Rh2CG598700

Mannose-1-phosphate guanyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0020450
Physical Location & Seq
Reverse (-)
77411681 .. 77416138
4458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG598700.1

Sequence Viewer

Length: 798 bp
ATGGAAAGCTCAGGAGAGAAGGTCGTCGCCGTAATCATGGTCGGAGGCCCAACTAAAGGGACTAGATTTCGGCCTCTGTCATTCAACACGCCAAAGCCGCTGTTCCCATTGGCTGGGCAAGCCATGGTTCATCATCCAATCTCAGCTTGTAAGAAGATACCCAATTTGGCTCAAATTTTTCTAGTTGGGTTTTATGAGGAGCGTGAGTTTGCACTCTATGTTTCTTCGATTTCCAATGAGCTTAGAGTGCCGGTGAGGTACTTGAAAGAGGATAAACCACATGGCTCAGCTGGTGGTATTTATTACTTCAGAGATTTGATCATGGAAGACAGCCCGTCGCATATCTTTTTGCTGAATTGTGATGTATGCTGCAGTTTTCCGCTTCCAGATATGCTTGAGGCTCATATAAAATACGGTGGAATGGGTACAATGCTAGTAATCAAGGTTTCTGCGGAATCTGCCAACGAGTTTGGTGAGTTGGTTGCTGATCCAGTCACCAAAGAACTGTTGCATTACACTGAGAAACCAGAGACTTTTGTGAGTGATTTGATCAACTGCGGTGTTTATGTATTTACCCCTGATGTTTTCAATGCCATTGAAGACGTATCCAGTCACCGGGAAGGCAGAGCTAATTTACGCCGTGTTTCCAGCTTTGAAGCGCTCCAGTCTGCTACAAGGAATCTTCCTACAGATTTTGTCAGATTGGATCAAGATATTTTGTCACCTCTTGCTGGAAAGAAGCAATTATATACTTATGAGACCATGGATTTCTGGGAACAGATTAAGACTCCAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110
Pfam Domains
Protein Families
Hexapep NTP_transferase

Protein Analysis

265

Amino Acids

29.66

Weight (kDa)

5.54

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 10 - 210 1.1e-31 Nucleotidyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020450)

