RLG00000018459

Mannose-1-phosphate guanyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0020450
Physical Location & Seq
Reverse (-)
30016526 .. 30017202
677 bp
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UTR
Exon/CDS
Intron
RLM00000018459

Sequence Viewer

Length: 363 bp
ATGAGGAGCGTGAGTTTGCACTCTGTTTCTTCGATTTCCAATGAGCTTAGAGTACCGGTGAGGTACTTGAAAGAGGATAAACCACATGCCTCAGCTGGCGGTATTTATTACTTCAGAGATTTGATCATGGAAGAAGGCCCGTCGCATATCTTTTTGCTGAATTGTGATGTATGCTGCAGTTTTCCACTTCCAGATATGCTTGAGGCTCATATAAAATACGGTGGAATGGGTACAATGCTAGTAATCAAGGTTTCTGCGGAATCTGCCAACGAGTTTGGTGAGTTGGTTGCTGATCCAGTCACCAAAGAACTGTTGCATTACACTGAGAAACCAGAGACTTTTGTATGTGCATGGTGCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110
Pfam Domains
Protein Families
Hexapep NTP_transferase

Protein Analysis

121

Amino Acids

13.4

Weight (kDa)

5.25

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 12 - 114 2.6e-10 Nucleotidyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020450)

Species Orthologous Gene IDs
pyrus_communis pycom14g15540
rosa_chinensis RchiOBHm_Chr5g0039351
rosa_laevigata RLG00000018459
rosa_multiflora Rmu_sc0000193.1_g000030
rosa_samantha Rh2CG598700 Rh7DG259100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 99, 257
AclWI GGATC 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 97
AfaI GTAC 3 cut(s) 54, 65, 232
AgeI ACCGGT 1 cut(s) 55
AgsI TTSAA 1 cut(s) 70
AluBI AGCT 2 cut(s) 46, 95
AluI AGCT 2 cut(s) 46, 95
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 1 cut(s) 287
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 174
AsiGI ACCGGT 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 3 cut(s) 70, 290, 292
BbvCI CCTCAGC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 161
BclI TGATCA 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 175
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 296
BseMII CTCAG 2 cut(s) 105, 315
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 161
BshFI GGCC 1 cut(s) 138
BshTI ACCGGT 1 cut(s) 55
BsiSI CCGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 329
BsnI GGCC 1 cut(s) 138
Bsp143I GATC 2 cut(s) 123, 292
BspACI CCGC 2 cut(s) 99, 257
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 104, 316
BspMAI CTGCAG 1 cut(s) 179
BspPI GGATC 1 cut(s) 287
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 55
BssMI GATC 2 cut(s) 123, 292
Bst4CI ACNGT 2 cut(s) 221, 312
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 3 cut(s) 47, 91, 324
BstKTI GATC 2 cut(s) 126, 295
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 2 cut(s) 123, 292
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNSI RCATGY 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 97
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 137
Csp6I GTAC 3 cut(s) 53, 64, 231
CspAI ACCGGT 1 cut(s) 55
CviAII CATG 3 cut(s) 86, 127, 351
CviJI RGCY 4 cut(s) 46, 95, 138, 206
CviKI_1 RGCY 4 cut(s) 46, 95, 138, 206
CviQI GTAC 3 cut(s) 53, 64, 231
DdeI CTNAG 3 cut(s) 47, 91, 324
DpnI GATC 2 cut(s) 125, 294
DpnII GATC 2 cut(s) 123, 292
Eco57I CTGAAG 1 cut(s) 97
FaeI CATG 3 cut(s) 89, 130, 354
FaiI YATR 9 cut(s) 87, 128, 147, 172, 197, 210, 212, 346, 352
FatI CATG 3 cut(s) 85, 126, 350
FbaI TGATCA 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 175
FspBI CTAG 1 cut(s) 239
GluI GCNGC 1 cut(s) 175
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 56
Hin1II CATG 3 cut(s) 89, 130, 354
HinfI GANTC 1 cut(s) 260
HpaII CCGG 1 cut(s) 56
HphI GGTGA 3 cut(s) 70, 290, 292
Hpy188I TCNGA 1 cut(s) 116
Hpy188III TCNNGA 1 cut(s) 191
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 2 cut(s) 221, 312
HpyCH4V TGCA 5 cut(s) 19, 177, 316, 350, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 3 cut(s) 47, 91, 324
Hsp92II CATG 3 cut(s) 89, 130, 354
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 2 cut(s) 123, 292
LmnI GCTCC 1 cut(s) 6
LpnPI CCDG 5 cut(s) 69, 81, 204, 309, 345
Lsp1109I GCAGC 1 cut(s) 161
MaeI CTAG 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 125, 294
MboI GATC 2 cut(s) 123, 292
MboII GAAGA 2 cut(s) 21, 143
MluCI AATT 1 cut(s) 160
MnlI CCTC 4 cut(s) 54, 67, 100, 196
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeII GATC 2 cut(s) 123, 292
NlaIII CATG 3 cut(s) 89, 130, 354
NmuCI GTSAC 1 cut(s) 298
NspI RCATGY 1 cut(s) 89
PfeI GAWTC 1 cut(s) 260
PinAI ACCGGT 1 cut(s) 55
PkrI GCNGC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 137
PstI CTGCAG 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 3 cut(s) 54, 65, 232
RsaNI GTAC 3 cut(s) 53, 64, 231
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 2 cut(s) 123, 292
Sau96I GGNCC 1 cut(s) 137
SetI ASST 4 cut(s) 48, 65, 97, 252
SfcI CTRYAG 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 1 cut(s) 160
SsiI CCGC 2 cut(s) 99, 257
SspMI CTAG 1 cut(s) 239
TaaI ACNGT 2 cut(s) 221, 312
TaqI TCGA 1 cut(s) 32
TasI AATT 1 cut(s) 160
TfiI GAWTC 1 cut(s) 260
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 298
TspRI CASTG 1 cut(s) 328
XceI RCATGY 1 cut(s) 89
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.