Rmu_sc0000193.1_g000030

Mannose-1-phosphate guanyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000193.1
OG0020450
Physical Location & Seq
Forward (+)
126333 .. 128649
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000193.1_g000030.1.cds

Sequence Viewer

Length: 588 bp
atggtggcgatattggcgccgaacgggagggacttgagtgatcggacagggaaagcgatgggaggaggtggttggtggagctgggttcgccggaatttggtgtgcagcgaaccggtgccttctcttgaatgcgtttcttttcttcggcttgggagcgtgagtttgcactctgtttcttcgatttccaatgagcttagagtgccggtgaggtacttgaaagaggataaaccacatgcctcagctggtggtatttattacttcagagatttgatcatggaagaaggcccgtcgcatatctttttgctgaattgtgatgtatgctgcagttttccacttccagatatgcttgaggctcatataaaatacggtggaatgggtacaatgctagtaatcaaggtttctgcggaatctgccaacgagtttggtgagttggttgctgatccagtcaccaaagaactgttgcattacactgagaaaccagagacttttttcattggaaggtataattgggatggtctaccaaatggacatgaattggacattggaaggtggttttctatagtccttattcttatttgcttctcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110
Pfam Domains
Protein Families
Hexapep NTP_transferase

Protein Analysis

195

Amino Acids

21.72

Weight (kDa)

5.49

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020450)