Species Orthologous Gene IDs
pyrus_communis pycom14g15540
rosa_chinensis RchiOBHm_Chr5g0039351
rosa_laevigata RLG00000018459
rosa_multiflora Rmu_sc0000193.1_g000030
rosa_samantha Rh2CG598700 Rh7DG259100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 113
AciI CCGC 4 cut(s) 98, 380, 452, 558
AclWI GGATC 2 cut(s) 482, 714
AcsI RAATTY 1 cut(s) 174
AcuI CTGAAG 1 cut(s) 292
AfaI GTAC 2 cut(s) 260, 427
AfeI AGCGCT 1 cut(s) 660
AfiI CCNNNNNNNGG 4 cut(s) 56, 113, 615, 731
AgsI TTSAA 5 cut(s) 85, 265, 589, 599, 656
AhdI GACNNNNNGTC 1 cut(s) 334
AjnI CCWGG 1 cut(s) 790
AluBI AGCT 6 cut(s) 9, 146, 241, 290, 629, 651
AluI AGCT 6 cut(s) 9, 146, 241, 290, 629, 651
Alw26I GTCTC 2 cut(s) 524, 752
AlwI GGATC 2 cut(s) 482, 714
Aor51HI AGCGCT 1 cut(s) 660
AoxI GGCC 2 cut(s) 46, 71
ApeKI GCWGC 1 cut(s) 369
ApoI RAATTY 1 cut(s) 174
AspLEI GCGC 1 cut(s) 661
AspS9I GGNCC 1 cut(s) 47
AsuC2I CCSGG 1 cut(s) 617
AsuHPI GGTGA 5 cut(s) 265, 485, 487, 605, 714
BbsI GAAGAC 2 cut(s) 333, 606
BbvI GCAGC 1 cut(s) 356
BceAI ACGGC 2 cut(s) 14, 624
BciT130I CCWGG 1 cut(s) 792
BciVI GTATCC 1 cut(s) 616
BclI TGATCA 2 cut(s) 318, 549
BcnI CCSGG 1 cut(s) 617
BcoDI GTCTC 2 cut(s) 524, 752
BfaI CTAG 3 cut(s) 63, 182, 434
BfmI CTRYAG 2 cut(s) 370, 687
BfoI RGCGCY 1 cut(s) 662
BfuI GTATCC 1 cut(s) 616
BisI GCNGC 2 cut(s) 98, 370
BlpI GCTNAGC 1 cut(s) 286
BlsI GCNGC 2 cut(s) 99, 371
Bme1390I CCNGG 2 cut(s) 617, 792
BmeRI GACNNNNNGTC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 47
BmrFI CCNGG 2 cut(s) 617, 792
BpiI GAAGAC 2 cut(s) 333, 606
BpmI CTGGAG 2 cut(s) 647, 774
Bpu10I CCTNAGC 1 cut(s) 10
Bpu1102I GCTNAGC 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 1 cut(s) 617
BsaI GGTCTC 1 cut(s) 752
BsaJI CCNNGG 3 cut(s) 123, 762, 791
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 191, 221
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 113, 615, 731
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 3 cut(s) 491, 609, 664
BseBI CCWGG 1 cut(s) 792
BseDI CCNNGG 3 cut(s) 123, 762, 791
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 4 cut(s) 56, 113, 615, 731
BseMII CTCAG 4 cut(s) 24, 156, 300, 510
BseNI ACTGG 3 cut(s) 491, 609, 664
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 356
BseYI CCCAGC 1 cut(s) 113
BshFI GGCC 2 cut(s) 48, 73
BsiSI CCGG 2 cut(s) 251, 616
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 4 cut(s) 56, 113, 615, 731
BsmAI GTCTC 2 cut(s) 524, 752
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 2 cut(s) 48, 73
Bso31I GGTCTC 1 cut(s) 752
Bsp143I GATC 4 cut(s) 318, 487, 549, 706
Bsp1720I GCTNAGC 1 cut(s) 286
Bsp19I CCATGG 2 cut(s) 123, 762
BspACI CCGC 4 cut(s) 98, 380, 452, 558
BspANI GGCC 2 cut(s) 48, 73
BspCNI CTCAG 4 cut(s) 23, 155, 299, 511
BspMAI CTGCAG 1 cut(s) 374
BspPI GGATC 2 cut(s) 482, 714
BspTNI GGTCTC 1 cut(s) 752
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 3 cut(s) 491, 609, 664
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 3 cut(s) 123, 762, 791
BssMI GATC 4 cut(s) 318, 487, 549, 706
BssT1I CCWWGG 2 cut(s) 123, 762
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 2 cut(s) 416, 507
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 5 cut(s) 10, 142, 242, 286, 519
BstDSI CCRYGG 2 cut(s) 123, 762
BstF5I GGATG 1 cut(s) 133
BstH2I RGCGCY 1 cut(s) 662
BstHHI GCGC 1 cut(s) 661
BstKTI GATC 4 cut(s) 321, 490, 552, 709
BstMAI GTCTC 2 cut(s) 524, 752
BstMBI GATC 4 cut(s) 318, 487, 549, 706
BstMWI GCNNNNNNNGC 4 cut(s) 97, 119, 247, 458
BstNI CCWGG 1 cut(s) 792
BstSCI CCNGG 2 cut(s) 615, 790
BstSFI CTRYAG 2 cut(s) 370, 687
BstV1I GCAGC 1 cut(s) 356
BstV2I GAAGAC 2 cut(s) 333, 606
BsuI GTATCC 1 cut(s) 616
BsuRI GGCC 2 cut(s) 48, 73
BtgI CCRYGG 2 cut(s) 123, 762
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 516
Cac8I GCNNGC 1 cut(s) 120
CfoI GCGC 1 cut(s) 661
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 2 cut(s) 259, 426
