(s)	13
HpyCH4V	TGCA	1 cut(s)	372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
Hsp92II	CATG	3 cut(s)	40, 284, 325
Ksp22I	TGATCA	3 cut(s)	33, 318, 438
Kzo9I	GATC	6 cut(s)	33, 284, 313, 318, 438, 488
LmnI	GCTCC	2 cut(s)	6, 199
LpnPI	CCDG	7 cut(s)	83, 99, 264, 276, 399, 464, 475
Lsp1109I	GCAGC	1 cut(s)	356
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	78, 494
MalI	GATC	6 cut(s)	35, 286, 315, 320, 440, 490
MboI	GATC	6 cut(s)	33, 284, 313, 318, 438, 488
MboII	GAAGA	3 cut(s)	216, 281, 338
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	2 cut(s)	11, 51
MluCI	AATT	5 cut(s)	174, 206, 228, 304, 355
MnlI	CCTC	5 cut(s)	176, 190, 191, 258, 391
MseI	TTAA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	2 cut(s)	70, 492
MwoI	GCNNNNNNNGC	1 cut(s)	458
NdeII	GATC	6 cut(s)	33, 284, 313, 318, 438, 488
NlaIII	CATG	3 cut(s)	40, 284, 325
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	2 cut(s)	78, 494
PfeI	GAWTC	3 cut(s)	66, 157, 455
PkrI	GCNGC	2 cut(s)	99, 371
PsiI	TTATAA	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	11
PspEI	GGTNACC	1 cut(s)	494
PspN4I	GGNNCC	1 cut(s)	49
PspOMI	GGGCCC	1 cut(s)	47
PspPI	GGNCC	2 cut(s)	47, 48
PstI	CTGCAG	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	290
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	98, 370
Sau3AI	GATC	6 cut(s)	33, 284, 313, 318, 438, 488
Sau96I	GGNCC	2 cut(s)	47, 48
SduI	GDGCHC	2 cut(s)	11, 51
SetI	ASST	7 cut(s)	11, 24, 168, 243, 292, 447, 487
SfcI	CTRYAG	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	5 cut(s)	174, 206, 228, 304, 355
SsiI	CCGC	3 cut(s)	98, 144, 380
SspMI	CTAG	1 cut(s)	63
SstI	GAGCTC	1 cut(s)	11
TaqI	TCGA	1 cut(s)	487
TasI	AATT	5 cut(s)	174, 206, 228, 304, 355
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	3 cut(s)	66, 157, 455
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	2 cut(s)	78, 494
TseI	GCWGC	1 cut(s)	369
Tsp45I	GTSAC	2 cut(s)	78, 494
TspDTI	ATGAA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	87
XapI	RAATTY	2 cut(s)	174, 206
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.