RchiOBHm_Chr5g0039351

Mannose-1-phosphate guanyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0020450
Physical Location & Seq
Forward (+)
34001520 .. 34003343
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31792

Sequence Viewer

Length: 477 bp
ATGCGTTTCTTTTCTTCTGCTTGGGTTTTGTTGGGCTGTTCGATTTTTCCTCAAATTGCAGGCAAAAAGTTAAGGATACCCAATTTGGCTCACATTTTTCTAATTGGGTTTTATGAGGAGCGTGAGTTTGCACTCTATGTTTCTTCGATTTCCAATGAGCTTAGAGTGCCGGTGAGGTACTTGAAAGAGGATAAACCACATGGCTCAACTGGTGGTATGTATTACTTCAGAGATATGATCATGGAAGACGGCCCGTCGCATATCTTTTTGCTGAATTGTGATGTATGCTGCAGTTTTCCGCTTCCAGATATGCTTGAGGCTCATATAAAATACGGTGGAATGGGTACAATGCTAGTAATCAAGGTTTCTGCGGAATCTGCCAACGAGTTTGGTGAGTTGGTTGCTGATCTAGTCACCAAAGAACTGTTGCATTACACTGAGAAACCAGAGACTTTTGTATGTGCATGGTGCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110
Pfam Domains
Protein Families
Hexapep NTP_transferase

Protein Analysis

158

Amino Acids

17.93

Weight (kDa)

5.5

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 46 - 152 6e-10 Nucleotidyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020450)

Species Orthologous Gene IDs
pyrus_communis pycom14g15540
rosa_chinensis RchiOBHm_Chr5g0039351
rosa_laevigata RLG00000018459
rosa_multiflora Rmu_sc0000193.1_g000030
rosa_samantha Rh2CG598700 Rh7DG259100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 299, 371
AcuI CTGAAG 1 cut(s) 211
AfaI GTAC 2 cut(s) 179, 346
AgsI TTSAA 1 cut(s) 184
AhdI GACNNNNNGTC 1 cut(s) 253
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 443
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 3 cut(s) 184, 404, 406
BbsI GAAGAC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 265
BciVI GTATCC 1 cut(s) 69
BclI TGATCA 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 443
BfaI CTAG 2 cut(s) 353, 410
BfmI CTRYAG 1 cut(s) 289
BfuI GTATCC 1 cut(s) 69
BisI GCNGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 290
BmeRI GACNNNNNGTC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 251
BpiI GAAGAC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 275
BshFI GGCC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 443
BsnI GGCC 1 cut(s) 252
Bsp143I GATC 2 cut(s) 237, 406
BspACI CCGC 2 cut(s) 299, 371
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 1 cut(s) 430
BspMAI CTGCAG 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 169
BssMI GATC 2 cut(s) 237, 406
Bst4CI ACNGT 2 cut(s) 335, 426
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 2 cut(s) 161, 438
BstKTI GATC 2 cut(s) 240, 409
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 2 cut(s) 237, 406
BstMWI GCNNNNNNNGC 2 cut(s) 166, 377
BstSFI CTRYAG 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 275
BstV2I GAAGAC 1 cut(s) 252
BsuI GTATCC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 435
Cac8I GCNNGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 2 cut(s) 178, 345
CviAII CATG 3 cut(s) 200, 241, 465
CviJI RGCY 6 cut(s) 36, 89, 160, 204, 252, 320
CviKI_1 RGCY 6 cut(s) 36, 89, 160, 204, 252, 320
CviQI GTAC 2 cut(s) 178, 345
DdeI CTNAG 2 cut(s) 161, 438
DpnI GATC 2 cut(s) 239, 408
DpnII GATC 2 cut(s) 237, 406
DriI GACNNNNNGTC 1 cut(s) 253
Eam1105I GACNNNNNGTC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 211
FaeI CATG 3 cut(s) 203, 244, 468
FatI CATG 3 cut(s) 199, 240, 464
FbaI TGATCA 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 289
Fsp4HI GCNGC 1 cut(s) 289
FspBI CTAG 2 cut(s) 353, 410
GluI GCNGC 1 cut(s) 289
HaeIII GGCC 1 cut(s) 252
HapII CCGG 1 cut(s) 170
Hin1II CATG 3 cut(s) 203, 244, 468
HinfI GANTC 1 cut(s) 374
HpaII CCGG 1 cut(s) 170
HphI GGTGA 3 cut(s) 184, 404, 406
Hpy188I TCNGA 1 cut(s) 230
Hpy188III TCNNGA 1 cut(s) 305
Hpy99I CGWCG 1 cut(s) 259
HpyCH4III ACNGT 2 cut(s) 335, 426
HpyCH4V TGCA 6 cut(s) 59, 131, 291, 430, 464, 471
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 377
HpyF3I CTNAG 2 cut(s) 161, 438
Hsp92II CATG 3 cut(s) 203, 244, 468
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 2 cut(s) 237, 406
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 5 cut(s) 45, 183, 195, 318, 459
Lsp1109I GCAGC 1 cut(s) 275
MaeI CTAG 2 cut(s) 353, 410
MaeIII GTNAC 1 cut(s) 412
MalI GATC 2 cut(s) 239, 408
MboI GATC 2 cut(s) 237, 406
MboII GAAGA 3 cut(s) 6, 135, 257
MluCI AATT 4 cut(s) 54, 82, 102, 274
MnlI CCTC 5 cut(s) 60, 109, 168, 181, 310
MseI TTAA 1 cut(s) 71
MspI CCGG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 166, 377
NdeII GATC 2 cut(s) 237, 406
NlaIII CATG 3 cut(s) 203, 244, 468
NmuCI GTSAC 1 cut(s) 412
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 1 cut(s) 290
PspPI GGNCC 1 cut(s) 251
PstI CTGCAG 1 cut(s) 293
RsaI GTAC 2 cut(s) 179, 346
RsaNI GTAC 2 cut(s) 178, 345
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 1 cut(s) 289
Sau3AI GATC 2 cut(s) 237, 406
Sau96I GGNCC 1 cut(s) 251
SetI ASST 3 cut(s) 162, 179, 366
SfcI CTRYAG 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 4 cut(s) 54, 82, 102, 274
SsiI CCGC 2 cut(s) 299, 371
SspMI CTAG 2 cut(s) 353, 410
TaaI ACNGT 2 cut(s) 335, 426
TaqI TCGA 2 cut(s) 41, 146
TasI AATT 4 cut(s) 54, 82, 102, 274
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 1 cut(s) 288
Tsp45I GTSAC 1 cut(s) 412
TspRI CASTG 1 cut(s) 442
XspI CTAG 2 cut(s) 353, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.