Species Orthologous Gene IDs
pyrus_communis pycom14g15540
rosa_chinensis RchiOBHm_Chr5g0039351
rosa_laevigata RLG00000018459
rosa_multiflora Rmu_sc0000193.1_g000030
rosa_samantha Rh2CG598700 Rh7DG259100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 16, 115
AccI GTMKAC 1 cut(s) 517
AciI CCGC 1 cut(s) 404
AclWI GGATC 1 cut(s) 434
AcsI RAATTY 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 244
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 2 cut(s) 212, 379
AfiI CCNNNNNNNGG 1 cut(s) 97
AgeI ACCGGT 1 cut(s) 112
AgsI TTSAA 2 cut(s) 128, 217
AjuI GAANNNNNNNTTGG 4 cut(s) 490, 522, 525, 557
AluBI AGCT 3 cut(s) 81, 193, 242
AluI AGCT 3 cut(s) 81, 193, 242
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 1 cut(s) 434
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 2 cut(s) 105, 321
ApoI RAATTY 1 cut(s) 94
AsiGI ACCGGT 1 cut(s) 112
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 3 cut(s) 217, 437, 439
BanI GGYRCC 2 cut(s) 16, 115
BauI CACGAG 1 cut(s) 583
BbvCI CCTCAGC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 117, 308
BccI CCATC 2 cut(s) 52, 506
BclI TGATCA 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 1 cut(s) 386
BfmI CTRYAG 2 cut(s) 322, 558
BfoI RGCGCY 1 cut(s) 20
BisI GCNGC 2 cut(s) 106, 322
BlsI GCNGC 2 cut(s) 107, 323
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 18, 117
Bpu10I CCTNAGC 1 cut(s) 238
BpuEI CTTGAG 2 cut(s) 55, 368
BsaHI GRCGYC 1 cut(s) 17
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse118I RCCGGY 2 cut(s) 112, 202
Bse1I ACTGG 1 cut(s) 443
BseGI GGATG 1 cut(s) 517
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 2 cut(s) 252, 462
BseNI ACTGG 1 cut(s) 443
BseRI GAGGAG 1 cut(s) 78
BseXI GCAGC 2 cut(s) 117, 308
BseYI CCCAGC 1 cut(s) 81
BsgI GTGCAG 1 cut(s) 124
BshFI GGCC 1 cut(s) 285
BshNI GGYRCC 2 cut(s) 16, 115
BshTI ACCGGT 1 cut(s) 112
BsiSI CCGG 3 cut(s) 91, 113, 203
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 476
BsmFI GGGAC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 1 cut(s) 285
Bsp143I GATC 3 cut(s) 40, 270, 439
BspACI CCGC 1 cut(s) 404
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 2 cut(s) 251, 463
BspLI GGNNCC 2 cut(s) 18, 117
BspMAI CTGCAG 1 cut(s) 326
BspPI GGATC 1 cut(s) 434
BspT107I GGYRCC 2 cut(s) 16, 115
BsrFI RCCGGY 2 cut(s) 112, 202
BsrI ACTGG 1 cut(s) 443
BssAI RCCGGY 2 cut(s) 112, 202
BssMI GATC 3 cut(s) 40, 270, 439
BssNI GRCGYC 1 cut(s) 17
BssSI CACGAG 1 cut(s) 583
Bst2BI CACGAG 1 cut(s) 583
Bst4CI ACNGT 2 cut(s) 368, 459
BstACI GRCGYC 1 cut(s) 17
BstDEI CTNAG 3 cut(s) 194, 238, 471
BstF5I GGATG 1 cut(s) 517
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 3 cut(s) 43, 273, 442
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 3 cut(s) 40, 270, 439
BstMWI GCNNNNNNNGC 4 cut(s) 14, 87, 199, 410
BstNSI RCATGY 1 cut(s) 236
BstSFI CTRYAG 2 cut(s) 322, 558
BstV1I GCAGC 2 cut(s) 117, 308
BsuRI GGCC 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 71
BtsCI GGATG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 468
CfoI GCGC 1 cut(s) 19
Cfr10I RCCGGY 2 cut(s) 112, 202
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 2 cut(s) 211, 378
CspAI ACCGGT 1 cut(s) 112
CviAII CATG 3 cut(s) 233, 274, 530
CviJI RGCY 6 cut(s) 81, 148, 193, 242, 285, 353
CviKI_1 RGCY 6 cut(s) 81, 148, 193, 242, 285, 353
CviQI GTAC 2 cut(s) 211, 378
DdeI CTNAG 3 cut(s) 194, 238, 471
DinI GGCGCC 1 cut(s) 18
DpnI GATC 3 cut(s) 42, 272, 441
DpnII GATC 3 cut(s) 40, 270, 439
Eco57I CTGAAG 1 cut(s) 244
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
FaeI CATG 3 cut(s) 236, 277, 533
FaqI GGGAC 1 cut(s) 44
FatI CATG 3 cut(s) 232, 273, 529
FbaI TGATCA 1 cut(s) 270
FblI GTMKAC 1 cut(s) 517
Fnu4HI GCNGC 2 cut(s) 106, 322
FokI GGATG 1 cut(s) 524
Fsp4HI GCNGC 2 cut(s) 106, 322
FspBI CTAG 1 cut(s) 386
GlaI GCGC 1 cut(s) 18
GluI GCNGC 2 cut(s) 106, 322
GsaI CCCAGC 1 cut(s) 85
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 1 cut(s) 285
HapII CCGG 3 cut(s) 91, 113, 203
HhaI GCGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 3 cut(s) 236, 277, 533
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 1 cut(s) 407
HpaII CCGG 3 cut(s) 91, 113, 203
HphI GGTGA 3 cut(s) 217, 437, 439
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 2 cut(s) 45, 263
Hpy188III TCNNGA 3 cut(s) 125, 338, 585
Hpy8I GTNNAC 1 cut(s) 518
Hpy99I CGWCG 1 cut(s) 292
HpyAV CCTTC 4 cut(s) 129, 275, 492, 540
HpyCH4III ACNGT 2 cut(s) 368, 459
HpyCH4V TGCA 4 cut(s) 105, 166, 324, 463
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 87, 199, 410
HpyF3I CTNAG 3 cut(s) 194, 238, 471
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 3 cut(s) 236, 277, 533
HspAI GCGC 1 cut(s) 17
KasI GGCGCC 1 cut(s) 16
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 3 cut(s) 40, 270, 439
LmnI GCTCC 2 cut(s) 78, 153
LpnPI CCDG 9 cut(s) 33, 67, 104, 126, 216, 228, 351, 456, 492
Lsp1109I GCAGC 2 cut(s) 117, 308
MaeI CTAG 1 cut(s) 386
MaeIII GTNAC 1 cut(s) 445
MalI GATC 3 cut(s) 42, 272, 441
MboI GATC 3 cut(s) 40, 270, 439
MboII GAAGA 3 cut(s) 134, 168, 290
MluCI AATT 4 cut(s) 94, 307, 505, 533
Mly113I GGCGCC 1 cut(s) 17
MnlI CCTC 7 cut(s) 21, 56, 59, 201, 214, 247, 343
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 3 cut(s) 91, 113, 203
Mva1269I GAATGC 1 cut(s) 134
MwoI GCNNNNNNNGC 4 cut(s) 14, 87, 199, 410
NarI GGCGCC 1 cut(s) 17
NdeII GATC 3 cut(s) 40, 270, 439
NlaIII CATG 3 cut(s) 236, 277, 533
NlaIV GGNNCC 2 cut(s) 18, 117
NmuCI GTSAC 1 cut(s) 445
NspI RCATGY 1 cut(s) 236
PctI GAATGC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 407
PinAI ACCGGT 1 cut(s) 112
PkrI GCNGC 2 cut(s) 107, 323
PluTI GGCGCC 1 cut(s) 20
PspFI CCCAGC 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 18, 117
PspPI GGNCC 1 cut(s) 284
PstI CTGCAG 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 2 cut(s) 212, 379
RsaNI GTAC 2 cut(s) 211, 378
SatI GCNGC 2 cut(s) 106, 322
Sau3AI GATC 3 cut(s) 40, 270, 439
Sau96I GGNCC 1 cut(s) 284
SetI ASST 8 cut(s) 70, 83, 195, 212, 244, 399, 503, 551
SfcI CTRYAG 2 cut(s) 322, 558
SfoI GGCGCC 1 cut(s) 18
SmlI CTYRAG 2 cut(s) 34, 347
SmoI CTYRAG 2 cut(s) 34, 347
Sse9I AATT 4 cut(s) 94, 307, 505, 533
SsiI CCGC 1 cut(s) 404
SspDI GGCGCC 1 cut(s) 16
SspMI CTAG 1 cut(s) 386
TaaI ACNGT 2 cut(s) 368, 459
TaqI TCGA 1 cut(s) 179
TasI AATT 4 cut(s) 94, 307, 505, 533
TfiI GAWTC 1 cut(s) 407
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 2 cut(s) 105, 321
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 2 cut(s) 481, 546
TspRI CASTG 1 cut(s) 475
XapI RAATTY 1 cut(s) 94
XceI RCATGY 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 517
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.