CviAII CATG 5 cut(s) 37, 124, 281, 322, 763
CviQI GTAC 2 cut(s) 259, 426
DdeI CTNAG 5 cut(s) 10, 142, 242, 286, 519
DpnI GATC 4 cut(s) 320, 489, 551, 708
DpnII GATC 4 cut(s) 318, 487, 549, 706
DriI GACNNNNNGTC 1 cut(s) 334
Eam1105I GACNNNNNGTC 1 cut(s) 334
Eco130I CCWWGG 2 cut(s) 123, 762
Eco31I GGTCTC 1 cut(s) 752
Eco47III AGCGCT 1 cut(s) 660
Eco57I CTGAAG 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 790
EcoT14I CCWWGG 2 cut(s) 123, 762
ErhI CCWWGG 2 cut(s) 123, 762
FaeI CATG 5 cut(s) 40, 127, 284, 325, 766
FaqI GGGAC 1 cut(s) 73
FatI CATG 5 cut(s) 36, 123, 280, 321, 762
FbaI TGATCA 2 cut(s) 318, 549
Fnu4HI GCNGC 2 cut(s) 98, 370
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 2 cut(s) 98, 370
FspBI CTAG 3 cut(s) 63, 182, 434
GlaI GCGC 1 cut(s) 660
GluI GCNGC 2 cut(s) 98, 370
GsaI CCCAGC 1 cut(s) 117
GsuI CTGGAG 2 cut(s) 647, 774
HaeII RGCGCY 1 cut(s) 662
HaeIII GGCC 2 cut(s) 48, 73
HapII CCGG 2 cut(s) 251, 616
HhaI GCGC 1 cut(s) 661
Hin1II CATG 5 cut(s) 40, 127, 284, 325, 766
Hin6I GCGC 1 cut(s) 659
HinP1I GCGC 1 cut(s) 659
HinfI GANTC 3 cut(s) 455, 679, 787
HpaII CCGG 2 cut(s) 251, 616
HphI GGTGA 5 cut(s) 265, 485, 487, 605, 714
Hpy188I TCNGA 3 cut(s) 44, 311, 701
Hpy188III TCNNGA 3 cut(s) 12, 386, 710
Hpy99I CGWCG 2 cut(s) 29, 340
HpyAV CCTTC 2 cut(s) 13, 614
HpyCH4III ACNGT 2 cut(s) 416, 507
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 3 cut(s) 212, 372, 511
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 119, 247, 458
HpyF3I CTNAG 5 cut(s) 10, 142, 242, 286, 519
HpySE526I ACGT 1 cut(s) 603
Hsp92II CATG 5 cut(s) 40, 127, 284, 325, 766
HspAI GCGC 1 cut(s) 659
Ksp22I TGATCA 2 cut(s) 318, 549
Kzo9I GATC 4 cut(s) 318, 487, 549, 706
LmnI GCTCC 2 cut(s) 199, 666
Lsp1109I GCAGC 1 cut(s) 356
MaeI CTAG 3 cut(s) 63, 182, 434
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 3 cut(s) 493, 611, 720
MalI GATC 4 cut(s) 320, 489, 551, 708
MboI GATC 4 cut(s) 318, 487, 549, 706
MboII GAAGA 5 cut(s) 166, 216, 338, 611, 674
MluCI AATT 5 cut(s) 163, 174, 355, 631, 743
MlyI GAGTC 1 cut(s) 781
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 7 cut(s) 38, 84, 190, 249, 262, 391, 735
MseI TTAA 1 cut(s) 783
MspA1I CMGCKG 2 cut(s) 100, 290
MspI CCGG 2 cut(s) 251, 616
MspR9I CCNGG 2 cut(s) 617, 792
MvaI CCWGG 1 cut(s) 792
MwoI GCNNNNNNNGC 4 cut(s) 97, 119, 247, 458
NciI CCSGG 1 cut(s) 617
NcoI CCATGG 2 cut(s) 123, 762
NdeII GATC 4 cut(s) 318, 487, 549, 706
NlaIII CATG 5 cut(s) 40, 127, 284, 325, 766
NmuCI GTSAC 3 cut(s) 493, 611, 720
PfeI GAWTC 2 cut(s) 455, 679
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 2 cut(s) 99, 371
PleI GAGTC 1 cut(s) 781
PpsI GAGTC 1 cut(s) 781
Psp6I CCWGG 1 cut(s) 790
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 790
PspPI GGNCC 1 cut(s) 47
PstI CTGCAG 1 cut(s) 374
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 2 cut(s) 260, 427
RsaNI GTAC 2 cut(s) 259, 426
SaqAI TTAA 1 cut(s) 783
SatI GCNGC 2 cut(s) 98, 370
Sau3AI GATC 4 cut(s) 318, 487, 549, 706
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 1 cut(s) 781
ScrFI CCNGG 2 cut(s) 617, 792
SfcI CTRYAG 2 cut(s) 370, 687
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 5 cut(s) 163, 174, 355, 631, 743
SsiI CCGC 4 cut(s) 98, 380, 452, 558
SspMI CTAG 3 cut(s) 63, 182, 434
StyD4I CCNGG 2 cut(s) 615, 790
StyI CCWWGG 2 cut(s) 123, 762
TaaI ACNGT 2 cut(s) 416, 507
TaiI ACGT 1 cut(s) 606
TaqI TCGA 1 cut(s) 227
TasI AATT 5 cut(s) 163, 174, 355, 631, 743
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 2 cut(s) 455, 679
Tru1I TTAA 1 cut(s) 783
Tru9I TTAA 1 cut(s) 783
TscAI CASTG 1 cut(s) 523
TseFI GTSAC 3 cut(s) 493, 611, 720
TseI GCWGC 1 cut(s) 369
Tsp45I GTSAC 3 cut(s) 493, 611, 720
TspDTI ATGAA 1 cut(s) 119
TspRI CASTG 1 cut(s) 523
Van91I CCANNNNNTGG 1 cut(s) 113
XapI RAATTY 1 cut(s) 174
XspI CTAG 3 cut(s) 63, 182, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.